co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G23540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
2	GO:0006182: cGMP biosynthetic process	0.00E+00
3	GO:0072722: response to amitrole	0.00E+00
4	GO:0042430: indole-containing compound metabolic process	0.00E+00
5	GO:0030149: sphingolipid catabolic process	0.00E+00
6	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
7	GO:0006457: protein folding	3.17E-11
8	GO:0034976: response to endoplasmic reticulum stress	2.12E-08
9	GO:0042742: defense response to bacterium	6.38E-07
10	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.68E-06
11	GO:0006102: isocitrate metabolic process	4.15E-06
12	GO:0046686: response to cadmium ion	5.19E-06
13	GO:0009617: response to bacterium	2.06E-05
14	GO:0009697: salicylic acid biosynthetic process	6.05E-05
15	GO:0006099: tricarboxylic acid cycle	8.09E-05
16	GO:0045454: cell redox homeostasis	1.11E-04
17	GO:0010150: leaf senescence	1.27E-04
18	GO:1900056: negative regulation of leaf senescence	1.62E-04
19	GO:0046104: thymidine metabolic process	2.32E-04
20	GO:0034975: protein folding in endoplasmic reticulum	2.32E-04
21	GO:0051938: L-glutamate import	2.32E-04
22	GO:1990641: response to iron ion starvation	2.32E-04
23	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.32E-04
24	GO:1990022: RNA polymerase III complex localization to nucleus	2.32E-04
25	GO:0044376: RNA polymerase II complex import to nucleus	2.32E-04
26	GO:0042964: thioredoxin reduction	2.32E-04
27	GO:0046244: salicylic acid catabolic process	2.32E-04
28	GO:0030968: endoplasmic reticulum unfolded protein response	2.55E-04
29	GO:0009615: response to virus	3.89E-04
30	GO:0009627: systemic acquired resistance	4.48E-04
31	GO:0008535: respiratory chain complex IV assembly	5.15E-04
32	GO:0045905: positive regulation of translational termination	5.15E-04
33	GO:0043091: L-arginine import	5.15E-04
34	GO:0031204: posttranslational protein targeting to membrane, translocation	5.15E-04
35	GO:0045901: positive regulation of translational elongation	5.15E-04
36	GO:0015802: basic amino acid transport	5.15E-04
37	GO:0006452: translational frameshifting	5.15E-04
38	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	5.15E-04
39	GO:0006101: citrate metabolic process	5.15E-04
40	GO:0015865: purine nucleotide transport	5.15E-04
41	GO:0019752: carboxylic acid metabolic process	5.15E-04
42	GO:0009817: defense response to fungus, incompatible interaction	5.47E-04
43	GO:0010272: response to silver ion	8.37E-04
44	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	8.37E-04
45	GO:0055074: calcium ion homeostasis	8.37E-04
46	GO:0009751: response to salicylic acid	8.76E-04
47	GO:0009408: response to heat	8.99E-04
48	GO:0015031: protein transport	1.18E-03
49	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.19E-03
50	GO:0002239: response to oomycetes	1.19E-03
51	GO:0046902: regulation of mitochondrial membrane permeability	1.19E-03
52	GO:0072334: UDP-galactose transmembrane transport	1.19E-03
53	GO:0002679: respiratory burst involved in defense response	1.19E-03
54	GO:0098542: defense response to other organism	1.20E-03
55	GO:0031348: negative regulation of defense response	1.31E-03
56	GO:0080037: negative regulation of cytokinin-activated signaling pathway	1.59E-03
57	GO:0046345: abscisic acid catabolic process	1.59E-03
58	GO:0071897: DNA biosynthetic process	1.59E-03
59	GO:0033356: UDP-L-arabinose metabolic process	1.59E-03
60	GO:0006468: protein phosphorylation	1.67E-03
61	GO:0046283: anthocyanin-containing compound metabolic process	2.03E-03
62	GO:0006097: glyoxylate cycle	2.03E-03
