GO Enrichment Analysis of Co-expressed Genes with
AT5G23870
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 2 | GO:0071242: cellular response to ammonium ion | 0.00E+00 |
| 3 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 6 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 7 | GO:0010207: photosystem II assembly | 2.68E-06 |
| 8 | GO:0016117: carotenoid biosynthetic process | 1.24E-05 |
| 9 | GO:0010027: thylakoid membrane organization | 4.13E-05 |
| 10 | GO:0071461: cellular response to redox state | 7.39E-05 |
| 11 | GO:1902458: positive regulation of stomatal opening | 7.39E-05 |
| 12 | GO:0009443: pyridoxal 5'-phosphate salvage | 7.39E-05 |
| 13 | GO:0042371: vitamin K biosynthetic process | 7.39E-05 |
| 14 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 1.77E-04 |
| 15 | GO:0043039: tRNA aminoacylation | 1.77E-04 |
| 16 | GO:0080040: positive regulation of cellular response to phosphate starvation | 1.77E-04 |
| 17 | GO:0080005: photosystem stoichiometry adjustment | 1.77E-04 |
| 18 | GO:0080009: mRNA methylation | 1.77E-04 |
| 19 | GO:0090391: granum assembly | 2.99E-04 |
| 20 | GO:0009152: purine ribonucleotide biosynthetic process | 4.32E-04 |
| 21 | GO:0046653: tetrahydrofolate metabolic process | 4.32E-04 |
| 22 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 4.32E-04 |
| 23 | GO:2001141: regulation of RNA biosynthetic process | 4.32E-04 |
| 24 | GO:0009765: photosynthesis, light harvesting | 5.75E-04 |
| 25 | GO:0030007: cellular potassium ion homeostasis | 5.75E-04 |
| 26 | GO:0016123: xanthophyll biosynthetic process | 7.29E-04 |
| 27 | GO:0006665: sphingolipid metabolic process | 7.29E-04 |
| 28 | GO:0016120: carotene biosynthetic process | 7.29E-04 |
| 29 | GO:0010236: plastoquinone biosynthetic process | 7.29E-04 |
| 30 | GO:0045038: protein import into chloroplast thylakoid membrane | 7.29E-04 |
| 31 | GO:0010411: xyloglucan metabolic process | 8.83E-04 |
| 32 | GO:0006655: phosphatidylglycerol biosynthetic process | 8.91E-04 |
| 33 | GO:0010190: cytochrome b6f complex assembly | 8.91E-04 |
| 34 | GO:0010019: chloroplast-nucleus signaling pathway | 1.06E-03 |
| 35 | GO:0071470: cellular response to osmotic stress | 1.06E-03 |
| 36 | GO:0042372: phylloquinone biosynthetic process | 1.06E-03 |
| 37 | GO:0009395: phospholipid catabolic process | 1.24E-03 |
| 38 | GO:0009772: photosynthetic electron transport in photosystem II | 1.24E-03 |
| 39 | GO:0010196: nonphotochemical quenching | 1.24E-03 |
| 40 | GO:0006400: tRNA modification | 1.24E-03 |
| 41 | GO:0048564: photosystem I assembly | 1.43E-03 |
| 42 | GO:2000070: regulation of response to water deprivation | 1.43E-03 |
| 43 | GO:0042546: cell wall biogenesis | 1.62E-03 |
| 44 | GO:0017004: cytochrome complex assembly | 1.63E-03 |
| 45 | GO:0071482: cellular response to light stimulus | 1.63E-03 |
| 46 | GO:0015996: chlorophyll catabolic process | 1.63E-03 |
| 47 | GO:0007186: G-protein coupled receptor signaling pathway | 1.63E-03 |
| 48 | GO:0032544: plastid translation | 1.63E-03 |
| 49 | GO:0034765: regulation of ion transmembrane transport | 1.83E-03 |
| 50 | GO:0006783: heme biosynthetic process | 1.83E-03 |
| 51 | GO:0006754: ATP biosynthetic process | 1.83E-03 |
| 52 | GO:0048589: developmental growth | 1.83E-03 |
| 53 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.05E-03 |
| 54 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.05E-03 |
| 55 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.28E-03 |
| 56 | GO:0006415: translational termination | 2.51E-03 |
| 57 | GO:0006352: DNA-templated transcription, initiation | 2.51E-03 |
| 58 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.75E-03 |
| 59 | GO:0045037: protein import into chloroplast stroma | 2.75E-03 |
| 60 | GO:0010020: chloroplast fission | 3.25E-03 |
| 61 | GO:0010167: response to nitrate | 3.51E-03 |
| 62 | GO:0071732: cellular response to nitric oxide | 3.51E-03 |
| 63 | GO:0010025: wax biosynthetic process | 3.78E-03 |
