co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G28290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0071258: cellular response to gravity	8.20E-07
6	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.36E-05
7	GO:0032543: mitochondrial translation	2.24E-05
8	GO:0016998: cell wall macromolecule catabolic process	2.31E-05
9	GO:1901679: nucleotide transmembrane transport	2.94E-04
10	GO:0045717: negative regulation of fatty acid biosynthetic process	2.94E-04
11	GO:0010289: homogalacturonan biosynthetic process	2.94E-04
12	GO:0010198: synergid death	2.94E-04
13	GO:0010020: chloroplast fission	3.20E-04
14	GO:0080121: AMP transport	4.86E-04
15	GO:2001295: malonyl-CoA biosynthetic process	4.86E-04
16	GO:0007017: microtubule-based process	4.91E-04
17	GO:0016556: mRNA modification	6.95E-04
18	GO:0006424: glutamyl-tRNA aminoacylation	6.95E-04
19	GO:0043572: plastid fission	6.95E-04
20	GO:0010371: regulation of gibberellin biosynthetic process	6.95E-04
21	GO:0008295: spermidine biosynthetic process	9.21E-04
22	GO:0015867: ATP transport	9.21E-04
23	GO:0031122: cytoplasmic microtubule organization	9.21E-04
24	GO:0071554: cell wall organization or biogenesis	1.06E-03
25	GO:0045487: gibberellin catabolic process	1.16E-03
26	GO:0000304: response to singlet oxygen	1.16E-03
27	GO:0006633: fatty acid biosynthetic process	1.41E-03
28	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.43E-03
29	GO:0035435: phosphate ion transmembrane transport	1.43E-03
30	GO:0006655: phosphatidylglycerol biosynthetic process	1.43E-03
31	GO:0006796: phosphate-containing compound metabolic process	1.43E-03
32	GO:0010405: arabinogalactan protein metabolic process	1.43E-03
33	GO:0015866: ADP transport	1.43E-03
34	GO:0016126: sterol biosynthetic process	1.51E-03
35	GO:0098655: cation transmembrane transport	1.71E-03
36	GO:0010411: xyloglucan metabolic process	1.78E-03
37	GO:0006955: immune response	2.01E-03
38	GO:0009395: phospholipid catabolic process	2.01E-03
39	GO:0016559: peroxisome fission	2.32E-03
40	GO:0007155: cell adhesion	2.32E-03
41	GO:0008610: lipid biosynthetic process	2.32E-03
42	GO:0009793: embryo development ending in seed dormancy	2.40E-03
43	GO:0009657: plastid organization	2.65E-03
44	GO:0006526: arginine biosynthetic process	2.65E-03
45	GO:0032544: plastid translation	2.65E-03
46	GO:0009658: chloroplast organization	2.75E-03
47	GO:0006839: mitochondrial transport	2.82E-03
48	GO:0006754: ATP biosynthetic process	3.00E-03
49	GO:0098656: anion transmembrane transport	3.00E-03
50	GO:0042546: cell wall biogenesis	3.32E-03
51	GO:0019538: protein metabolic process	3.73E-03
52	GO:0006949: syncytium formation	3.73E-03
53	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.77E-03
54	GO:0006415: translational termination	4.12E-03
55	GO:1903507: negative regulation of nucleic acid-templated transcription	4.12E-03
56	GO:0018119: peptidyl-cysteine S-nitrosylation	4.12E-03
57	GO:0046856: phosphatidylinositol dephosphorylation	4.12E-03
58	GO:0016024: CDP-diacylglycerol biosynthetic process	4.52E-03
59	GO:0012501: programmed cell death	4.52E-03
60	GO:0006820: anion transport	4.52E-03
61	GO:0042545: cell wall modification	5.91E-03
62	GO:0007010: cytoskeleton organization	6.71E-03
63	GO:0006418: tRNA aminoacylation for protein translation	7.19E-03
64	GO:0031408: oxylipin biosynthetic process	7.68E-03
65	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.18E-03
66	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.69E-03
67	GO:0016310: phosphorylation	9.17E-03
68	GO:0016117: carotenoid biosynthetic process	9.75E-03
