Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G28500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:0033231: carbohydrate export0.00E+00
4GO:2000121: regulation of removal of superoxide radicals0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0042407: cristae formation0.00E+00
7GO:0006223: uracil salvage0.00E+00
8GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
9GO:0016553: base conversion or substitution editing0.00E+00
10GO:0042820: vitamin B6 catabolic process0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
13GO:0006412: translation1.08E-17
14GO:0015995: chlorophyll biosynthetic process1.62E-12
15GO:0032544: plastid translation4.80E-12
16GO:0015979: photosynthesis6.33E-11
17GO:0042254: ribosome biogenesis1.89E-10
18GO:0009658: chloroplast organization3.25E-09
19GO:0009735: response to cytokinin5.39E-08
20GO:0006782: protoporphyrinogen IX biosynthetic process4.30E-07
21GO:1901259: chloroplast rRNA processing2.83E-06
22GO:0090391: granum assembly1.33E-05
23GO:0006783: heme biosynthetic process1.39E-05
24GO:0051085: chaperone mediated protein folding requiring cofactor2.99E-05
25GO:0009772: photosynthetic electron transport in photosystem II2.21E-04
26GO:0042255: ribosome assembly2.80E-04
27GO:1902334: fructose export from vacuole to cytoplasm2.84E-04
28GO:0015755: fructose transport2.84E-04
29GO:0009443: pyridoxal 5'-phosphate salvage2.84E-04
30GO:0043489: RNA stabilization2.84E-04
31GO:1904966: positive regulation of vitamin E biosynthetic process2.84E-04
32GO:1904964: positive regulation of phytol biosynthetic process2.84E-04
33GO:0042371: vitamin K biosynthetic process2.84E-04
34GO:0034337: RNA folding2.84E-04
35GO:0032502: developmental process3.84E-04
36GO:0006779: porphyrin-containing compound biosynthetic process4.91E-04
37GO:0010027: thylakoid membrane organization5.68E-04
38GO:1902326: positive regulation of chlorophyll biosynthetic process6.25E-04
39GO:0006423: cysteinyl-tRNA aminoacylation6.25E-04
40GO:0080183: response to photooxidative stress6.25E-04
41GO:0006729: tetrahydrobiopterin biosynthetic process6.25E-04
42GO:0006568: tryptophan metabolic process6.25E-04
43GO:0009773: photosynthetic electron transport in photosystem I6.61E-04
44GO:0010207: photosystem II assembly9.62E-04
45GO:0006518: peptide metabolic process1.01E-03
46GO:0071492: cellular response to UV-A1.01E-03
47GO:0006760: folic acid-containing compound metabolic process1.01E-03
48GO:0019344: cysteine biosynthetic process1.32E-03
49GO:0042742: defense response to bacterium1.34E-03
50GO:0006241: CTP biosynthetic process1.45E-03
51GO:0009052: pentose-phosphate shunt, non-oxidative branch1.45E-03
52GO:0006165: nucleoside diphosphate phosphorylation1.45E-03
53GO:0006228: UTP biosynthetic process1.45E-03
54GO:0006986: response to unfolded protein1.45E-03
55GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.45E-03
56GO:2001141: regulation of RNA biosynthetic process1.45E-03
57GO:0051260: protein homooligomerization1.60E-03
58GO:0006457: protein folding1.83E-03
59GO:0071486: cellular response to high light intensity1.94E-03
60GO:0006183: GTP biosynthetic process1.94E-03
61GO:0030007: cellular potassium ion homeostasis1.94E-03
62GO:0046656: folic acid biosynthetic process1.94E-03
63GO:0044206: UMP salvage1.94E-03
64GO:0006021: inositol biosynthetic process1.94E-03
65GO:0000413: protein peptidyl-prolyl isomerization2.42E-03
66GO:0034052: positive regulation of plant-type hypersensitive response2.48E-03
67GO:0043097: pyrimidine nucleoside salvage2.48E-03
68GO:0032543: mitochondrial translation2.48E-03
69GO:0010236: plastoquinone biosynthetic process2.48E-03
70GO:0031365: N-terminal protein amino acid modification2.48E-03
71GO:0009409: response to cold2.61E-03
72GO:0006206: pyrimidine nucleobase metabolic process3.06E-03
73GO:0032973: amino acid export3.06E-03
74GO:0010190: cytochrome b6f complex assembly3.06E-03
75GO:0046855: inositol phosphate dephosphorylation3.06E-03
76GO:0009117: nucleotide metabolic process3.06E-03