| 64 | GO:0000027: ribosomal large subunit assembly | 4.06E-03 |
| 65 | GO:0007010: cytoskeleton organization | 4.06E-03 |
| 66 | GO:0006418: tRNA aminoacylation for protein translation | 4.34E-03 |
| 67 | GO:0006633: fatty acid biosynthetic process | 4.61E-03 |
| 68 | GO:0051260: protein homooligomerization | 4.63E-03 |
| 69 | GO:0016998: cell wall macromolecule catabolic process | 4.63E-03 |
| 70 | GO:0035428: hexose transmembrane transport | 4.93E-03 |
| 71 | GO:0071369: cellular response to ethylene stimulus | 5.23E-03 |
| 72 | GO:0010091: trichome branching | 5.54E-03 |
| 73 | GO:0042335: cuticle development | 6.18E-03 |
| 74 | GO:0000413: protein peptidyl-prolyl isomerization | 6.18E-03 |
| 75 | GO:0010182: sugar mediated signaling pathway | 6.51E-03 |
| 76 | GO:0046323: glucose import | 6.51E-03 |
| 77 | GO:0009658: chloroplast organization | 7.82E-03 |
| 78 | GO:0071281: cellular response to iron ion | 8.25E-03 |
| 79 | GO:0071805: potassium ion transmembrane transport | 8.98E-03 |
| 80 | GO:0010029: regulation of seed germination | 1.01E-02 |
| 81 | GO:0042128: nitrate assimilation | 1.05E-02 |
| 82 | GO:0015995: chlorophyll biosynthetic process | 1.09E-02 |
| 83 | GO:0009817: defense response to fungus, incompatible interaction | 1.17E-02 |
| 84 | GO:0048767: root hair elongation | 1.22E-02 |
| 85 | GO:0010119: regulation of stomatal movement | 1.30E-02 |
| 86 | GO:0009853: photorespiration | 1.39E-02 |
| 87 | GO:0034599: cellular response to oxidative stress | 1.43E-02 |
| 88 | GO:0030001: metal ion transport | 1.52E-02 |
| 89 | GO:0009416: response to light stimulus | 2.55E-02 |
| 90 | GO:0009624: response to nematode | 2.64E-02 |
| 91 | GO:0009058: biosynthetic process | 3.21E-02 |
| 92 | GO:0055114: oxidation-reduction process | 3.40E-02 |
| 93 | GO:0016036: cellular response to phosphate starvation | 3.70E-02 |
| 94 | GO:0040008: regulation of growth | 3.77E-02 |
| 95 | GO:0006508: proteolysis | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0052751: GDP-mannose hydrolase activity | 0.00E+00 |
| 2 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 3 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 4 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 5 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 6 | GO:0015269: calcium-activated potassium channel activity | 0.00E+00 |
| 7 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 8 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 9 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 10 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 11 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 12 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 13 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.06E-07 |
| 14 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 7.39E-05 |
| 15 | GO:0004831: tyrosine-tRNA ligase activity | 7.39E-05 |
| 16 | GO:0004328: formamidase activity | 7.39E-05 |
| 17 | GO:0008883: glutamyl-tRNA reductase activity | 1.77E-04 |
| 18 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 1.77E-04 |
| 19 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 2.99E-04 |
| 20 | GO:0070402: NADPH binding | 2.99E-04 |
| 21 | GO:0008864: formyltetrahydrofolate deformylase activity | 2.99E-04 |
| 22 | GO:0004751: ribose-5-phosphate isomerase activity | 2.99E-04 |
| 23 | GO:0016149: translation release factor activity, codon specific | 4.32E-04 |
| 24 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 4.32E-04 |
| 25 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 4.32E-04 |
| 26 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 5.29E-04 |
| 27 | GO:0004659: prenyltransferase activity | 5.75E-04 |
| 28 | GO:0001053: plastid sigma factor activity | 5.75E-04 |
| 29 | GO:0016836: hydro-lyase activity | 5.75E-04 |
| 30 | GO:0016987: sigma factor activity | 5.75E-04 |
| 31 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 5.75E-04 |
| 32 | GO:0009922: fatty acid elongase activity | 7.29E-04 |
