co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G37360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034337: RNA folding	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0016553: base conversion or substitution editing	0.00E+00
4	GO:0015979: photosynthesis	1.03E-25
5	GO:0009773: photosynthetic electron transport in photosystem I	1.33E-12
6	GO:0010196: nonphotochemical quenching	7.30E-12
7	GO:0009409: response to cold	2.12E-09
8	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.51E-07
9	GO:0006000: fructose metabolic process	2.83E-06
10	GO:0090391: granum assembly	2.83E-06
11	GO:0015995: chlorophyll biosynthetic process	6.15E-06
12	GO:0009735: response to cytokinin	6.72E-06
13	GO:0018298: protein-chromophore linkage	7.69E-06
14	GO:0019253: reductive pentose-phosphate cycle	8.47E-06
15	GO:0015976: carbon utilization	1.25E-05
16	GO:0019464: glycine decarboxylation via glycine cleavage system	1.25E-05
17	GO:0009765: photosynthesis, light harvesting	1.25E-05
18	GO:2000122: negative regulation of stomatal complex development	1.25E-05
19	GO:0006546: glycine catabolic process	1.25E-05
20	GO:0010037: response to carbon dioxide	1.25E-05
21	GO:0009768: photosynthesis, light harvesting in photosystem I	1.77E-05
22	GO:0009772: photosynthetic electron transport in photosystem II	5.92E-05
23	GO:0042742: defense response to bacterium	7.30E-05
24	GO:0006002: fructose 6-phosphate metabolic process	9.69E-05
25	GO:0010027: thylakoid membrane organization	1.13E-04
26	GO:0010206: photosystem II repair	1.20E-04
27	GO:0071588: hydrogen peroxide mediated signaling pathway	1.22E-04
28	GO:0043489: RNA stabilization	1.22E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	1.22E-04
30	GO:0000481: maturation of 5S rRNA	1.22E-04
31	GO:1904964: positive regulation of phytol biosynthetic process	1.22E-04
32	GO:0019684: photosynthesis, light reaction	2.00E-04
33	GO:0018119: peptidyl-cysteine S-nitrosylation	2.00E-04
34	GO:0006094: gluconeogenesis	2.65E-04
35	GO:0005986: sucrose biosynthetic process	2.65E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.82E-04
37	GO:1900871: chloroplast mRNA modification	2.82E-04
38	GO:0010207: photosystem II assembly	3.00E-04
39	GO:0006636: unsaturated fatty acid biosynthetic process	3.77E-04
40	GO:0009658: chloroplast organization	4.04E-04
41	GO:0051513: regulation of monopolar cell growth	6.66E-04
42	GO:0071484: cellular response to light intensity	6.66E-04
43	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	6.66E-04
44	GO:0009052: pentose-phosphate shunt, non-oxidative branch	6.66E-04
45	GO:0015986: ATP synthesis coupled proton transport	8.75E-04
46	GO:0045727: positive regulation of translation	8.84E-04
47	GO:0015994: chlorophyll metabolic process	8.84E-04
48	GO:0000302: response to reactive oxygen species	9.99E-04
49	GO:0055114: oxidation-reduction process	1.05E-03
50	GO:0031365: N-terminal protein amino acid modification	1.12E-03
51	GO:0006461: protein complex assembly	1.12E-03
52	GO:0042549: photosystem II stabilization	1.37E-03
53	GO:0010019: chloroplast-nucleus signaling pathway	1.64E-03
54	GO:1901259: chloroplast rRNA processing	1.64E-03
55	GO:0009817: defense response to fungus, incompatible interaction	1.84E-03
56	GO:0009769: photosynthesis, light harvesting in photosystem II	1.92E-03
57	GO:0009645: response to low light intensity stimulus	1.92E-03
58	GO:0010218: response to far red light	2.03E-03
59	GO:0009631: cold acclimation	2.13E-03
60	GO:0010119: regulation of stomatal movement	2.13E-03
61	GO:0009819: drought recovery	2.22E-03
62	GO:0032508: DNA duplex unwinding	2.22E-03
63	GO:0009637: response to blue light	2.33E-03
64	GO:0034599: cellular response to oxidative stress	2.43E-03