69	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.75E-03
70	GO:0000226: microtubule cytoskeleton organization	1.03E-02
71	GO:0045490: pectin catabolic process	1.05E-02
72	GO:0006520: cellular amino acid metabolic process	1.09E-02
73	GO:0009741: response to brassinosteroid	1.09E-02
74	GO:0009739: response to gibberellin	1.18E-02
75	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.26E-02
76	GO:0030163: protein catabolic process	1.38E-02
77	GO:0009828: plant-type cell wall loosening	1.44E-02
78	GO:0016125: sterol metabolic process	1.44E-02
79	GO:0046686: response to cadmium ion	1.51E-02
80	GO:0009826: unidimensional cell growth	1.57E-02
81	GO:0015995: chlorophyll biosynthetic process	1.83E-02
82	GO:0009817: defense response to fungus, incompatible interaction	1.97E-02
83	GO:0018298: protein-chromophore linkage	1.97E-02
84	GO:0016051: carbohydrate biosynthetic process	2.33E-02
85	GO:0045454: cell redox homeostasis	2.43E-02
86	GO:0006468: protein phosphorylation	2.49E-02
87	GO:0010114: response to red light	2.80E-02
88	GO:0016042: lipid catabolic process	2.91E-02
89	GO:0031347: regulation of defense response	3.20E-02
90	GO:0006812: cation transport	3.29E-02
91	GO:0009664: plant-type cell wall organization	3.29E-02
92	GO:0006813: potassium ion transport	3.46E-02
93	GO:0006096: glycolytic process	3.89E-02
94	GO:0043086: negative regulation of catalytic activity	3.89E-02
95	GO:0006396: RNA processing	4.53E-02
96	GO:0005975: carbohydrate metabolic process	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0004823: leucine-tRNA ligase activity	0.00E+00
2	GO:1990534: thermospermine oxidase activity	0.00E+00
3	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
4	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
5	GO:0004496: mevalonate kinase activity	0.00E+00
6	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.27E-04
7	GO:0008568: microtubule-severing ATPase activity	1.27E-04
8	GO:0004163: diphosphomevalonate decarboxylase activity	1.27E-04
9	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.27E-04
10	GO:0005227: calcium activated cation channel activity	1.27E-04
11	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.27E-04
12	GO:0042834: peptidoglycan binding	1.27E-04
13	GO:0005516: calmodulin binding	2.43E-04
14	GO:0004565: beta-galactosidase activity	2.83E-04
15	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	2.94E-04
16	GO:0004766: spermidine synthase activity	2.94E-04
17	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.94E-04
18	GO:0003913: DNA photolyase activity	4.86E-04
19	GO:0002161: aminoacyl-tRNA editing activity	4.86E-04
20	GO:0004075: biotin carboxylase activity	4.86E-04
21	GO:0030267: glyoxylate reductase (NADP) activity	4.86E-04
22	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.86E-04
23	GO:0004176: ATP-dependent peptidase activity	5.39E-04
24	GO:0004445: inositol-polyphosphate 5-phosphatase activity	6.95E-04
25	GO:0016149: translation release factor activity, codon specific	6.95E-04
26	GO:0043023: ribosomal large subunit binding	6.95E-04
27	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	6.95E-04
28	GO:0016836: hydro-lyase activity	9.21E-04
29	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.06E-03
30	GO:0080122: AMP transmembrane transporter activity	1.16E-03
31	GO:0003989: acetyl-CoA carboxylase activity	1.16E-03
32	GO:0008381: mechanically-gated ion channel activity	1.16E-03
33	GO:0008237: metallopeptidase activity	1.35E-03
34	GO:0005200: structural constituent of cytoskeleton	1.35E-03