63	GO:0018344: protein geranylgeranylation	2.03E-03
64	GO:0010225: response to UV-C	2.03E-03
65	GO:0000304: response to singlet oxygen	2.03E-03
66	GO:2000762: regulation of phenylpropanoid metabolic process	2.03E-03
67	GO:0009620: response to fungus	2.04E-03
68	GO:0009553: embryo sac development	2.21E-03
69	GO:0000302: response to reactive oxygen species	2.40E-03
70	GO:0010193: response to ozone	2.40E-03
71	GO:0006561: proline biosynthetic process	2.50E-03
72	GO:0010405: arabinogalactan protein metabolic process	2.50E-03
73	GO:0010256: endomembrane system organization	2.50E-03
74	GO:0043248: proteasome assembly	2.50E-03
75	GO:0055114: oxidation-reduction process	2.50E-03
76	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.50E-03
77	GO:0042372: phylloquinone biosynthetic process	3.00E-03
78	GO:1902074: response to salt	3.54E-03
79	GO:0006744: ubiquinone biosynthetic process	3.54E-03
80	GO:0030091: protein repair	4.10E-03
81	GO:0030162: regulation of proteolysis	4.10E-03
82	GO:0009850: auxin metabolic process	4.10E-03
83	GO:0008219: cell death	4.50E-03
84	GO:0010204: defense response signaling pathway, resistance gene-independent	4.70E-03
85	GO:0017004: cytochrome complex assembly	4.70E-03
86	GO:0009699: phenylpropanoid biosynthetic process	4.70E-03
87	GO:0015996: chlorophyll catabolic process	4.70E-03
88	GO:0019430: removal of superoxide radicals	4.70E-03
89	GO:0010120: camalexin biosynthetic process	4.70E-03
90	GO:0009407: toxin catabolic process	4.97E-03
91	GO:0015780: nucleotide-sugar transport	5.32E-03
92	GO:0046685: response to arsenic-containing substance	5.32E-03
93	GO:0051865: protein autoubiquitination	5.32E-03
94	GO:0010205: photoinhibition	5.97E-03
95	GO:0043067: regulation of programmed cell death	5.97E-03
96	GO:0090332: stomatal closure	5.97E-03
97	GO:0030042: actin filament depolymerization	5.97E-03
98	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.97E-03
99	GO:0009688: abscisic acid biosynthetic process	6.65E-03
100	GO:0007064: mitotic sister chromatid cohesion	6.65E-03
101	GO:0006032: chitin catabolic process	6.65E-03
102	GO:0000272: polysaccharide catabolic process	7.35E-03
103	GO:0006913: nucleocytoplasmic transport	7.35E-03
104	GO:0006790: sulfur compound metabolic process	8.08E-03
105	GO:0002213: defense response to insect	8.08E-03
106	GO:0015706: nitrate transport	8.08E-03
107	GO:0009636: response to toxic substance	8.27E-03
108	GO:0009718: anthocyanin-containing compound biosynthetic process	8.84E-03
109	GO:0010075: regulation of meristem growth	8.84E-03
110	GO:0006807: nitrogen compound metabolic process	8.84E-03
111	GO:0009846: pollen germination	9.24E-03
112	GO:0009934: regulation of meristem structural organization	9.62E-03
113	GO:0006302: double-strand break repair	9.62E-03
114	GO:0002237: response to molecule of bacterial origin	9.62E-03
115	GO:0009651: response to salt stress	9.68E-03
116	GO:0009809: lignin biosynthetic process	9.93E-03
117	GO:0006486: protein glycosylation	9.93E-03
118	GO:0051603: proteolysis involved in cellular protein catabolic process	1.03E-02
119	GO:0010224: response to UV-B	1.03E-02
120	GO:0070588: calcium ion transmembrane transport	1.04E-02
121	GO:0046854: phosphatidylinositol phosphorylation	1.04E-02
122	GO:0042343: indole glucosinolate metabolic process	1.04E-02
123	GO:0010167: response to nitrate	1.04E-02
124	GO:0010200: response to chitin	1.10E-02
125	GO:0006406: mRNA export from nucleus	1.21E-02
126	GO:0005992: trehalose biosynthetic process	1.21E-02
127	GO:0009863: salicylic acid mediated signaling pathway	1.21E-02
128	GO:0048316: seed development	1.21E-02
