co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G23860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0009773: photosynthetic electron transport in photosystem I	3.16E-07
5	GO:0080170: hydrogen peroxide transmembrane transport	2.08E-05
6	GO:0006546: glycine catabolic process	3.78E-05
7	GO:0015995: chlorophyll biosynthetic process	3.88E-05
8	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	8.88E-05
9	GO:0015979: photosynthesis	9.87E-05
10	GO:0006810: transport	1.24E-04
11	GO:0034220: ion transmembrane transport	1.58E-04
12	GO:0008152: metabolic process	2.25E-04
13	GO:0010480: microsporocyte differentiation	2.32E-04
14	GO:0000481: maturation of 5S rRNA	2.32E-04
15	GO:0033206: meiotic cytokinesis	2.32E-04
16	GO:0034337: RNA folding	2.32E-04
17	GO:0071588: hydrogen peroxide mediated signaling pathway	2.32E-04
18	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.32E-04
19	GO:0060627: regulation of vesicle-mediated transport	2.32E-04
20	GO:0000476: maturation of 4.5S rRNA	2.32E-04
21	GO:0000967: rRNA 5'-end processing	2.32E-04
22	GO:0010206: photosystem II repair	3.09E-04
23	GO:0010541: acropetal auxin transport	5.15E-04
24	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.15E-04
25	GO:0006521: regulation of cellular amino acid metabolic process	5.15E-04
26	GO:0034470: ncRNA processing	5.15E-04
27	GO:0042744: hydrogen peroxide catabolic process	6.19E-04
28	GO:0010143: cutin biosynthetic process	7.26E-04
29	GO:0045493: xylan catabolic process	8.37E-04
30	GO:2001295: malonyl-CoA biosynthetic process	8.37E-04
31	GO:0006013: mannose metabolic process	8.37E-04
32	GO:0010160: formation of animal organ boundary	8.37E-04
33	GO:0006518: peptide metabolic process	8.37E-04
34	GO:0006833: water transport	9.01E-04
35	GO:1901332: negative regulation of lateral root development	1.19E-03
36	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.19E-03
37	GO:0051513: regulation of monopolar cell growth	1.19E-03
38	GO:0051639: actin filament network formation	1.19E-03
39	GO:0034059: response to anoxia	1.19E-03
40	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.19E-03
41	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.19E-03
42	GO:0006808: regulation of nitrogen utilization	1.59E-03
43	GO:0051764: actin crosslink formation	1.59E-03
44	GO:0019464: glycine decarboxylation via glycine cleavage system	1.59E-03
45	GO:0006085: acetyl-CoA biosynthetic process	1.59E-03
46	GO:0045727: positive regulation of translation	1.59E-03
47	GO:0015994: chlorophyll metabolic process	1.59E-03
48	GO:0030104: water homeostasis	1.59E-03
49	GO:0045038: protein import into chloroplast thylakoid membrane	2.03E-03
50	GO:0006461: protein complex assembly	2.03E-03
51	GO:0009735: response to cytokinin	2.09E-03
52	GO:0000302: response to reactive oxygen species	2.40E-03
53	GO:0009416: response to light stimulus	2.45E-03
54	GO:0006751: glutathione catabolic process	2.50E-03
55	GO:0042549: photosystem II stabilization	2.50E-03
56	GO:0010256: endomembrane system organization	2.50E-03
57	GO:0060918: auxin transport	2.50E-03
58	GO:1902456: regulation of stomatal opening	2.50E-03
59	GO:0006694: steroid biosynthetic process	3.00E-03
60	GO:0010019: chloroplast-nucleus signaling pathway	3.00E-03
61	GO:2000033: regulation of seed dormancy process	3.00E-03
62	GO:0009645: response to low light intensity stimulus	3.54E-03
63	GO:0051510: regulation of unidimensional cell growth	3.54E-03
64	GO:0098869: cellular oxidant detoxification	3.54E-03
65	GO:0048437: floral organ development	3.54E-03
66	GO:0010196: nonphotochemical quenching	3.54E-03
67	GO:0032508: DNA duplex unwinding	4.10E-03
68	GO:0045010: actin nucleation	4.10E-03
69	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	4.10E-03
70	GO:0006402: mRNA catabolic process	4.10E-03