| 33 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 8.83E-04 |
| 34 | GO:0015271: outward rectifier potassium channel activity | 8.91E-04 |
| 35 | GO:0080030: methyl indole-3-acetate esterase activity | 8.91E-04 |
| 36 | GO:0051920: peroxiredoxin activity | 1.06E-03 |
| 37 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.38E-03 |
| 38 | GO:0016209: antioxidant activity | 1.43E-03 |
| 39 | GO:0004033: aldo-keto reductase (NADP) activity | 1.43E-03 |
| 40 | GO:0005267: potassium channel activity | 1.63E-03 |
| 41 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 1.83E-03 |
| 42 | GO:0003747: translation release factor activity | 1.83E-03 |
| 43 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 1.83E-03 |
| 44 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.78E-03 |
| 45 | GO:0005216: ion channel activity | 4.34E-03 |
| 46 | GO:0004812: aminoacyl-tRNA ligase activity | 5.86E-03 |
| 47 | GO:0005355: glucose transmembrane transporter activity | 6.84E-03 |
| 48 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 6.85E-03 |
| 49 | GO:0019901: protein kinase binding | 7.19E-03 |
| 50 | GO:0016788: hydrolase activity, acting on ester bonds | 7.97E-03 |
| 51 | GO:0008237: metallopeptidase activity | 8.98E-03 |
| 52 | GO:0005200: structural constituent of cytoskeleton | 8.98E-03 |
| 53 | GO:0004222: metalloendopeptidase activity | 1.26E-02 |
| 54 | GO:0003993: acid phosphatase activity | 1.43E-02 |
| 55 | GO:0050661: NADP binding | 1.52E-02 |
| 56 | GO:0005198: structural molecule activity | 1.80E-02 |
| 57 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.85E-02 |
| 58 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.05E-02 |
| 59 | GO:0003690: double-stranded DNA binding | 2.10E-02 |
| 60 | GO:0022857: transmembrane transporter activity | 2.53E-02 |
| 61 | GO:0016746: transferase activity, transferring acyl groups | 2.69E-02 |
| 62 | GO:0019843: rRNA binding | 3.10E-02 |
| 63 | GO:0015144: carbohydrate transmembrane transporter activity | 3.52E-02 |
| 64 | GO:0019825: oxygen binding | 3.63E-02 |
| 65 | GO:0005351: sugar:proton symporter activity | 3.83E-02 |
| 66 | GO:0042802: identical protein binding | 4.62E-02 |
| 67 | GO:0046872: metal ion binding | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.21E-17 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 4.30E-11 |
| 3 | GO:0009543: chloroplast thylakoid lumen | 3.89E-08 |
| 4 | GO:0009534: chloroplast thylakoid | 1.06E-07 |
| 5 | GO:0031969: chloroplast membrane | 8.20E-07 |
| 6 | GO:0009579: thylakoid | 1.73E-06 |
| 7 | GO:0009570: chloroplast stroma | 2.10E-06 |
| 8 | GO:0031977: thylakoid lumen | 4.49E-06 |
| 9 | GO:0009941: chloroplast envelope | 2.69E-05 |
| 10 | GO:0009515: granal stacked thylakoid | 7.39E-05 |
| 11 | GO:0009923: fatty acid elongase complex | 7.39E-05 |
| 12 | GO:0009532: plastid stroma | 2.61E-04 |
| 13 | GO:0009528: plastid inner membrane | 2.99E-04 |
| 14 | GO:0009527: plastid outer membrane | 5.75E-04 |
| 15 | GO:0009707: chloroplast outer membrane | 9.73E-04 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 1.24E-03 |
| 17 | GO:0005618: cell wall | 1.59E-03 |
| 18 | GO:0030095: chloroplast photosystem II | 3.25E-03 |
| 19 | GO:0043234: protein complex | 3.78E-03 |
| 20 | GO:0009654: photosystem II oxygen evolving complex | 4.34E-03 |
| 21 | GO:0042651: thylakoid membrane | 4.34E-03 |
| 22 | GO:0019898: extrinsic component of membrane | 7.19E-03 |
| 23 | GO:0010319: stromule | 8.98E-03 |
| 24 | GO:0048046: apoplast | 1.78E-02 |
| 25 | GO:0005856: cytoskeleton | 1.80E-02 |
| 26 | GO:0016021: integral component of membrane | 2.02E-02 |
| 27 | GO:0009706: chloroplast inner membrane | 2.64E-02 |
| 28 | GO:0010287: plastoglobule | 2.98E-02 |
| 29 | GO:0005886: plasma membrane | 3.26E-02 |
| 30 | GO:0031225: anchored component of membrane | 3.97E-02 |
| 31 | GO:0046658: anchored component of plasma membrane | 4.75E-02 |
| 32 | GO:0016020: membrane | 4.76E-02 |