65	GO:0017004: cytochrome complex assembly	2.54E-03
66	GO:0009657: plastid organization	2.54E-03
67	GO:0032544: plastid translation	2.54E-03
68	GO:0006754: ATP biosynthetic process	2.87E-03
69	GO:0010114: response to red light	2.99E-03
70	GO:0010205: photoinhibition	3.21E-03
71	GO:0006810: transport	3.34E-03
72	GO:0009089: lysine biosynthetic process via diaminopimelate	3.94E-03
73	GO:0000272: polysaccharide catabolic process	3.94E-03
74	GO:0045454: cell redox homeostasis	4.17E-03
75	GO:0009767: photosynthetic electron transport chain	4.71E-03
76	GO:0006006: glucose metabolic process	4.71E-03
77	GO:0010020: chloroplast fission	5.12E-03
78	GO:0005985: sucrose metabolic process	5.54E-03
79	GO:0048511: rhythmic process	7.34E-03
80	GO:0009269: response to desiccation	7.34E-03
81	GO:0042744: hydrogen peroxide catabolic process	8.13E-03
82	GO:0006012: galactose metabolic process	8.30E-03
83	GO:0006633: fatty acid biosynthetic process	8.97E-03
84	GO:0042631: cellular response to water deprivation	9.83E-03
85	GO:0007623: circadian rhythm	9.86E-03
86	GO:0042752: regulation of circadian rhythm	1.09E-02
87	GO:0019252: starch biosynthetic process	1.15E-02
88	GO:0042128: nitrate assimilation	1.69E-02
89	GO:0080167: response to karrikin	1.90E-02
90	GO:0007568: aging	2.09E-02
91	GO:0009737: response to abscisic acid	2.19E-02
92	GO:0009853: photorespiration	2.23E-02
93	GO:0045087: innate immune response	2.23E-02
94	GO:0016051: carbohydrate biosynthetic process	2.23E-02
95	GO:0030001: metal ion transport	2.44E-02
96	GO:0032259: methylation	2.69E-02
97	GO:0009644: response to high light intensity	2.82E-02
98	GO:0006364: rRNA processing	3.30E-02
99	GO:0006096: glycolytic process	3.72E-02
100	GO:0006396: RNA processing	4.33E-02
101	GO:0009416: response to light stimulus	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0051738: xanthophyll binding	0.00E+00
4	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
5	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
6	GO:0016168: chlorophyll binding	1.11E-07
7	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.51E-07
8	GO:0004375: glycine dehydrogenase (decarboxylating) activity	6.65E-06
9	GO:0031409: pigment binding	1.25E-05
10	GO:0004130: cytochrome-c peroxidase activity	3.11E-05
11	GO:0051920: peroxiredoxin activity	4.39E-05
12	GO:0005509: calcium ion binding	5.84E-05
13	GO:0016209: antioxidant activity	7.70E-05
14	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.22E-04
15	GO:0045485: omega-6 fatty acid desaturase activity	1.22E-04
16	GO:0004089: carbonate dehydratase activity	2.65E-04
17	GO:0047746: chlorophyllase activity	2.82E-04
18	GO:0042389: omega-3 fatty acid desaturase activity	2.82E-04
19	GO:0010297: heteropolysaccharide binding	2.82E-04
20	GO:0004047: aminomethyltransferase activity	2.82E-04
21	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.82E-04
22	GO:0008967: phosphoglycolate phosphatase activity	2.82E-04
23	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.82E-04
24	GO:0008266: poly(U) RNA binding	3.00E-04
25	GO:0051537: 2 iron, 2 sulfur cluster binding	3.58E-04
26	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.65E-04
27	GO:0004324: ferredoxin-NADP+ reductase activity	4.65E-04
28	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.65E-04
29	GO:0004751: ribose-5-phosphate isomerase activity	4.65E-04
30	GO:0022891: substrate-specific transmembrane transporter activity	6.02E-04
31	GO:0016851: magnesium chelatase activity	6.66E-04
32	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	8.17E-04
33	GO:0004659: prenyltransferase activity	8.84E-04
34	GO:1990137: plant seed peroxidase activity	8.84E-04
35	GO:0043495: protein anchor	8.84E-04
