co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G23210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
7	GO:0015979: photosynthesis	8.80E-09
8	GO:0009773: photosynthetic electron transport in photosystem I	2.17E-08
9	GO:0018298: protein-chromophore linkage	1.26E-05
10	GO:0080170: hydrogen peroxide transmembrane transport	4.74E-05
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.74E-05
12	GO:0006810: transport	7.68E-05
13	GO:0015994: chlorophyll metabolic process	8.40E-05
14	GO:0006546: glycine catabolic process	8.40E-05
15	GO:0006094: gluconeogenesis	8.76E-05
16	GO:0009768: photosynthesis, light harvesting in photosystem I	1.98E-04
17	GO:0009645: response to low light intensity stimulus	3.30E-04
18	GO:0010028: xanthophyll cycle	3.70E-04
19	GO:0034337: RNA folding	3.70E-04
20	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.70E-04
21	GO:0043266: regulation of potassium ion transport	3.70E-04
22	GO:0071370: cellular response to gibberellin stimulus	3.70E-04
23	GO:0031338: regulation of vesicle fusion	3.70E-04
24	GO:0000481: maturation of 5S rRNA	3.70E-04
25	GO:2000021: regulation of ion homeostasis	3.70E-04
26	GO:0034220: ion transmembrane transport	4.00E-04
27	GO:0009644: response to high light intensity	4.25E-04
28	GO:0010206: photosystem II repair	6.07E-04
29	GO:0016122: xanthophyll metabolic process	8.05E-04
30	GO:0030388: fructose 1,6-bisphosphate metabolic process	8.05E-04
31	GO:0010541: acropetal auxin transport	8.05E-04
32	GO:0001736: establishment of planar polarity	8.05E-04
33	GO:0015995: chlorophyll biosynthetic process	1.13E-03
34	GO:0010411: xyloglucan metabolic process	1.13E-03
35	GO:0006000: fructose metabolic process	1.30E-03
36	GO:0006518: peptide metabolic process	1.30E-03
37	GO:0010160: formation of animal organ boundary	1.30E-03
38	GO:0045493: xylan catabolic process	1.30E-03
39	GO:0090630: activation of GTPase activity	1.30E-03
40	GO:2001295: malonyl-CoA biosynthetic process	1.30E-03
41	GO:0010143: cutin biosynthetic process	1.40E-03
42	GO:0010218: response to far red light	1.45E-03
43	GO:0005985: sucrose metabolic process	1.57E-03
44	GO:0009637: response to blue light	1.73E-03
45	GO:0006833: water transport	1.74E-03
46	GO:0051513: regulation of monopolar cell growth	1.88E-03
47	GO:0071484: cellular response to light intensity	1.88E-03
48	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.88E-03
49	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.88E-03
50	GO:0009226: nucleotide-sugar biosynthetic process	1.88E-03
51	GO:1901332: negative regulation of lateral root development	1.88E-03
52	GO:0046836: glycolipid transport	1.88E-03
53	GO:0009735: response to cytokinin	2.01E-03
54	GO:0061077: chaperone-mediated protein folding	2.35E-03
55	GO:0010023: proanthocyanidin biosynthetic process	2.52E-03
56	GO:0019464: glycine decarboxylation via glycine cleavage system	2.52E-03
57	GO:0045727: positive regulation of translation	2.52E-03
58	GO:0030104: water homeostasis	2.52E-03
59	GO:0009414: response to water deprivation	3.03E-03
60	GO:1902183: regulation of shoot apical meristem development	3.23E-03
61	GO:0010158: abaxial cell fate specification	3.23E-03
62	GO:2000762: regulation of phenylpropanoid metabolic process	3.23E-03
63	GO:0010117: photoprotection	3.23E-03
64	GO:0006461: protein complex assembly	3.23E-03
65	GO:0008152: metabolic process	3.59E-03
66	GO:0009958: positive gravitropism	3.84E-03
67	GO:0006751: glutathione catabolic process	3.99E-03
68	GO:0042549: photosystem II stabilization	3.99E-03
69	GO:0010256: endomembrane system organization	3.99E-03
70	GO:0060918: auxin transport	3.99E-03
71	GO:1902456: regulation of stomatal opening	3.99E-03
72	GO:0000741: karyogamy	3.99E-03
73	GO:0009612: response to mechanical stimulus	4.81E-03
74	GO:0009772: photosynthetic electron transport in photosystem II	5.68E-03
75	GO:1900056: negative regulation of leaf senescence	5.68E-03
76	GO:0010196: nonphotochemical quenching	5.68E-03
77	GO:0009723: response to ethylene	5.71E-03
78	GO:0009409: response to cold	6.16E-03