129	GO:0010187: negative regulation of seed germination	1.21E-02
130	GO:0009626: plant-type hypersensitive response	1.25E-02
131	GO:0006874: cellular calcium ion homeostasis	1.30E-02
132	GO:0003333: amino acid transmembrane transport	1.39E-02
133	GO:0016998: cell wall macromolecule catabolic process	1.39E-02
134	GO:0019748: secondary metabolic process	1.48E-02
135	GO:0030433: ubiquitin-dependent ERAD pathway	1.48E-02
136	GO:0006511: ubiquitin-dependent protein catabolic process	1.52E-02
137	GO:0009411: response to UV	1.57E-02
138	GO:0010227: floral organ abscission	1.57E-02
139	GO:0032259: methylation	1.64E-02
140	GO:0009306: protein secretion	1.67E-02
141	GO:0010089: xylem development	1.67E-02
142	GO:0010584: pollen exine formation	1.67E-02
143	GO:0008033: tRNA processing	1.87E-02
144	GO:0010118: stomatal movement	1.87E-02
145	GO:0010197: polar nucleus fusion	1.97E-02
146	GO:0048868: pollen tube development	1.97E-02
147	GO:0006520: cellular amino acid metabolic process	1.97E-02
148	GO:0009790: embryo development	2.08E-02
149	GO:0009851: auxin biosynthetic process	2.18E-02
150	GO:0080156: mitochondrial mRNA modification	2.29E-02
151	GO:0006413: translational initiation	2.29E-02
152	GO:0002229: defense response to oomycetes	2.29E-02
153	GO:0007264: small GTPase mediated signal transduction	2.40E-02
154	GO:0030163: protein catabolic process	2.51E-02
155	GO:0009567: double fertilization forming a zygote and endosperm	2.62E-02
156	GO:0010252: auxin homeostasis	2.62E-02
157	GO:0006464: cellular protein modification process	2.62E-02
158	GO:0006952: defense response	2.76E-02
159	GO:0006979: response to oxidative stress	2.79E-02
160	GO:0007166: cell surface receptor signaling pathway	2.81E-02
161	GO:0009816: defense response to bacterium, incompatible interaction	3.10E-02
162	GO:0042128: nitrate assimilation	3.22E-02
163	GO:0006906: vesicle fusion	3.22E-02
164	GO:0006888: ER to Golgi vesicle-mediated transport	3.34E-02
165	GO:0016311: dephosphorylation	3.47E-02
166	GO:0016049: cell growth	3.47E-02
167	GO:0030244: cellulose biosynthetic process	3.59E-02
168	GO:0009832: plant-type cell wall biogenesis	3.72E-02
169	GO:0006499: N-terminal protein myristoylation	3.85E-02
170	GO:0010043: response to zinc ion	3.98E-02
171	GO:0007568: aging	3.98E-02
172	GO:0048527: lateral root development	3.98E-02
173	GO:0009860: pollen tube growth	4.08E-02
174	GO:0006970: response to osmotic stress	4.08E-02
175	GO:0000724: double-strand break repair via homologous recombination	4.12E-02
176	GO:0045087: innate immune response	4.25E-02
177	GO:0006839: mitochondrial transport	4.67E-02
178	GO:0006887: exocytosis	4.81E-02
179	GO:0016192: vesicle-mediated transport	4.93E-02
180	GO:0042542: response to hydrogen peroxide	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0046424: ferulate 5-hydroxylase activity	0.00E+00
3	GO:0051670: inulinase activity	0.00E+00
4	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
5	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
6	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
7	GO:0003756: protein disulfide isomerase activity	1.10E-07
8	GO:0051082: unfolded protein binding	2.55E-06
9	GO:0004298: threonine-type endopeptidase activity	2.74E-06
10	GO:0005524: ATP binding	9.06E-06
11	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.08E-05
12	GO:0005460: UDP-glucose transmembrane transporter activity	2.08E-05
13	GO:0005509: calcium ion binding	2.58E-05
14	GO:0005459: UDP-galactose transmembrane transporter activity	6.05E-05
15	GO:0004674: protein serine/threonine kinase activity	1.39E-04
16	GO:0031219: levanase activity	2.32E-04
