Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G22920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061157: mRNA destabilization0.00E+00
2GO:2000505: regulation of energy homeostasis0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:1901698: response to nitrogen compound0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0015979: photosynthesis1.09E-07
10GO:0009735: response to cytokinin4.15E-06
11GO:0009773: photosynthetic electron transport in photosystem I4.25E-06
12GO:0042549: photosystem II stabilization7.50E-06
13GO:0006833: water transport1.68E-05
14GO:0018298: protein-chromophore linkage3.97E-05
15GO:0010206: photosystem II repair5.65E-05
16GO:0034220: ion transmembrane transport7.26E-05
17GO:0080170: hydrogen peroxide transmembrane transport8.30E-05
18GO:0010114: response to red light1.19E-04
19GO:0006810: transport1.34E-04
20GO:0006546: glycine catabolic process1.44E-04
21GO:0010207: photosystem II assembly2.10E-04
22GO:0007623: circadian rhythm2.43E-04
23GO:0009768: photosynthesis, light harvesting in photosystem I3.79E-04
24GO:0010019: chloroplast-nucleus signaling pathway4.15E-04
25GO:0010218: response to far red light4.32E-04
26GO:0071588: hydrogen peroxide mediated signaling pathway5.12E-04
27GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.12E-04
28GO:0000476: maturation of 4.5S rRNA5.12E-04
29GO:0000967: rRNA 5'-end processing5.12E-04
30GO:0070509: calcium ion import5.12E-04
31GO:0007263: nitric oxide mediated signal transduction5.12E-04
32GO:0071370: cellular response to gibberellin stimulus5.12E-04
33GO:0046520: sphingoid biosynthetic process5.12E-04
34GO:0000481: maturation of 5S rRNA5.12E-04
35GO:0034337: RNA folding5.12E-04
36GO:0009637: response to blue light5.37E-04
37GO:0046620: regulation of organ growth6.64E-04
38GO:0009926: auxin polar transport7.94E-04
39GO:0009657: plastid organization8.09E-04
40GO:0032544: plastid translation8.09E-04
41GO:0009932: cell tip growth8.09E-04
42GO:0009958: positive gravitropism8.14E-04
43GO:0009644: response to high light intensity8.94E-04
44GO:0034470: ncRNA processing1.10E-03
45GO:0010541: acropetal auxin transport1.10E-03
46GO:0001736: establishment of planar polarity1.10E-03
47GO:0034755: iron ion transmembrane transport1.10E-03
48GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.10E-03
49GO:0006521: regulation of cellular amino acid metabolic process1.10E-03
50GO:0030388: fructose 1,6-bisphosphate metabolic process1.10E-03
51GO:0009638: phototropism1.14E-03
52GO:0045490: pectin catabolic process1.14E-03
53GO:0009734: auxin-activated signaling pathway1.20E-03
54GO:0048829: root cap development1.33E-03
55GO:0043085: positive regulation of catalytic activity1.53E-03
56GO:0009750: response to fructose1.53E-03
57GO:0015706: nitrate transport1.76E-03
58GO:0006518: peptide metabolic process1.80E-03
59GO:0006000: fructose metabolic process1.80E-03
60GO:0006013: mannose metabolic process1.80E-03
61GO:0010160: formation of animal organ boundary1.80E-03
62GO:0045493: xylan catabolic process1.80E-03
63GO:0015840: urea transport1.80E-03
64GO:0071705: nitrogen compound transport1.80E-03
65GO:2001295: malonyl-CoA biosynthetic process1.80E-03
66GO:0006094: gluconeogenesis2.00E-03
67GO:0015995: chlorophyll biosynthetic process2.09E-03
68GO:0010143: cutin biosynthetic process2.26E-03
69GO:0008152: metabolic process2.47E-03
70GO:0010167: response to nitrate2.53E-03
71GO:0034059: response to anoxia2.61E-03
72GO:0009226: nucleotide-sugar biosynthetic process2.61E-03
73GO:0043481: anthocyanin accumulation in tissues in response to UV light2.61E-03
74GO:1901332: negative regulation of lateral root development2.61E-03
75GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.61E-03
76GO:2001141: regulation of RNA biosynthetic process2.61E-03
77GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.61E-03
78GO:1902476: chloride transmembrane transport2.61E-03
79GO:0051513: regulation of monopolar cell growth2.61E-03
80GO:0071484: cellular response to light intensity2.61E-03
81GO:0009723: response to ethylene3.18E-03
82GO:0034599: cellular response to oxidative stress3.41E-03
83GO:0019464: glycine decarboxylation via glycine cleavage system3.52E-03
