co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G24490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0090042: tubulin deacetylation	0.00E+00
7	GO:0006000: fructose metabolic process	6.58E-08
8	GO:0015979: photosynthesis	1.95E-07
9	GO:0009773: photosynthetic electron transport in photosystem I	1.88E-06
10	GO:0006094: gluconeogenesis	3.52E-06
11	GO:0042549: photosystem II stabilization	3.93E-06
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.13E-06
13	GO:0018298: protein-chromophore linkage	1.65E-05
14	GO:0006002: fructose 6-phosphate metabolic process	2.30E-05
15	GO:0009735: response to cytokinin	3.62E-05
16	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.41E-05
17	GO:0080170: hydrogen peroxide transmembrane transport	5.41E-05
18	GO:0015994: chlorophyll metabolic process	9.53E-05
19	GO:0006810: transport	1.17E-04
20	GO:0009768: photosynthesis, light harvesting in photosystem I	2.31E-04
21	GO:0010480: microsporocyte differentiation	3.99E-04
22	GO:0031338: regulation of vesicle fusion	3.99E-04
23	GO:0000481: maturation of 5S rRNA	3.99E-04
24	GO:0043609: regulation of carbon utilization	3.99E-04
25	GO:0010028: xanthophyll cycle	3.99E-04
26	GO:0034337: RNA folding	3.99E-04
27	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.99E-04
28	GO:0000476: maturation of 4.5S rRNA	3.99E-04
29	GO:0000967: rRNA 5'-end processing	3.99E-04
30	GO:0071370: cellular response to gibberellin stimulus	3.99E-04
31	GO:0034220: ion transmembrane transport	4.62E-04
32	GO:0045454: cell redox homeostasis	6.37E-04
33	GO:0010206: photosystem II repair	6.76E-04
34	GO:0016122: xanthophyll metabolic process	8.66E-04
35	GO:0034470: ncRNA processing	8.66E-04
36	GO:0055129: L-proline biosynthetic process	8.66E-04
37	GO:1900871: chloroplast mRNA modification	8.66E-04
38	GO:0034755: iron ion transmembrane transport	8.66E-04
39	GO:0005983: starch catabolic process	1.22E-03
40	GO:0005986: sucrose biosynthetic process	1.38E-03
41	GO:0043617: cellular response to sucrose starvation	1.40E-03
42	GO:0045493: xylan catabolic process	1.40E-03
43	GO:0090630: activation of GTPase activity	1.40E-03
44	GO:2001295: malonyl-CoA biosynthetic process	1.40E-03
45	GO:0006518: peptide metabolic process	1.40E-03
46	GO:0006013: mannose metabolic process	1.40E-03
47	GO:0010207: photosystem II assembly	1.56E-03
48	GO:0010218: response to far red light	1.68E-03
49	GO:0005985: sucrose metabolic process	1.75E-03
50	GO:0006833: water transport	1.95E-03
51	GO:2001141: regulation of RNA biosynthetic process	2.03E-03
52	GO:0046836: glycolipid transport	2.03E-03
53	GO:1902476: chloride transmembrane transport	2.03E-03
54	GO:0051513: regulation of monopolar cell growth	2.03E-03
55	GO:0009226: nucleotide-sugar biosynthetic process	2.03E-03
56	GO:1901332: negative regulation of lateral root development	2.03E-03
57	GO:0034599: cellular response to oxidative stress	2.12E-03
58	GO:0061077: chaperone-mediated protein folding	2.62E-03
59	GO:0010023: proanthocyanidin biosynthetic process	2.73E-03
60	GO:0045727: positive regulation of translation	2.73E-03
61	GO:0030104: water homeostasis	2.73E-03
62	GO:0006546: glycine catabolic process	2.73E-03
63	GO:0010114: response to red light	2.77E-03
64	GO:0009644: response to high light intensity	3.06E-03
65	GO:0006461: protein complex assembly	3.49E-03
66	GO:0009107: lipoate biosynthetic process	3.49E-03
67	GO:0006662: glycerol ether metabolic process	4.30E-03
68	GO:0006561: proline biosynthetic process	4.32E-03
69	GO:0006751: glutathione catabolic process	4.32E-03
70	GO:0010256: endomembrane system organization	4.32E-03
71	GO:0000470: maturation of LSU-rRNA	4.32E-03
72	GO:1902456: regulation of stomatal opening	4.32E-03
73	GO:0000741: karyogamy	4.32E-03
74	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.20E-03
75	GO:0009772: photosynthetic electron transport in photosystem II	6.15E-03
76	GO:1900056: negative regulation of leaf senescence	6.15E-03
77	GO:0048437: floral organ development	6.15E-03
78	GO:0006821: chloride transport	6.15E-03
79	GO:0010196: nonphotochemical quenching	6.15E-03
80	GO:0009645: response to low light intensity stimulus	6.15E-03