71	GO:0045490: pectin catabolic process	4.59E-03
72	GO:0032544: plastid translation	4.70E-03
73	GO:0009808: lignin metabolic process	4.70E-03
74	GO:0010233: phloem transport	4.70E-03
75	GO:0009657: plastid organization	4.70E-03
76	GO:0010218: response to far red light	4.97E-03
77	GO:0046685: response to arsenic-containing substance	5.32E-03
78	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.32E-03
79	GO:0034599: cellular response to oxidative stress	5.97E-03
80	GO:0010205: photoinhibition	5.97E-03
81	GO:0009638: phototropism	5.97E-03
82	GO:0048229: gametophyte development	7.35E-03
83	GO:0009684: indoleacetic acid biosynthetic process	7.35E-03
84	GO:0010015: root morphogenesis	7.35E-03
85	GO:0009807: lignan biosynthetic process	7.35E-03
86	GO:0009073: aromatic amino acid family biosynthetic process	7.35E-03
87	GO:0009644: response to high light intensity	7.96E-03
88	GO:0009658: chloroplast organization	8.01E-03
89	GO:0008361: regulation of cell size	8.08E-03
90	GO:0006790: sulfur compound metabolic process	8.08E-03
91	GO:0016024: CDP-diacylglycerol biosynthetic process	8.08E-03
92	GO:2000028: regulation of photoperiodism, flowering	8.84E-03
93	GO:0030036: actin cytoskeleton organization	8.84E-03
94	GO:0009718: anthocyanin-containing compound biosynthetic process	8.84E-03
95	GO:0010075: regulation of meristem growth	8.84E-03
96	GO:0009767: photosynthetic electron transport chain	8.84E-03
97	GO:0042538: hyperosmotic salinity response	9.24E-03
98	GO:0010540: basipetal auxin transport	9.62E-03
99	GO:0009934: regulation of meristem structural organization	9.62E-03
100	GO:0009723: response to ethylene	9.64E-03
101	GO:0010030: positive regulation of seed germination	1.04E-02
102	GO:0046854: phosphatidylinositol phosphorylation	1.04E-02
103	GO:0006636: unsaturated fatty acid biosynthetic process	1.13E-02
104	GO:0051017: actin filament bundle assembly	1.21E-02
105	GO:2000377: regulation of reactive oxygen species metabolic process	1.21E-02
106	GO:0009863: salicylic acid mediated signaling pathway	1.21E-02
107	GO:0010187: negative regulation of seed germination	1.21E-02
108	GO:0009768: photosynthesis, light harvesting in photosystem I	1.30E-02
109	GO:0006418: tRNA aminoacylation for protein translation	1.30E-02
110	GO:0007017: microtubule-based process	1.30E-02
111	GO:0048511: rhythmic process	1.39E-02
112	GO:0048443: stamen development	1.67E-02
113	GO:0005975: carbohydrate metabolic process	1.73E-02
114	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.77E-02
115	GO:0000413: protein peptidyl-prolyl isomerization	1.87E-02
116	GO:0048653: anther development	1.87E-02
117	GO:0042631: cellular response to water deprivation	1.87E-02
118	GO:0009741: response to brassinosteroid	1.97E-02
119	GO:0009958: positive gravitropism	1.97E-02
120	GO:0007018: microtubule-based movement	2.07E-02
121	GO:0042752: regulation of circadian rhythm	2.07E-02
122	GO:0009791: post-embryonic development	2.18E-02
123	GO:0006633: fatty acid biosynthetic process	2.23E-02
124	GO:0016132: brassinosteroid biosynthetic process	2.29E-02
125	GO:0002229: defense response to oomycetes	2.29E-02
126	GO:0030163: protein catabolic process	2.51E-02
127	GO:0071281: cellular response to iron ion	2.51E-02
128	GO:0010090: trichome morphogenesis	2.51E-02
129	GO:0009651: response to salt stress	2.57E-02
130	GO:0009639: response to red or far red light	2.62E-02
131	GO:0071805: potassium ion transmembrane transport	2.74E-02
132	GO:0071555: cell wall organization	2.75E-02
133	GO:0006979: response to oxidative stress	2.79E-02
134	GO:0010027: thylakoid membrane organization	2.98E-02
135	GO:0010029: regulation of seed germination	3.10E-02
136	GO:0010411: xyloglucan metabolic process	3.34E-02
137	GO:0018298: protein-chromophore linkage	3.59E-02