84GO:0071249: cellular response to nitrate3.52E-03
85GO:0030104: water homeostasis3.52E-03
86GO:0045727: positive regulation of translation3.52E-03
87GO:0015994: chlorophyll metabolic process3.52E-03
88GO:0010023: proanthocyanidin biosynthetic process3.52E-03
89GO:0003333: amino acid transmembrane transport3.80E-03
90GO:2000762: regulation of phenylpropanoid metabolic process4.52E-03
91GO:0045038: protein import into chloroplast thylakoid membrane4.52E-03
92GO:0006461: protein complex assembly4.52E-03
93GO:0045454: cell redox homeostasis4.94E-03
94GO:0060918: auxin transport5.60E-03
95GO:0032973: amino acid export5.60E-03
96GO:0000741: karyogamy5.60E-03
97GO:0006751: glutathione catabolic process5.60E-03
98GO:0000413: protein peptidyl-prolyl isomerization5.80E-03
99GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.75E-03
100GO:0006694: steroid biosynthetic process6.75E-03
101GO:0000302: response to reactive oxygen species7.73E-03
102GO:0043090: amino acid import7.99E-03
103GO:1900056: negative regulation of leaf senescence7.99E-03
104GO:0030497: fatty acid elongation7.99E-03
105GO:0006821: chloride transport7.99E-03
106GO:0009645: response to low light intensity stimulus7.99E-03
107GO:0010196: nonphotochemical quenching7.99E-03
108GO:0050829: defense response to Gram-negative bacterium7.99E-03
109GO:0006402: mRNA catabolic process9.31E-03
110GO:0009642: response to light intensity9.31E-03
111GO:0032508: DNA duplex unwinding9.31E-03
112GO:0010492: maintenance of shoot apical meristem identity9.31E-03
113GO:0009740: gibberellic acid mediated signaling pathway9.51E-03
114GO:0042545: cell wall modification9.88E-03
115GO:0055085: transmembrane transport1.01E-02
116GO:0006002: fructose 6-phosphate metabolic process1.07E-02
117GO:0071482: cellular response to light stimulus1.07E-02
118GO:0009808: lignin metabolic process1.07E-02
119GO:0009733: response to auxin1.18E-02
120GO:0009051: pentose-phosphate shunt, oxidative branch1.22E-02
121GO:0090305: nucleic acid phosphodiester bond hydrolysis1.22E-02
122GO:0080144: amino acid homeostasis1.22E-02
123GO:0048507: meristem development1.22E-02
124GO:0042128: nitrate assimilation1.26E-02
125GO:0010411: xyloglucan metabolic process1.33E-02
126GO:0080167: response to karrikin1.33E-02
127GO:0010205: photoinhibition1.37E-02
128GO:0009299: mRNA transcription1.53E-02
129GO:0006949: syncytium formation1.53E-02
130GO:0010311: lateral root formation1.55E-02
131GO:0000160: phosphorelay signal transduction system1.55E-02
132GO:0000038: very long-chain fatty acid metabolic process1.69E-02
133GO:0019684: photosynthesis, light reaction1.69E-02
134GO:0009089: lysine biosynthetic process via diaminopimelate1.69E-02
135GO:0009698: phenylpropanoid metabolic process1.69E-02
136GO:0006879: cellular iron ion homeostasis1.69E-02
137GO:0006352: DNA-templated transcription, initiation1.69E-02
138GO:0048765: root hair cell differentiation1.69E-02
139GO:0009684: indoleacetic acid biosynthetic process1.69E-02
140GO:0010015: root morphogenesis1.69E-02
141GO:0009409: response to cold1.76E-02
142GO:0006865: amino acid transport1.79E-02
143GO:0007165: signal transduction1.84E-02
144GO:0008361: regulation of cell size1.86E-02
145GO:0006790: sulfur compound metabolic process1.86E-02
146GO:0005983: starch catabolic process1.86E-02
147GO:0016024: CDP-diacylglycerol biosynthetic process1.86E-02
148GO:0009416: response to light stimulus1.93E-02
149GO:0005986: sucrose biosynthetic process2.04E-02
150GO:0006006: glucose metabolic process2.04E-02
151GO:2000028: regulation of photoperiodism, flowering2.04E-02
152GO:0009718: anthocyanin-containing compound biosynthetic process2.04E-02
153GO:0009725: response to hormone2.04E-02
154GO:0009767: photosynthetic electron transport chain2.04E-02
155GO:0010540: basipetal auxin transport2.23E-02
156GO:0005975: carbohydrate metabolic process2.23E-02
157GO:0009739: response to gibberellin2.37E-02
158GO:0005985: sucrose metabolic process2.41E-02
159GO:0010030: positive regulation of seed germination2.41E-02
160GO:0009640: photomorphogenesis2.41E-02
161GO:0046854: phosphatidylinositol phosphorylation2.41E-02
162GO:0009744: response to sucrose2.41E-02
163GO:0010053: root epidermal cell differentiation2.41E-02