81	GO:0032508: DNA duplex unwinding	7.15E-03
82	GO:0010492: maintenance of shoot apical meristem identity	7.15E-03
83	GO:0009642: response to light intensity	7.15E-03
84	GO:0009409: response to cold	7.88E-03
85	GO:0032544: plastid translation	8.21E-03
86	GO:0009932: cell tip growth	8.21E-03
87	GO:0071482: cellular response to light stimulus	8.21E-03
88	GO:0009657: plastid organization	8.21E-03
89	GO:0042128: nitrate assimilation	8.60E-03
90	GO:0009051: pentose-phosphate shunt, oxidative branch	9.31E-03
91	GO:0006098: pentose-phosphate shunt	9.31E-03
92	GO:0090305: nucleic acid phosphodiester bond hydrolysis	9.31E-03
93	GO:0048507: meristem development	9.31E-03
94	GO:0005975: carbohydrate metabolic process	1.01E-02
95	GO:0010205: photoinhibition	1.05E-02
96	GO:0009638: phototropism	1.05E-02
97	GO:1900865: chloroplast RNA modification	1.05E-02
98	GO:0006949: syncytium formation	1.17E-02
99	GO:0009299: mRNA transcription	1.17E-02
100	GO:0009637: response to blue light	1.28E-02
101	GO:0007623: circadian rhythm	1.28E-02
102	GO:0006879: cellular iron ion homeostasis	1.29E-02
103	GO:0006352: DNA-templated transcription, initiation	1.29E-02
104	GO:0009750: response to fructose	1.29E-02
105	GO:0048229: gametophyte development	1.29E-02
106	GO:0009684: indoleacetic acid biosynthetic process	1.29E-02
107	GO:0010015: root morphogenesis	1.29E-02
108	GO:0009698: phenylpropanoid metabolic process	1.29E-02
109	GO:0043085: positive regulation of catalytic activity	1.29E-02
110	GO:0015706: nitrate transport	1.43E-02
111	GO:0006006: glucose metabolic process	1.56E-02
112	GO:0018107: peptidyl-threonine phosphorylation	1.56E-02
113	GO:0009718: anthocyanin-containing compound biosynthetic process	1.56E-02
114	GO:0010075: regulation of meristem growth	1.56E-02
115	GO:0009725: response to hormone	1.56E-02
116	GO:0009767: photosynthetic electron transport chain	1.56E-02
117	GO:0008152: metabolic process	1.58E-02
118	GO:0009934: regulation of meristem structural organization	1.70E-02
119	GO:0010143: cutin biosynthetic process	1.70E-02
120	GO:0019253: reductive pentose-phosphate cycle	1.70E-02
121	GO:0010030: positive regulation of seed germination	1.84E-02
122	GO:0010053: root epidermal cell differentiation	1.84E-02
123	GO:0010167: response to nitrate	1.84E-02
124	GO:0006508: proteolysis	1.88E-02
125	GO:0009737: response to abscisic acid	2.05E-02
126	GO:0009664: plant-type cell wall organization	2.08E-02
127	GO:0006364: rRNA processing	2.23E-02
128	GO:0016575: histone deacetylation	2.30E-02
129	GO:0006418: tRNA aminoacylation for protein translation	2.30E-02
130	GO:0051603: proteolysis involved in cellular protein catabolic process	2.31E-02
131	GO:0019748: secondary metabolic process	2.63E-02
132	GO:0010017: red or far-red light signaling pathway	2.63E-02
133	GO:0006096: glycolytic process	2.64E-02
134	GO:0009723: response to ethylene	2.67E-02
135	GO:0006012: galactose metabolic process	2.79E-02
136	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.79E-02
137	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.14E-02
138	GO:0080022: primary root development	3.32E-02
139	GO:0000413: protein peptidyl-prolyl isomerization	3.32E-02
140	GO:0048653: anther development	3.32E-02
141	GO:0042631: cellular response to water deprivation	3.32E-02
142	GO:0042742: defense response to bacterium	3.34E-02
143	GO:0009742: brassinosteroid mediated signaling pathway	3.37E-02
144	GO:0010197: polar nucleus fusion	3.50E-02
145	GO:0009958: positive gravitropism	3.50E-02
146	GO:0007018: microtubule-based movement	3.69E-02
147	GO:0009646: response to absence of light	3.69E-02
148	GO:0080156: mitochondrial mRNA modification	4.07E-02
149	GO:0002229: defense response to oomycetes	4.07E-02
150	GO:0000302: response to reactive oxygen species	4.07E-02
151	GO:0010193: response to ozone	4.07E-02
152	GO:0055114: oxidation-reduction process	4.41E-02
153	GO:0032259: methylation	4.46E-02
154	GO:0030163: protein catabolic process	4.46E-02
155	GO:0071281: cellular response to iron ion	4.46E-02
156	GO:0009828: plant-type cell wall loosening	4.66E-02