79	GO:0008610: lipid biosynthetic process	6.61E-03
80	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.61E-03
81	GO:0032508: DNA duplex unwinding	6.61E-03
82	GO:0010492: maintenance of shoot apical meristem identity	6.61E-03
83	GO:0010027: thylakoid membrane organization	6.87E-03
84	GO:0009932: cell tip growth	7.58E-03
85	GO:0006002: fructose 6-phosphate metabolic process	7.58E-03
86	GO:0071482: cellular response to light stimulus	7.58E-03
87	GO:0009657: plastid organization	7.58E-03
88	GO:0032544: plastid translation	7.58E-03
89	GO:0005975: carbohydrate metabolic process	7.88E-03
90	GO:0045454: cell redox homeostasis	8.35E-03
91	GO:0009051: pentose-phosphate shunt, oxidative branch	8.60E-03
92	GO:0006098: pentose-phosphate shunt	8.60E-03
93	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.60E-03
94	GO:2000024: regulation of leaf development	8.60E-03
95	GO:0048507: meristem development	8.60E-03
96	GO:0010311: lateral root formation	9.44E-03
97	GO:0010205: photoinhibition	9.67E-03
98	GO:0009638: phototropism	9.67E-03
99	GO:0006779: porphyrin-containing compound biosynthetic process	9.67E-03
100	GO:1900865: chloroplast RNA modification	9.67E-03
101	GO:0006782: protoporphyrinogen IX biosynthetic process	1.08E-02
102	GO:0048829: root cap development	1.08E-02
103	GO:0007623: circadian rhythm	1.11E-02
104	GO:0009684: indoleacetic acid biosynthetic process	1.19E-02
105	GO:0010015: root morphogenesis	1.19E-02
106	GO:0034599: cellular response to oxidative stress	1.19E-02
107	GO:0048765: root hair cell differentiation	1.19E-02
108	GO:0008361: regulation of cell size	1.32E-02
109	GO:0016024: CDP-diacylglycerol biosynthetic process	1.32E-02
110	GO:0009718: anthocyanin-containing compound biosynthetic process	1.44E-02
111	GO:0009767: photosynthetic electron transport chain	1.44E-02
112	GO:0005986: sucrose biosynthetic process	1.44E-02
113	GO:0006006: glucose metabolic process	1.44E-02
114	GO:0010114: response to red light	1.47E-02
115	GO:0009926: auxin polar transport	1.47E-02
116	GO:0042546: cell wall biogenesis	1.53E-02
117	GO:0010540: basipetal auxin transport	1.57E-02
118	GO:0019253: reductive pentose-phosphate cycle	1.57E-02
119	GO:0010053: root epidermal cell differentiation	1.70E-02
120	GO:0010030: positive regulation of seed germination	1.70E-02
121	GO:0009734: auxin-activated signaling pathway	1.92E-02
122	GO:0009944: polarity specification of adaxial/abaxial axis	1.98E-02
123	GO:0006418: tRNA aminoacylation for protein translation	2.12E-02
124	GO:0007017: microtubule-based process	2.12E-02
125	GO:0006857: oligopeptide transport	2.13E-02
126	GO:0048511: rhythmic process	2.27E-02
127	GO:0003333: amino acid transmembrane transport	2.27E-02
128	GO:0006096: glycolytic process	2.36E-02
129	GO:0035428: hexose transmembrane transport	2.42E-02
130	GO:0080167: response to karrikin	2.53E-02
131	GO:0006012: galactose metabolic process	2.58E-02
132	GO:0048443: stamen development	2.73E-02
133	GO:0009306: protein secretion	2.73E-02
134	GO:0071555: cell wall organization	2.77E-02
135	GO:0042742: defense response to bacterium	2.77E-02
136	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.90E-02
137	GO:0042631: cellular response to water deprivation	3.06E-02
138	GO:0080022: primary root development	3.06E-02
139	GO:0000413: protein peptidyl-prolyl isomerization	3.06E-02
140	GO:0010154: fruit development	3.23E-02
141	GO:0006662: glycerol ether metabolic process	3.23E-02
142	GO:0010197: polar nucleus fusion	3.23E-02
143	GO:0046323: glucose import	3.23E-02
144	GO:0009733: response to auxin	3.35E-02
145	GO:0042752: regulation of circadian rhythm	3.40E-02
146	GO:0015986: ATP synthesis coupled proton transport	3.40E-02
147	GO:0007018: microtubule-based movement	3.40E-02
148	GO:0080156: mitochondrial mRNA modification	3.75E-02
149	GO:0071554: cell wall organization or biogenesis	3.75E-02
150	GO:0002229: defense response to oomycetes	3.75E-02
151	GO:0000302: response to reactive oxygen species	3.75E-02
152	GO:0010193: response to ozone	3.75E-02