138	GO:0048481: plant ovule development	3.59E-02
139	GO:0009826: unidimensional cell growth	3.65E-02
140	GO:0010311: lateral root formation	3.72E-02
141	GO:0009834: plant-type secondary cell wall biogenesis	3.85E-02
142	GO:0009407: toxin catabolic process	3.85E-02
143	GO:0009631: cold acclimation	3.98E-02
144	GO:0048527: lateral root development	3.98E-02
145	GO:0009637: response to blue light	4.25E-02
146	GO:0009867: jasmonic acid mediated signaling pathway	4.25E-02
147	GO:0030001: metal ion transport	4.67E-02
148	GO:0080167: response to karrikin	4.69E-02
149	GO:0055085: transmembrane transport	4.74E-02
150	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
2	GO:0050614: delta24-sterol reductase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
6	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
9	GO:0005528: FK506 binding	1.75E-06
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.17E-05
11	GO:0016851: magnesium chelatase activity	2.08E-05
12	GO:0004130: cytochrome-c peroxidase activity	8.88E-05
13	GO:0045485: omega-6 fatty acid desaturase activity	2.32E-04
14	GO:0015250: water channel activity	3.89E-04
15	GO:0010283: pinoresinol reductase activity	5.15E-04
16	GO:0047746: chlorophyllase activity	5.15E-04
17	GO:0016868: intramolecular transferase activity, phosphotransferases	5.15E-04
18	GO:0003839: gamma-glutamylcyclotransferase activity	5.15E-04
19	GO:0004047: aminomethyltransferase activity	5.15E-04
20	GO:0008967: phosphoglycolate phosphatase activity	5.15E-04
21	GO:0046872: metal ion binding	5.30E-04
22	GO:0004075: biotin carboxylase activity	8.37E-04
23	GO:0050734: hydroxycinnamoyltransferase activity	8.37E-04
24	GO:0002161: aminoacyl-tRNA editing activity	8.37E-04
25	GO:0004148: dihydrolipoyl dehydrogenase activity	8.37E-04
26	GO:0001872: (1->3)-beta-D-glucan binding	1.19E-03
27	GO:0003878: ATP citrate synthase activity	1.19E-03
28	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.19E-03
29	GO:0016787: hydrolase activity	1.20E-03
30	GO:0030570: pectate lyase activity	1.42E-03
31	GO:0046556: alpha-L-arabinofuranosidase activity	1.59E-03
32	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.59E-03
33	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.59E-03
34	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.59E-03
35	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.59E-03
36	GO:0009044: xylan 1,4-beta-xylosidase activity	1.59E-03
37	GO:0003989: acetyl-CoA carboxylase activity	2.03E-03
38	GO:0004040: amidase activity	2.03E-03
39	GO:0016688: L-ascorbate peroxidase activity	2.50E-03
40	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.50E-03
41	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.50E-03
42	GO:0004559: alpha-mannosidase activity	3.00E-03
43	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.00E-03
44	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.00E-03
45	GO:0016829: lyase activity	3.37E-03
46	GO:0004033: aldo-keto reductase (NADP) activity	4.10E-03
47	GO:0005096: GTPase activator activity	4.73E-03
48	GO:0000989: transcription factor activity, transcription factor binding	5.32E-03
49	GO:0047372: acylglycerol lipase activity	7.35E-03
50	GO:0051537: 2 iron, 2 sulfur cluster binding	7.96E-03
51	GO:0004601: peroxidase activity	8.01E-03
52	GO:0008378: galactosyltransferase activity	8.08E-03
53	GO:0000049: tRNA binding	8.08E-03
54	GO:0031072: heat shock protein binding	8.84E-03
55	GO:0004565: beta-galactosidase activity	8.84E-03
56	GO:0010329: auxin efflux transmembrane transporter activity	8.84E-03
57	GO:0008266: poly(U) RNA binding	9.62E-03
58	GO:0031409: pigment binding	1.13E-02
59	GO:0004650: polygalacturonase activity	1.29E-02
60	GO:0015079: potassium ion transmembrane transporter activity	1.30E-02