36	GO:0019843: rRNA binding	9.79E-04
37	GO:0003959: NADPH dehydrogenase activity	1.12E-03
38	GO:0042578: phosphoric ester hydrolase activity	1.37E-03
39	GO:0016688: L-ascorbate peroxidase activity	1.37E-03
40	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.64E-03
41	GO:0004602: glutathione peroxidase activity	1.64E-03
42	GO:0008235: metalloexopeptidase activity	1.92E-03
43	GO:0019899: enzyme binding	1.92E-03
44	GO:0004034: aldose 1-epimerase activity	2.22E-03
45	GO:0004601: peroxidase activity	2.53E-03
46	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.54E-03
47	GO:0005198: structural molecule activity	3.36E-03
48	GO:0030234: enzyme regulator activity	3.57E-03
49	GO:0004177: aminopeptidase activity	3.94E-03
50	GO:0031072: heat shock protein binding	4.71E-03
51	GO:0005528: FK506 binding	6.42E-03
52	GO:0004176: ATP-dependent peptidase activity	7.34E-03
53	GO:0003756: protein disulfide isomerase activity	8.80E-03
54	GO:0016853: isomerase activity	1.09E-02
55	GO:0050662: coenzyme binding	1.09E-02
56	GO:0042802: identical protein binding	1.25E-02
57	GO:0008483: transaminase activity	1.44E-02
58	GO:0008237: metallopeptidase activity	1.44E-02
59	GO:0004222: metalloendopeptidase activity	2.02E-02
60	GO:0046872: metal ion binding	2.17E-02
61	GO:0016787: hydrolase activity	2.21E-02
62	GO:0050661: NADP binding	2.44E-02
63	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.98E-02
64	GO:0051287: NAD binding	3.06E-02
65	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.80E-02
66	GO:0051082: unfolded protein binding	4.24E-02
67	GO:0003729: mRNA binding	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009535: chloroplast thylakoid membrane	1.16E-60
5	GO:0009507: chloroplast	8.91E-60
6	GO:0009534: chloroplast thylakoid	1.56E-51
7	GO:0009579: thylakoid	1.29E-36
8	GO:0009941: chloroplast envelope	7.84E-33
9	GO:0009570: chloroplast stroma	6.90E-24
10	GO:0009543: chloroplast thylakoid lumen	8.05E-19
11	GO:0031977: thylakoid lumen	7.41E-14
12	GO:0030095: chloroplast photosystem II	5.77E-12
13	GO:0009654: photosystem II oxygen evolving complex	2.75E-11
14	GO:0009523: photosystem II	3.61E-10
15	GO:0019898: extrinsic component of membrane	3.61E-10
16	GO:0010319: stromule	1.08E-09
17	GO:0010287: plastoglobule	8.72E-09
18	GO:0009706: chloroplast inner membrane	1.58E-07
19	GO:0042651: thylakoid membrane	2.94E-07
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.76E-06
21	GO:0005960: glycine cleavage complex	6.65E-06
22	GO:0009517: PSII associated light-harvesting complex II	1.25E-05
23	GO:0048046: apoplast	2.28E-05
24	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.11E-05
25	GO:0009522: photosystem I	5.22E-05
26	GO:0009783: photosystem II antenna complex	1.22E-04
27	GO:0009344: nitrite reductase complex [NAD(P)H]	1.22E-04
28	GO:0032040: small-subunit processome	2.32E-04
29	GO:0009508: plastid chromosome	2.65E-04
30	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.82E-04
31	GO:0030093: chloroplast photosystem I	2.82E-04
32	GO:0042170: plastid membrane	2.82E-04
33	GO:0030076: light-harvesting complex	3.37E-04
34	GO:0010007: magnesium chelatase complex	4.65E-04
35	GO:0031969: chloroplast membrane	5.63E-04
36	GO:0009544: chloroplast ATP synthase complex	8.84E-04
37	GO:0009295: nucleoid	1.27E-03
38	GO:0016020: membrane	1.28E-03
39	GO:0009533: chloroplast stromal thylakoid	1.92E-03
40	GO:0009538: photosystem I reaction center	2.22E-03
41	GO:0005811: lipid particle	2.54E-03
42	GO:0042644: chloroplast nucleoid	2.87E-03
43	GO:0009532: plastid stroma	7.34E-03
44	GO:0016021: integral component of membrane	1.50E-02
45	GO:0030529: intracellular ribonucleoprotein complex	1.56E-02
46	GO:0005840: ribosome	2.91E-02