153	GO:0055085: transmembrane transport	3.83E-02
154	GO:0007165: signal transduction	3.85E-02
155	GO:0032259: methylation	3.88E-02
156	GO:0009630: gravitropism	3.93E-02
157	GO:1901657: glycosyl compound metabolic process	4.11E-02
158	GO:0030163: protein catabolic process	4.11E-02
159	GO:0071281: cellular response to iron ion	4.11E-02
160	GO:0009639: response to red or far red light	4.30E-02
161	GO:0071805: potassium ion transmembrane transport	4.49E-02
162	GO:0001666: response to hypoxia	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
6	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
7	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
10	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
11	GO:0005528: FK506 binding	7.71E-06
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.83E-05
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.40E-05
14	GO:0016168: chlorophyll binding	1.13E-04
15	GO:0031409: pigment binding	1.47E-04
16	GO:0004332: fructose-bisphosphate aldolase activity	1.88E-04
17	GO:0004017: adenylate kinase activity	2.54E-04
18	GO:0004856: xylulokinase activity	3.70E-04
19	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.70E-04
20	GO:0003867: 4-aminobutyrate transaminase activity	3.70E-04
21	GO:0016868: intramolecular transferase activity, phosphotransferases	8.05E-04
22	GO:0003839: gamma-glutamylcyclotransferase activity	8.05E-04
23	GO:0005094: Rho GDP-dissociation inhibitor activity	8.05E-04
24	GO:0004047: aminomethyltransferase activity	8.05E-04
25	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.05E-04
26	GO:0008967: phosphoglycolate phosphatase activity	8.05E-04
27	GO:0047746: chlorophyllase activity	8.05E-04
28	GO:0015250: water channel activity	9.22E-04
29	GO:0050734: hydroxycinnamoyltransferase activity	1.30E-03
30	GO:0002161: aminoacyl-tRNA editing activity	1.30E-03
31	GO:0004075: biotin carboxylase activity	1.30E-03
32	GO:0030267: glyoxylate reductase (NADP) activity	1.30E-03
33	GO:0005096: GTPase activator activity	1.37E-03
34	GO:0017089: glycolipid transporter activity	1.88E-03
35	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.88E-03
36	GO:0019201: nucleotide kinase activity	1.88E-03
37	GO:0016851: magnesium chelatase activity	1.88E-03
38	GO:0010011: auxin binding	2.52E-03
39	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.52E-03
40	GO:0051861: glycolipid binding	2.52E-03
41	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.52E-03
42	GO:0010328: auxin influx transmembrane transporter activity	2.52E-03
43	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.52E-03
44	GO:0009044: xylan 1,4-beta-xylosidase activity	2.52E-03
45	GO:0046556: alpha-L-arabinofuranosidase activity	2.52E-03
46	GO:0003989: acetyl-CoA carboxylase activity	3.23E-03
47	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.23E-03
48	GO:0017137: Rab GTPase binding	3.23E-03
49	GO:0004040: amidase activity	3.23E-03
50	GO:0004130: cytochrome-c peroxidase activity	3.99E-03
51	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.99E-03
52	GO:0042578: phosphoric ester hydrolase activity	3.99E-03
53	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.99E-03
54	GO:0008200: ion channel inhibitor activity	3.99E-03
55	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.16E-03
56	GO:0048038: quinone binding	4.74E-03
57	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.74E-03
58	GO:0051920: peroxiredoxin activity	4.81E-03
59	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.81E-03
60	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.81E-03
61	GO:0004602: glutathione peroxidase activity	4.81E-03
62	GO:0009881: photoreceptor activity	5.68E-03
63	GO:0004620: phospholipase activity	5.68E-03
64	GO:0016791: phosphatase activity	5.75E-03
65	GO:0004564: beta-fructofuranosidase activity	6.61E-03
66	GO:0016209: antioxidant activity	6.61E-03
67	GO:0004034: aldose 1-epimerase activity	6.61E-03
68	GO:0015078: hydrogen ion transmembrane transporter activity	7.58E-03
69	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.10E-03