35	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.43E-03
36	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.43E-03
37	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.43E-03
38	GO:0016413: O-acetyltransferase activity	1.43E-03
39	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.71E-03
40	GO:0005347: ATP transmembrane transporter activity	1.71E-03
41	GO:0015217: ADP transmembrane transporter activity	1.71E-03
42	GO:0051920: peroxiredoxin activity	1.71E-03
43	GO:0015631: tubulin binding	1.71E-03
44	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.78E-03
45	GO:0004427: inorganic diphosphatase activity	2.01E-03
46	GO:0009881: photoreceptor activity	2.01E-03
47	GO:0016887: ATPase activity	2.16E-03
48	GO:0016209: antioxidant activity	2.32E-03
49	GO:0016788: hydrolase activity, acting on ester bonds	2.81E-03
50	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.00E-03
51	GO:0003747: translation release factor activity	3.00E-03
52	GO:0005524: ATP binding	3.87E-03
53	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.52E-03
54	GO:0045330: aspartyl esterase activity	4.74E-03
55	GO:0015114: phosphate ion transmembrane transporter activity	4.93E-03
56	GO:0008131: primary amine oxidase activity	5.36E-03
57	GO:0030599: pectinesterase activity	5.73E-03
58	GO:0004190: aspartic-type endopeptidase activity	5.80E-03
59	GO:0003714: transcription corepressor activity	6.71E-03
60	GO:0008324: cation transmembrane transporter activity	7.19E-03
61	GO:0004707: MAP kinase activity	7.68E-03
62	GO:0019706: protein-cysteine S-palmitoyltransferase activity	7.68E-03
63	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.82E-03
64	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	8.18E-03
65	GO:0004812: aminoacyl-tRNA ligase activity	9.75E-03
66	GO:0008017: microtubule binding	1.10E-02
67	GO:0019901: protein kinase binding	1.20E-02
68	GO:0042802: identical protein binding	1.34E-02
69	GO:0030246: carbohydrate binding	1.79E-02
70	GO:0005507: copper ion binding	1.92E-02
71	GO:0016301: kinase activity	1.99E-02
72	GO:0004497: monooxygenase activity	2.03E-02
73	GO:0004222: metalloendopeptidase activity	2.11E-02
74	GO:0052689: carboxylic ester hydrolase activity	2.24E-02
75	GO:0003993: acid phosphatase activity	2.41E-02
76	GO:0003924: GTPase activity	2.99E-02
77	GO:0004674: protein serine/threonine kinase activity	3.01E-02
78	GO:0051287: NAD binding	3.20E-02
79	GO:0003779: actin binding	4.35E-02
80	GO:0004672: protein kinase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009570: chloroplast stroma	2.94E-07
3	GO:0009507: chloroplast	3.00E-06
4	GO:0005886: plasma membrane	1.17E-05
5	GO:0009941: chloroplast envelope	1.49E-05
6	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.27E-04
7	GO:0045298: tubulin complex	1.28E-04
8	GO:0005618: cell wall	1.86E-04
9	GO:0009536: plastid	2.73E-03
10	GO:0009505: plant-type cell wall	2.84E-03
11	GO:0009579: thylakoid	3.48E-03
12	GO:0031969: chloroplast membrane	3.61E-03
13	GO:0030659: cytoplasmic vesicle membrane	5.36E-03
14	GO:0043234: protein complex	6.25E-03
15	GO:0005875: microtubule associated complex	6.25E-03
16	GO:0010287: plastoglobule	7.22E-03
17	GO:0009534: chloroplast thylakoid	1.56E-02
18	GO:0048046: apoplast	1.81E-02
19	GO:0005874: microtubule	1.96E-02
20	GO:0009707: chloroplast outer membrane	1.97E-02
21	GO:0005743: mitochondrial inner membrane	2.79E-02
22	GO:0005576: extracellular region	2.85E-02
23	GO:0005834: heterotrimeric G-protein complex	4.07E-02
24	GO:0000139: Golgi membrane	4.33E-02
25	GO:0009706: chloroplast inner membrane	4.44E-02