164GO:0010025: wax biosynthetic process2.61E-02
165GO:0005992: trehalose biosynthetic process2.81E-02
166GO:0006418: tRNA aminoacylation for protein translation3.01E-02
167GO:0007017: microtubule-based process3.01E-02
168GO:0009664: plant-type cell wall organization3.03E-02
169GO:0061077: chaperone-mediated protein folding3.22E-02
170GO:0048511: rhythmic process3.22E-02
171GO:0009585: red, far-red light phototransduction3.25E-02
172GO:0009826: unidimensional cell growth3.39E-02
173GO:0006412: translation3.42E-02
174GO:0010017: red or far-red light signaling pathway3.44E-02
175GO:0019748: secondary metabolic process3.44E-02
176GO:0009658: chloroplast organization3.56E-02
177GO:0042254: ribosome biogenesis3.64E-02
178GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.66E-02
179GO:0006012: galactose metabolic process3.66E-02
180GO:0048443: stamen development3.88E-02
181GO:0006284: base-excision repair3.88E-02
182GO:0009626: plant-type hypersensitive response4.09E-02
183GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.11E-02
184GO:0042631: cellular response to water deprivation4.34E-02
185GO:0080022: primary root development4.34E-02
186GO:0042335: cuticle development4.34E-02
187GO:0042391: regulation of membrane potential4.34E-02
188GO:0010087: phloem or xylem histogenesis4.34E-02
189GO:0006662: glycerol ether metabolic process4.58E-02
190GO:0010197: polar nucleus fusion4.58E-02
191GO:0009624: response to nematode4.61E-02
192GO:0007018: microtubule-based movement4.82E-02
193GO:0042752: regulation of circadian rhythm4.82E-02
RankGO TermAdjusted P value
1GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
2GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
5GO:0043864: indoleacetamide hydrolase activity0.00E+00
6GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
7GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
8GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0050614: delta24-sterol reductase activity0.00E+00
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.28E-09
13GO:0005528: FK506 binding1.57E-08
14GO:0019843: rRNA binding1.25E-06
15GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.15E-05
16GO:0015250: water channel activity2.10E-05
17GO:0010328: auxin influx transmembrane transporter activity1.44E-04
18GO:0016168: chlorophyll binding2.61E-04
19GO:0031409: pigment binding2.88E-04
20GO:0004130: cytochrome-c peroxidase activity3.11E-04
21GO:0046906: tetrapyrrole binding5.12E-04
22GO:0015200: methylammonium transmembrane transporter activity5.12E-04
23GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity5.12E-04
24GO:0009671: nitrate:proton symporter activity5.12E-04
25GO:0005221: intracellular cyclic nucleotide activated cation channel activity5.12E-04
26GO:0000170: sphingosine hydroxylase activity5.12E-04
27GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.10E-03
28GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.10E-03
29GO:0042284: sphingolipid delta-4 desaturase activity1.10E-03
30GO:0008967: phosphoglycolate phosphatase activity1.10E-03
31GO:0047746: chlorophyllase activity1.10E-03
32GO:0016868: intramolecular transferase activity, phosphotransferases1.10E-03
33GO:0003839: gamma-glutamylcyclotransferase activity1.10E-03
34GO:0005094: Rho GDP-dissociation inhibitor activity1.10E-03
35GO:0043425: bHLH transcription factor binding1.10E-03
36GO:0004047: aminomethyltransferase activity1.10E-03
37GO:0047274: galactinol-sucrose galactosyltransferase activity1.80E-03
38GO:0050734: hydroxycinnamoyltransferase activity1.80E-03
39GO:0002161: aminoacyl-tRNA editing activity1.80E-03
40GO:0004075: biotin carboxylase activity1.80E-03
41GO:0004565: beta-galactosidase activity2.00E-03
42GO:0005096: GTPase activator activity2.54E-03
43GO:0004375: glycine dehydrogenase (decarboxylating) activity2.61E-03
44GO:0016851: magnesium chelatase activity2.61E-03
45GO:0003735: structural constituent of ribosome2.71E-03
46GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.52E-03
47GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.52E-03
48GO:0016987: sigma factor activity3.52E-03
49GO:0009044: xylan 1,4-beta-xylosidase activity3.52E-03
50GO:0005253: anion channel activity3.52E-03