77GO:0042549: photosystem II stabilization3.06E-03
78GO:0009955: adaxial/abaxial pattern specification3.68E-03
79GO:0042026: protein refolding3.68E-03
80GO:0042372: phylloquinone biosynthetic process3.68E-03
81GO:0017148: negative regulation of translation3.68E-03
82GO:0046654: tetrahydrofolate biosynthetic process3.68E-03
83GO:0009854: oxidative photosynthetic carbon pathway3.68E-03
84GO:0010555: response to mannitol3.68E-03
85GO:0043090: amino acid import4.34E-03
86GO:0010196: nonphotochemical quenching4.34E-03
87GO:0045454: cell redox homeostasis4.59E-03
88GO:0048564: photosystem I assembly5.03E-03
89GO:0009642: response to light intensity5.03E-03
90GO:0006353: DNA-templated transcription, termination5.03E-03
91GO:0043068: positive regulation of programmed cell death5.03E-03
92GO:0009627: systemic acquired resistance5.19E-03
93GO:0009790: embryo development5.42E-03
94GO:0071482: cellular response to light stimulus5.77E-03
95GO:0009657: plastid organization5.77E-03
96GO:0017004: cytochrome complex assembly5.77E-03
97GO:0009245: lipid A biosynthetic process6.54E-03
98GO:0080144: amino acid homeostasis6.54E-03
99GO:0034765: regulation of ion transmembrane transport6.54E-03
100GO:0043067: regulation of programmed cell death7.35E-03
101GO:0031425: chloroplast RNA processing7.35E-03
102GO:0006995: cellular response to nitrogen starvation8.19E-03
103GO:0019538: protein metabolic process8.19E-03
104GO:0006535: cysteine biosynthetic process from serine8.19E-03
105GO:0008380: RNA splicing8.41E-03
106GO:0019684: photosynthesis, light reaction9.06E-03
107GO:0043085: positive regulation of catalytic activity9.06E-03
108GO:0006415: translational termination9.06E-03
109GO:0006352: DNA-templated transcription, initiation9.06E-03
110GO:0009750: response to fructose9.06E-03
111GO:0006790: sulfur compound metabolic process9.96E-03
112GO:0045037: protein import into chloroplast stroma9.96E-03
113GO:0010628: positive regulation of gene expression1.09E-02
114GO:0009767: photosynthetic electron transport chain1.09E-02
115GO:0019853: L-ascorbic acid biosynthetic process1.29E-02
116GO:0046854: phosphatidylinositol phosphorylation1.29E-02
117GO:0006636: unsaturated fatty acid biosynthetic process1.39E-02
118GO:0009116: nucleoside metabolic process1.50E-02
119GO:0000027: ribosomal large subunit assembly1.50E-02
120GO:0045333: cellular respiration1.50E-02
121GO:0006487: protein N-linked glycosylation1.50E-02
122GO:0080167: response to karrikin1.54E-02
123GO:0061077: chaperone-mediated protein folding1.72E-02
124GO:0009814: defense response, incompatible interaction1.83E-02
125GO:0007005: mitochondrion organization1.83E-02
126GO:0009411: response to UV1.95E-02
127GO:0009306: protein secretion2.07E-02
128GO:0016117: carotenoid biosynthetic process2.19E-02
129GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.19E-02
130GO:0070417: cellular response to cold2.19E-02
131GO:0042335: cuticle development2.31E-02
132GO:0006662: glycerol ether metabolic process2.44E-02
133GO:0010197: polar nucleus fusion2.44E-02
134GO:0009741: response to brassinosteroid2.44E-02
135GO:0009646: response to absence of light2.57E-02
136GO:0015986: ATP synthesis coupled proton transport2.57E-02
137GO:0006397: mRNA processing2.65E-02
138GO:0010183: pollen tube guidance2.70E-02
139GO:0006633: fatty acid biosynthetic process3.01E-02
140GO:0006413: translational initiation3.08E-02
141GO:1901657: glycosyl compound metabolic process3.11E-02
142GO:0009567: double fertilization forming a zygote and endosperm3.25E-02
143GO:0010286: heat acclimation3.39E-02
144GO:0071805: potassium ion transmembrane transport3.39E-02
145GO:0010029: regulation of seed germination3.83E-02
146GO:0018298: protein-chromophore linkage4.45E-02
147GO:0008219: cell death4.45E-02
148GO:0010119: regulation of stomatal movement4.93E-02
149GO:0009631: cold acclimation4.93E-02
RankGO TermAdjusted P value
1GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0015269: calcium-activated potassium channel activity0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
9GO:0004418: hydroxymethylbilane synthase activity0.00E+00
10GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
11GO:0046408: chlorophyll synthetase activity0.00E+00
12GO:0015284: fructose uniporter activity0.00E+00
13GO:0019843: rRNA binding3.27E-20
14GO:0003735: structural constituent of ribosome1.41E-19
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.39E-05
16GO:0016851: magnesium chelatase activity2.99E-05
17GO:0004425: indole-3-glycerol-phosphate synthase activity2.84E-04
18GO:0000824: inositol tetrakisphosphate 3-kinase activity2.84E-04
19GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.84E-04
20GO:0047326: inositol tetrakisphosphate 5-kinase activity2.84E-04
21GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity2.84E-04
22GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.84E-04
23GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity2.84E-04
24GO:0010347: L-galactose-1-phosphate phosphatase activity2.84E-04
25GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity2.84E-04
26GO:0051082: unfolded protein binding5.66E-04
27GO:0102083: 7,8-dihydromonapterin aldolase activity6.25E-04
28GO:0052832: inositol monophosphate 3-phosphatase activity6.25E-04
29GO:0004817: cysteine-tRNA ligase activity6.25E-04
30GO:0000774: adenyl-nucleotide exchange factor activity6.25E-04
31GO:0008934: inositol monophosphate 1-phosphatase activity6.25E-04
32GO:0052833: inositol monophosphate 4-phosphatase activity6.25E-04
33GO:0016630: protochlorophyllide reductase activity6.25E-04
34GO:0004150: dihydroneopterin aldolase activity6.25E-04
35GO:0005353: fructose transmembrane transporter activity6.25E-04
36GO:0042389: omega-3 fatty acid desaturase activity6.25E-04
37GO:0004148: dihydrolipoyl dehydrogenase activity1.01E-03
38GO:0004751: ribose-5-phosphate isomerase activity1.01E-03
39GO:0070402: NADPH binding1.01E-03
40GO:0005528: FK506 binding1.32E-03
41GO:0035529: NADH pyrophosphatase activity1.45E-03
42GO:0016149: translation release factor activity, codon specific1.45E-03
43GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.45E-03
44GO:0004550: nucleoside diphosphate kinase activity1.45E-03
45GO:0043023: ribosomal large subunit binding1.45E-03
46GO:0008097: 5S rRNA binding1.45E-03
47GO:0051087: chaperone binding1.45E-03
48GO:0022891: substrate-specific transmembrane transporter activity1.91E-03
49GO:0004045: aminoacyl-tRNA hydrolase activity1.94E-03
50GO:0016987: sigma factor activity1.94E-03
51GO:0043495: protein anchor1.94E-03
52GO:0004659: prenyltransferase activity1.94E-03
53GO:0001053: plastid sigma factor activity1.94E-03
54GO:0004845: uracil phosphoribosyltransferase activity1.94E-03
55GO:0003727: single-stranded RNA binding2.07E-03
56GO:0003959: NADPH dehydrogenase activity2.48E-03
57GO:0030414: peptidase inhibitor activity2.48E-03
58GO:0004040: amidase activity2.48E-03
59GO:0016651: oxidoreductase activity, acting on NAD(P)H2.48E-03
60GO:0031177: phosphopantetheine binding3.06E-03
61GO:0016462: pyrophosphatase activity3.06E-03
62GO:0015271: outward rectifier potassium channel activity3.06E-03
63GO:0003729: mRNA binding3.21E-03
64GO:0015035: protein disulfide oxidoreductase activity3.47E-03
65GO:0051920: peroxiredoxin activity3.68E-03
66GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.68E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.68E-03
68GO:0004849: uridine kinase activity3.68E-03
69GO:0000035: acyl binding3.68E-03
70GO:0004124: cysteine synthase activity3.68E-03
71GO:0008235: metalloexopeptidase activity4.34E-03
72GO:0019899: enzyme binding4.34E-03
73GO:0016168: chlorophyll binding4.91E-03
74GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process5.03E-03
75GO:0004033: aldo-keto reductase (NADP) activity5.03E-03
76GO:0016209: antioxidant activity5.03E-03
77GO:0005267: potassium channel activity5.77E-03
78GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.77E-03