61	GO:0033612: receptor serine/threonine kinase binding	1.39E-02
62	GO:0004871: signal transducer activity	1.40E-02
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.46E-02
64	GO:0003727: single-stranded RNA binding	1.67E-02
65	GO:0003756: protein disulfide isomerase activity	1.67E-02
66	GO:0004812: aminoacyl-tRNA ligase activity	1.77E-02
67	GO:0019843: rRNA binding	1.78E-02
68	GO:0004252: serine-type endopeptidase activity	1.97E-02
69	GO:0050662: coenzyme binding	2.07E-02
70	GO:0048038: quinone binding	2.29E-02
71	GO:0004518: nuclease activity	2.40E-02
72	GO:0051015: actin filament binding	2.51E-02
73	GO:0016791: phosphatase activity	2.62E-02
74	GO:0005200: structural constituent of cytoskeleton	2.74E-02
75	GO:0008483: transaminase activity	2.74E-02
76	GO:0016597: amino acid binding	2.86E-02
77	GO:0016168: chlorophyll binding	3.10E-02
78	GO:0030247: polysaccharide binding	3.34E-02
79	GO:0008236: serine-type peptidase activity	3.47E-02
80	GO:0015238: drug transmembrane transporter activity	3.72E-02
81	GO:0004222: metalloendopeptidase activity	3.85E-02
82	GO:0016788: hydrolase activity, acting on ester bonds	3.86E-02
83	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.98E-02
84	GO:0050660: flavin adenine dinucleotide binding	4.38E-02
85	GO:0003993: acid phosphatase activity	4.39E-02
86	GO:0003729: mRNA binding	4.89E-02
87	GO:0004364: glutathione transferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009534: chloroplast thylakoid	9.86E-25
3	GO:0009507: chloroplast	2.28E-21
4	GO:0009570: chloroplast stroma	3.79E-16
5	GO:0009535: chloroplast thylakoid membrane	8.31E-15
6	GO:0009543: chloroplast thylakoid lumen	4.90E-13
7	GO:0009941: chloroplast envelope	6.95E-11
8	GO:0009579: thylakoid	3.72E-09
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.68E-08
10	GO:0031977: thylakoid lumen	2.61E-07
11	GO:0010007: magnesium chelatase complex	9.11E-06
12	GO:0009505: plant-type cell wall	1.33E-05
13	GO:0030095: chloroplast photosystem II	3.72E-05
14	GO:0009654: photosystem II oxygen evolving complex	7.33E-05
15	GO:0009533: chloroplast stromal thylakoid	1.62E-04
16	GO:0019898: extrinsic component of membrane	2.16E-04
17	GO:0009344: nitrite reductase complex [NAD(P)H]	2.32E-04
18	GO:0009782: photosystem I antenna complex	2.32E-04
19	GO:0043674: columella	2.32E-04
20	GO:0010287: plastoglobule	4.66E-04
21	GO:0080085: signal recognition particle, chloroplast targeting	5.15E-04
22	GO:0042651: thylakoid membrane	1.09E-03
23	GO:0009531: secondary cell wall	1.19E-03
24	GO:0032432: actin filament bundle	1.19E-03
25	GO:0009346: citrate lyase complex	1.19E-03
26	GO:0005960: glycine cleavage complex	1.19E-03
27	GO:0005886: plasma membrane	2.05E-03
28	GO:0031209: SCAR complex	2.50E-03
29	GO:0042807: central vacuole	3.54E-03
30	GO:0005773: vacuole	3.97E-03
31	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.70E-03
32	GO:0005618: cell wall	5.18E-03
33	GO:0045298: tubulin complex	5.32E-03
34	GO:0005884: actin filament	7.35E-03
35	GO:0032040: small-subunit processome	8.08E-03
36	GO:0030076: light-harvesting complex	1.04E-02
37	GO:0005875: microtubule associated complex	1.13E-02
38	GO:0048046: apoplast	1.15E-02
39	GO:0009706: chloroplast inner membrane	1.42E-02
40	GO:0005871: kinesin complex	1.77E-02
41	GO:0016020: membrane	1.80E-02
42	GO:0009523: photosystem II	2.18E-02
43	GO:0009705: plant-type vacuole membrane	2.46E-02
44	GO:0005887: integral component of plasma membrane	2.54E-02
45	GO:0030529: intracellular ribonucleoprotein complex	2.98E-02
46	GO:0046658: anchored component of plasma membrane	3.25E-02
47	GO:0009506: plasmodesma	3.70E-02
48	GO:0015934: large ribosomal subunit	3.98E-02
49	GO:0005874: microtubule	4.53E-02
50	GO:0005576: extracellular region	4.54E-02
51	GO:0031969: chloroplast membrane	4.69E-02