17	GO:0051669: fructan beta-fructosidase activity	2.32E-04
18	GO:0004797: thymidine kinase activity	2.32E-04
19	GO:0048037: cofactor binding	2.32E-04
20	GO:0008909: isochorismate synthase activity	2.32E-04
21	GO:0008233: peptidase activity	4.37E-04
22	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.15E-04
23	GO:0003994: aconitate hydratase activity	5.15E-04
24	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.15E-04
25	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	6.58E-04
26	GO:0004383: guanylate cyclase activity	8.37E-04
27	GO:0000030: mannosyltransferase activity	8.37E-04
28	GO:0005093: Rab GDP-dissociation inhibitor activity	8.37E-04
29	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.37E-04
30	GO:0004148: dihydrolipoyl dehydrogenase activity	8.37E-04
31	GO:0019003: GDP binding	8.37E-04
32	GO:0015189: L-lysine transmembrane transporter activity	1.19E-03
33	GO:0015181: arginine transmembrane transporter activity	1.19E-03
34	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.19E-03
35	GO:0005507: copper ion binding	1.22E-03
36	GO:0010279: indole-3-acetic acid amido synthetase activity	1.59E-03
37	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.59E-03
38	GO:0005313: L-glutamate transmembrane transporter activity	1.59E-03
39	GO:0004031: aldehyde oxidase activity	1.59E-03
40	GO:0050302: indole-3-acetaldehyde oxidase activity	1.59E-03
41	GO:0050660: flavin adenine dinucleotide binding	1.99E-03
42	GO:0005471: ATP:ADP antiporter activity	2.03E-03
43	GO:0002020: protease binding	2.03E-03
44	GO:0010294: abscisic acid glucosyltransferase activity	2.03E-03
45	GO:0017137: Rab GTPase binding	2.03E-03
46	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.50E-03
47	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.50E-03
48	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.50E-03
49	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.00E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.00E-03
51	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.00E-03
52	GO:0008320: protein transmembrane transporter activity	3.54E-03
53	GO:0016831: carboxy-lyase activity	3.54E-03
54	GO:0003924: GTPase activity	4.01E-03
55	GO:0030247: polysaccharide binding	4.07E-03
56	GO:0043022: ribosome binding	4.10E-03
57	GO:0030246: carbohydrate binding	4.13E-03
58	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.28E-03
59	GO:0015112: nitrate transmembrane transporter activity	5.97E-03
60	GO:0015174: basic amino acid transmembrane transporter activity	5.97E-03
61	GO:0045309: protein phosphorylated amino acid binding	5.97E-03
62	GO:0051539: 4 iron, 4 sulfur cluster binding	6.50E-03
63	GO:0004568: chitinase activity	6.65E-03
64	GO:0008171: O-methyltransferase activity	6.65E-03
65	GO:0004364: glutathione transferase activity	7.07E-03
66	GO:0016301: kinase activity	7.13E-03
67	GO:0004129: cytochrome-c oxidase activity	7.35E-03
68	GO:0019904: protein domain specific binding	7.35E-03
69	GO:0008378: galactosyltransferase activity	8.08E-03
70	GO:0031072: heat shock protein binding	8.84E-03
71	GO:0005388: calcium-transporting ATPase activity	8.84E-03
72	GO:0004022: alcohol dehydrogenase (NAD) activity	8.84E-03
73	GO:0005217: intracellular ligand-gated ion channel activity	1.04E-02
74	GO:0008061: chitin binding	1.04E-02
75	GO:0004970: ionotropic glutamate receptor activity	1.04E-02
76	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.29E-02
77	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.29E-02
78	GO:0015035: protein disulfide oxidoreductase activity	1.46E-02
79	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.46E-02