79GO:0003747: translation release factor activity6.54E-03
80GO:0008047: enzyme activator activity8.19E-03
81GO:0004864: protein phosphatase inhibitor activity8.19E-03
82GO:0008794: arsenate reductase (glutaredoxin) activity9.06E-03
83GO:0004177: aminopeptidase activity9.06E-03
84GO:0044183: protein binding involved in protein folding9.06E-03
85GO:0003723: RNA binding9.74E-03
86GO:0051537: 2 iron, 2 sulfur cluster binding1.07E-02
87GO:0031072: heat shock protein binding1.09E-02
88GO:0004601: peroxidase activity1.17E-02
89GO:0008266: poly(U) RNA binding1.19E-02
90GO:0005509: calcium ion binding1.23E-02
91GO:0051119: sugar transmembrane transporter activity1.29E-02
92GO:0003690: double-stranded DNA binding1.39E-02
93GO:0043424: protein histidine kinase binding1.60E-02
94GO:0005216: ion channel activity1.60E-02
95GO:0004176: ATP-dependent peptidase activity1.72E-02
96GO:0047134: protein-disulfide reductase activity2.19E-02
97GO:0016491: oxidoreductase activity2.26E-02
98GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.44E-02
99GO:0004791: thioredoxin-disulfide reductase activity2.57E-02
100GO:0030170: pyridoxal phosphate binding2.66E-02
101GO:0004872: receptor activity2.70E-02
102GO:0048038: quinone binding2.83E-02
103GO:0008565: protein transporter activity2.87E-02
104GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.11E-02
105GO:0008483: transaminase activity3.39E-02
106GO:0016722: oxidoreductase activity, oxidizing metal ions3.39E-02
107GO:0008237: metallopeptidase activity3.39E-02
108GO:0003743: translation initiation factor activity3.86E-02
109GO:0008375: acetylglucosaminyltransferase activity3.98E-02
110GO:0102483: scopolin beta-glucosidase activity4.13E-02
111GO:0005096: GTPase activator activity4.60E-02
112GO:0004222: metalloendopeptidase activity4.76E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast3.61E-84
4GO:0009570: chloroplast stroma9.69E-61
5GO:0009941: chloroplast envelope1.86E-50
6GO:0009535: chloroplast thylakoid membrane4.59E-38
7GO:0009579: thylakoid1.84E-30
8GO:0005840: ribosome1.17E-21
9GO:0009543: chloroplast thylakoid lumen2.33E-15
10GO:0031977: thylakoid lumen4.69E-13
11GO:0009534: chloroplast thylakoid7.30E-13
12GO:0009654: photosystem II oxygen evolving complex1.35E-09
13GO:0019898: extrinsic component of membrane7.10E-07
14GO:0009536: plastid6.92E-06
15GO:0000311: plastid large ribosomal subunit3.93E-05
16GO:0009295: nucleoid3.96E-05
17GO:0015934: large ribosomal subunit1.08E-04
18GO:0015935: small ribosomal subunit1.31E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.84E-04
20GO:0009515: granal stacked thylakoid2.84E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]2.84E-04
22GO:0030529: intracellular ribonucleoprotein complex5.68E-04
23GO:0042170: plastid membrane6.25E-04
24GO:0009508: plastid chromosome8.57E-04
25GO:0030095: chloroplast photosystem II9.62E-04
26GO:0000312: plastid small ribosomal subunit9.62E-04
27GO:0010007: magnesium chelatase complex1.01E-03
28GO:0033281: TAT protein transport complex1.01E-03
29GO:0009509: chromoplast1.01E-03
30GO:0042646: plastid nucleoid1.45E-03
31GO:0009523: photosystem II3.01E-03
32GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.06E-03
33GO:0048046: apoplast3.28E-03
34GO:0031969: chloroplast membrane3.49E-03
35GO:0016363: nuclear matrix3.68E-03
36GO:0010319: stromule4.14E-03
37GO:0009533: chloroplast stromal thylakoid4.34E-03
38GO:0009539: photosystem II reaction center5.77E-03
39GO:0005763: mitochondrial small ribosomal subunit6.54E-03
40GO:0032040: small-subunit processome9.96E-03
41GO:0022626: cytosolic ribosome1.41E-02
42GO:0042651: thylakoid membrane1.60E-02
43GO:0009532: plastid stroma1.72E-02
44GO:0009706: chloroplast inner membrane1.91E-02
45GO:0010287: plastoglobule2.27E-02
46GO:0005623: cell2.46E-02
47GO:0005759: mitochondrial matrix3.01E-02
48GO:0022627: cytosolic small ribosomal subunit4.37E-02
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Gene type



Gene DE type