157	GO:0006464: cellular protein modification process	4.66E-02
158	GO:0007165: signal transduction	4.72E-02
159	GO:0071805: potassium ion transmembrane transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
2	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
6	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
7	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
8	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
9	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
10	GO:0051721: protein phosphatase 2A binding	0.00E+00
11	GO:0042903: tubulin deacetylase activity	0.00E+00
12	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
13	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
14	GO:0043014: alpha-tubulin binding	0.00E+00
15	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
16	GO:0005528: FK506 binding	2.54E-07
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.07E-06
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.13E-06
19	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.13E-06
20	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.53E-05
21	GO:0004565: beta-galactosidase activity	1.03E-04
22	GO:0016168: chlorophyll binding	1.38E-04
23	GO:0031409: pigment binding	1.73E-04
24	GO:0004332: fructose-bisphosphate aldolase activity	2.12E-04
25	GO:0019843: rRNA binding	3.27E-04
26	GO:0004349: glutamate 5-kinase activity	3.99E-04
27	GO:0004350: glutamate-5-semialdehyde dehydrogenase activity	3.99E-04
28	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.99E-04
29	GO:0003867: 4-aminobutyrate transaminase activity	3.99E-04
30	GO:0009671: nitrate:proton symporter activity	3.99E-04
31	GO:0004185: serine-type carboxypeptidase activity	4.48E-04
32	GO:0017118: lipoyltransferase activity	8.66E-04
33	GO:0047746: chlorophyllase activity	8.66E-04
34	GO:0016868: intramolecular transferase activity, phosphotransferases	8.66E-04
35	GO:0003839: gamma-glutamylcyclotransferase activity	8.66E-04
36	GO:0005094: Rho GDP-dissociation inhibitor activity	8.66E-04
37	GO:0043425: bHLH transcription factor binding	8.66E-04
38	GO:0016415: octanoyltransferase activity	8.66E-04
39	GO:0004047: aminomethyltransferase activity	8.66E-04
40	GO:0008967: phosphoglycolate phosphatase activity	8.66E-04
41	GO:0015250: water channel activity	1.06E-03
42	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.40E-03
43	GO:0050734: hydroxycinnamoyltransferase activity	1.40E-03
44	GO:0002161: aminoacyl-tRNA editing activity	1.40E-03
45	GO:0004148: dihydrolipoyl dehydrogenase activity	1.40E-03
46	GO:0004075: biotin carboxylase activity	1.40E-03
47	GO:0005096: GTPase activator activity	1.58E-03
48	GO:0017089: glycolipid transporter activity	2.03E-03
49	GO:0019201: nucleotide kinase activity	2.03E-03
50	GO:0048487: beta-tubulin binding	2.03E-03
51	GO:0046556: alpha-L-arabinofuranosidase activity	2.73E-03
52	GO:0001053: plastid sigma factor activity	2.73E-03
53	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.73E-03
54	GO:0051861: glycolipid binding	2.73E-03
55	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.73E-03
56	GO:0016987: sigma factor activity	2.73E-03
57	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.73E-03
58	GO:0009044: xylan 1,4-beta-xylosidase activity	2.73E-03
59	GO:0005253: anion channel activity	2.73E-03
60	GO:0051537: 2 iron, 2 sulfur cluster binding	3.06E-03
61	GO:0003989: acetyl-CoA carboxylase activity	3.49E-03
62	GO:0017137: Rab GTPase binding	3.49E-03
63	GO:0004040: amidase activity	3.49E-03
64	GO:0047134: protein-disulfide reductase activity	3.69E-03
65	GO:0008200: ion channel inhibitor activity	4.32E-03
66	GO:0005247: voltage-gated chloride channel activity	4.32E-03
67	GO:2001070: starch binding	4.32E-03
68	GO:0004130: cytochrome-c peroxidase activity	4.32E-03
69	GO:0004556: alpha-amylase activity	4.32E-03
70	GO:0042578: phosphoric ester hydrolase activity	4.32E-03
71	GO:0004791: thioredoxin-disulfide reductase activity	4.62E-03
72	GO:0004559: alpha-mannosidase activity	5.20E-03
73	GO:0051920: peroxiredoxin activity	5.20E-03
74	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.20E-03