80	GO:0016758: transferase activity, transferring hexosyl groups	1.73E-02
81	GO:0009055: electron carrier activity	1.89E-02
82	GO:0008080: N-acetyltransferase activity	1.97E-02
83	GO:0030170: pyridoxal phosphate binding	1.97E-02
84	GO:0004791: thioredoxin-disulfide reductase activity	2.07E-02
85	GO:0016853: isomerase activity	2.07E-02
86	GO:0010181: FMN binding	2.07E-02
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.51E-02
88	GO:0005506: iron ion binding	2.69E-02
89	GO:0008237: metallopeptidase activity	2.74E-02
90	GO:0008194: UDP-glycosyltransferase activity	2.75E-02
91	GO:0003743: translation initiation factor activity	2.87E-02
92	GO:0051213: dioxygenase activity	2.98E-02
93	GO:0042802: identical protein binding	3.12E-02
94	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.22E-02
95	GO:0004683: calmodulin-dependent protein kinase activity	3.34E-02
96	GO:0046872: metal ion binding	3.49E-02
97	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.59E-02
98	GO:0008168: methyltransferase activity	3.65E-02
99	GO:0005096: GTPase activator activity	3.72E-02
100	GO:0015238: drug transmembrane transporter activity	3.72E-02
101	GO:0050897: cobalt ion binding	3.98E-02
102	GO:0003746: translation elongation factor activity	4.25E-02
103	GO:0003697: single-stranded DNA binding	4.25E-02
104	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.25E-02
105	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.39E-02
106	GO:0000149: SNARE binding	4.53E-02
107	GO:0004497: monooxygenase activity	4.69E-02
108	GO:0003729: mRNA binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0005784: Sec61 translocon complex	0.00E+00
2	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
3	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
4	GO:0005783: endoplasmic reticulum	6.83E-14
5	GO:0005788: endoplasmic reticulum lumen	2.38E-13
6	GO:0005886: plasma membrane	4.22E-07
7	GO:0000502: proteasome complex	8.65E-07
8	GO:0005829: cytosol	1.24E-06
9	GO:0005839: proteasome core complex	2.74E-06
10	GO:0005774: vacuolar membrane	3.35E-05
11	GO:0005746: mitochondrial respiratory chain	6.05E-05
12	GO:0005789: endoplasmic reticulum membrane	1.40E-04
13	GO:0019773: proteasome core complex, alpha-subunit complex	2.55E-04
14	GO:0030134: ER to Golgi transport vesicle	5.15E-04
15	GO:0016020: membrane	6.38E-04
16	GO:0030176: integral component of endoplasmic reticulum membrane	8.11E-04
17	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.19E-03
18	GO:0005794: Golgi apparatus	1.77E-03
19	GO:0016592: mediator complex	2.56E-03
20	GO:0030173: integral component of Golgi membrane	3.00E-03
21	GO:0005801: cis-Golgi network	3.00E-03
22	GO:0005773: vacuole	3.97E-03
23	GO:0048046: apoplast	4.23E-03
24	GO:0000326: protein storage vacuole	4.70E-03
25	GO:0005740: mitochondrial envelope	6.65E-03
26	GO:0008541: proteasome regulatory particle, lid subcomplex	7.35E-03
27	GO:0016021: integral component of membrane	1.14E-02
28	GO:0005618: cell wall	1.38E-02
29	GO:0005741: mitochondrial outer membrane	1.39E-02
30	GO:0005737: cytoplasm	1.42E-02
31	GO:0015629: actin cytoskeleton	1.57E-02
32	GO:0005743: mitochondrial inner membrane	1.58E-02
33	GO:0009506: plasmodesma	1.75E-02
34	GO:0043231: intracellular membrane-bounded organelle	1.95E-02
35	GO:0005759: mitochondrial matrix	2.23E-02
36	GO:0022626: cytosolic ribosome	3.35E-02
37	GO:0019005: SCF ubiquitin ligase complex	3.59E-02
38	GO:0009536: plastid	3.71E-02
39	GO:0009505: plant-type cell wall	3.82E-02
40	GO:0009507: chloroplast	3.99E-02
41	GO:0005819: spindle	4.53E-02
42	GO:0031201: SNARE complex	4.81E-02