70	GO:0004575: sucrose alpha-glucosidase activity	9.67E-03
71	GO:0044183: protein binding involved in protein folding	1.19E-02
72	GO:0008378: galactosyltransferase activity	1.32E-02
73	GO:0000049: tRNA binding	1.32E-02
74	GO:0000155: phosphorelay sensor kinase activity	1.44E-02
75	GO:0004565: beta-galactosidase activity	1.44E-02
76	GO:0010329: auxin efflux transmembrane transporter activity	1.44E-02
77	GO:0004022: alcohol dehydrogenase (NAD) activity	1.44E-02
78	GO:0031072: heat shock protein binding	1.44E-02
79	GO:0008266: poly(U) RNA binding	1.57E-02
80	GO:0051537: 2 iron, 2 sulfur cluster binding	1.60E-02
81	GO:0016787: hydrolase activity	1.64E-02
82	GO:0015293: symporter activity	1.66E-02
83	GO:0015079: potassium ion transmembrane transporter activity	2.12E-02
84	GO:0004176: ATP-dependent peptidase activity	2.27E-02
85	GO:0005509: calcium ion binding	2.42E-02
86	GO:0022891: substrate-specific transmembrane transporter activity	2.58E-02
87	GO:0005515: protein binding	2.64E-02
88	GO:0003756: protein disulfide isomerase activity	2.73E-02
89	GO:0003727: single-stranded RNA binding	2.73E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	2.90E-02
91	GO:0047134: protein-disulfide reductase activity	2.90E-02
92	GO:0005215: transporter activity	3.27E-02
93	GO:0004871: signal transducer activity	3.35E-02
94	GO:0004791: thioredoxin-disulfide reductase activity	3.40E-02
95	GO:0016853: isomerase activity	3.40E-02
96	GO:0005355: glucose transmembrane transporter activity	3.40E-02
97	GO:0050662: coenzyme binding	3.40E-02
98	GO:0019843: rRNA binding	3.55E-02
99	GO:0004518: nuclease activity	3.93E-02
100	GO:0004252: serine-type endopeptidase activity	3.94E-02
101	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.11E-02
102	GO:0008483: transaminase activity	4.49E-02
103	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.49E-02
104	GO:0005200: structural constituent of cytoskeleton	4.49E-02
105	GO:0016413: O-acetyltransferase activity	4.68E-02
106	GO:0016597: amino acid binding	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	3.56E-35
4	GO:0009507: chloroplast	3.57E-35
5	GO:0009535: chloroplast thylakoid membrane	1.00E-30
6	GO:0009570: chloroplast stroma	6.59E-17
7	GO:0009543: chloroplast thylakoid lumen	9.36E-16
8	GO:0009941: chloroplast envelope	3.85E-14
9	GO:0030095: chloroplast photosystem II	1.13E-11
10	GO:0009579: thylakoid	1.82E-08
11	GO:0031977: thylakoid lumen	9.75E-08
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.59E-07
13	GO:0009533: chloroplast stromal thylakoid	8.89E-06
14	GO:0009654: photosystem II oxygen evolving complex	9.61E-06
15	GO:0010287: plastoglobule	2.94E-05
16	GO:0019898: extrinsic component of membrane	4.45E-05
17	GO:0009523: photosystem II	4.45E-05
18	GO:0009782: photosystem I antenna complex	3.70E-04
19	GO:0043674: columella	3.70E-04
20	GO:0009344: nitrite reductase complex [NAD(P)H]	3.70E-04
21	GO:0016020: membrane	3.98E-04
22	GO:0048046: apoplast	5.62E-04
23	GO:0010007: magnesium chelatase complex	1.30E-03
24	GO:0030076: light-harvesting complex	1.57E-03
25	GO:0009505: plant-type cell wall	1.76E-03
26	GO:0009531: secondary cell wall	1.88E-03
27	GO:0005775: vacuolar lumen	1.88E-03
28	GO:0005960: glycine cleavage complex	1.88E-03
29	GO:0042651: thylakoid membrane	2.13E-03
30	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	3.99E-03
31	GO:0009522: photosystem I	4.13E-03
32	GO:0005618: cell wall	4.61E-03
33	GO:0042807: central vacuole	5.68E-03
34	GO:0009986: cell surface	5.68E-03
35	GO:0010319: stromule	6.11E-03
36	GO:0031969: chloroplast membrane	6.35E-03
37	GO:0009538: photosystem I reaction center	6.61E-03
38	GO:0016021: integral component of membrane	8.08E-03
39	GO:0008180: COP9 signalosome	8.60E-03
40	GO:0042644: chloroplast nucleoid	8.60E-03
41	GO:0045298: tubulin complex	8.60E-03
42	GO:0009705: plant-type vacuole membrane	1.11E-02
43	GO:0032040: small-subunit processome	1.32E-02
44	GO:0009508: plastid chromosome	1.44E-02
45	GO:0005871: kinesin complex	2.90E-02
46	GO:0009295: nucleoid	4.49E-02