75	GO:0004017: adenylate kinase activity	5.20E-03
76	GO:0009927: histidine phosphotransfer kinase activity	5.20E-03
77	GO:0004602: glutathione peroxidase activity	5.20E-03
78	GO:0048038: quinone binding	5.31E-03
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.05E-03
80	GO:0009881: photoreceptor activity	6.15E-03
81	GO:0004564: beta-fructofuranosidase activity	7.15E-03
82	GO:0016209: antioxidant activity	7.15E-03
83	GO:0004034: aldose 1-epimerase activity	7.15E-03
84	GO:0043022: ribosome binding	7.15E-03
85	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	8.21E-03
86	GO:0016787: hydrolase activity	8.22E-03
87	GO:0004252: serine-type endopeptidase activity	9.68E-03
88	GO:0015112: nitrate transmembrane transporter activity	1.05E-02
89	GO:0004575: sucrose alpha-glucosidase activity	1.05E-02
90	GO:0005381: iron ion transmembrane transporter activity	1.05E-02
91	GO:0008047: enzyme activator activity	1.17E-02
92	GO:0044183: protein binding involved in protein folding	1.29E-02
93	GO:0000049: tRNA binding	1.43E-02
94	GO:0031072: heat shock protein binding	1.56E-02
95	GO:0000155: phosphorelay sensor kinase activity	1.56E-02
96	GO:0004022: alcohol dehydrogenase (NAD) activity	1.56E-02
97	GO:0030246: carbohydrate binding	1.68E-02
98	GO:0008266: poly(U) RNA binding	1.70E-02
99	GO:0004407: histone deacetylase activity	2.14E-02
100	GO:0015079: potassium ion transmembrane transporter activity	2.30E-02
101	GO:0004707: MAP kinase activity	2.46E-02
102	GO:0004176: ATP-dependent peptidase activity	2.46E-02
103	GO:0033612: receptor serine/threonine kinase binding	2.46E-02
104	GO:0022891: substrate-specific transmembrane transporter activity	2.79E-02
105	GO:0003727: single-stranded RNA binding	2.96E-02
106	GO:0003756: protein disulfide isomerase activity	2.96E-02
107	GO:0004812: aminoacyl-tRNA ligase activity	3.14E-02
108	GO:0015035: protein disulfide oxidoreductase activity	3.27E-02
109	GO:0016853: isomerase activity	3.69E-02
110	GO:0050662: coenzyme binding	3.69E-02
111	GO:0004871: signal transducer activity	3.85E-02
112	GO:0004518: nuclease activity	4.26E-02
113	GO:0016791: phosphatase activity	4.66E-02
114	GO:0008483: transaminase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009507: chloroplast	1.32E-32
4	GO:0009534: chloroplast thylakoid	4.94E-30
5	GO:0009535: chloroplast thylakoid membrane	8.12E-30
6	GO:0009941: chloroplast envelope	3.70E-19
7	GO:0009543: chloroplast thylakoid lumen	1.82E-18
8	GO:0009570: chloroplast stroma	3.32E-16
9	GO:0009579: thylakoid	3.44E-10
10	GO:0030095: chloroplast photosystem II	1.45E-09
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.91E-07
12	GO:0009523: photosystem II	2.66E-06
13	GO:0031977: thylakoid lumen	3.00E-06
14	GO:0009533: chloroplast stromal thylakoid	1.07E-05
15	GO:0009505: plant-type cell wall	1.38E-05
16	GO:0010287: plastoglobule	3.95E-05
17	GO:0009654: photosystem II oxygen evolving complex	2.31E-04
18	GO:0009344: nitrite reductase complex [NAD(P)H]	3.99E-04
19	GO:0009782: photosystem I antenna complex	3.99E-04
20	GO:0043674: columella	3.99E-04
21	GO:0019898: extrinsic component of membrane	6.12E-04
22	GO:0048046: apoplast	8.09E-04
23	GO:0030076: light-harvesting complex	1.75E-03
24	GO:0009531: secondary cell wall	2.03E-03
25	GO:0005775: vacuolar lumen	2.03E-03
26	GO:0042651: thylakoid membrane	2.38E-03
27	GO:0034707: chloride channel complex	4.32E-03
28	GO:0009522: photosystem I	4.62E-03
29	GO:0005773: vacuole	6.06E-03
30	GO:0042807: central vacuole	6.15E-03
31	GO:0005618: cell wall	6.28E-03
32	GO:0010319: stromule	6.84E-03
33	GO:0009538: photosystem I reaction center	7.15E-03
34	GO:0031969: chloroplast membrane	7.54E-03
35	GO:0042644: chloroplast nucleoid	9.31E-03
36	GO:0009705: plant-type vacuole membrane	1.28E-02
37	GO:0016020: membrane	1.35E-02
38	GO:0032040: small-subunit processome	1.43E-02
39	GO:0009508: plastid chromosome	1.56E-02
40	GO:0000312: plastid small ribosomal subunit	1.70E-02
41	GO:0005871: kinesin complex	3.14E-02
42	GO:0009706: chloroplast inner membrane	3.18E-02
43	GO:0009295: nucleoid	4.86E-02
44	GO:0005759: mitochondrial matrix	4.97E-02