51GO:0046556: alpha-L-arabinofuranosidase activity3.52E-03
52GO:0015204: urea transmembrane transporter activity3.52E-03
53GO:0001053: plastid sigma factor activity3.52E-03
54GO:0010011: auxin binding3.52E-03
55GO:0004345: glucose-6-phosphate dehydrogenase activity3.52E-03
56GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.52E-03
57GO:0004185: serine-type carboxypeptidase activity4.46E-03
58GO:0009922: fatty acid elongase activity4.52E-03
59GO:0004040: amidase activity4.52E-03
60GO:0003989: acetyl-CoA carboxylase activity4.52E-03
61GO:0008725: DNA-3-methyladenine glycosylase activity4.52E-03
62GO:0030570: pectate lyase activity4.54E-03
63GO:0051537: 2 iron, 2 sulfur cluster binding4.93E-03
64GO:0003727: single-stranded RNA binding4.94E-03
65GO:0015293: symporter activity5.18E-03
66GO:0004332: fructose-bisphosphate aldolase activity5.60E-03
67GO:0016688: L-ascorbate peroxidase activity5.60E-03
68GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.60E-03
69GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.60E-03
70GO:0008519: ammonium transmembrane transporter activity5.60E-03
71GO:0005247: voltage-gated chloride channel activity5.60E-03
72GO:0004017: adenylate kinase activity6.75E-03
73GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.75E-03
74GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.75E-03
75GO:0004602: glutathione peroxidase activity6.75E-03
76GO:0005261: cation channel activity6.75E-03
77GO:0004559: alpha-mannosidase activity6.75E-03
78GO:0005242: inward rectifier potassium channel activity6.75E-03
79GO:0051920: peroxiredoxin activity6.75E-03
80GO:0015171: amino acid transmembrane transporter activity7.45E-03
81GO:0045330: aspartyl esterase activity7.45E-03
82GO:0019899: enzyme binding7.99E-03
83GO:0009881: photoreceptor activity7.99E-03
84GO:0004034: aldose 1-epimerase activity9.31E-03
85GO:0004033: aldo-keto reductase (NADP) activity9.31E-03
86GO:0004564: beta-fructofuranosidase activity9.31E-03
87GO:0016209: antioxidant activity9.31E-03
88GO:0016791: phosphatase activity9.39E-03
89GO:0030599: pectinesterase activity9.51E-03
90GO:0004575: sucrose alpha-glucosidase activity1.37E-02
91GO:0005381: iron ion transmembrane transporter activity1.37E-02
92GO:0015112: nitrate transmembrane transporter activity1.37E-02
93GO:0016829: lyase activity1.51E-02
94GO:0008047: enzyme activator activity1.53E-02
95GO:0004805: trehalose-phosphatase activity1.53E-02
96GO:0004252: serine-type endopeptidase activity1.56E-02
97GO:0008378: galactosyltransferase activity1.86E-02
98GO:0000049: tRNA binding1.86E-02
99GO:0004871: signal transducer activity1.88E-02
100GO:0003993: acid phosphatase activity1.95E-02
101GO:0004022: alcohol dehydrogenase (NAD) activity2.04E-02
102GO:0010329: auxin efflux transmembrane transporter activity2.04E-02
103GO:0031072: heat shock protein binding2.04E-02
104GO:0000155: phosphorelay sensor kinase activity2.04E-02
105GO:0005262: calcium channel activity2.04E-02
106GO:0008266: poly(U) RNA binding2.23E-02
107GO:0030553: cGMP binding2.41E-02
108GO:0008146: sulfotransferase activity2.41E-02
109GO:0030552: cAMP binding2.41E-02
110GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.61E-02
111GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.61E-02
112GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.61E-02
113GO:0005215: transporter activity2.97E-02
114GO:0005216: ion channel activity3.01E-02
115GO:0015079: potassium ion transmembrane transporter activity3.01E-02
116GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.07E-02
117GO:0030246: carbohydrate binding3.17E-02
118GO:0004176: ATP-dependent peptidase activity3.22E-02
119GO:0004707: MAP kinase activity3.22E-02
120GO:0022891: substrate-specific transmembrane transporter activity3.66E-02
121GO:0003756: protein disulfide isomerase activity3.88E-02
122GO:0046872: metal ion binding3.91E-02
123GO:0047134: protein-disulfide reductase activity4.11E-02
124GO:0004812: aminoacyl-tRNA ligase activity4.11E-02
125GO:0004650: polygalacturonase activity4.22E-02
126GO:0030551: cyclic nucleotide binding4.34E-02
127GO:0016787: hydrolase activity4.45E-02
128GO:0016746: transferase activity, transferring acyl groups4.75E-02
129GO:0016853: isomerase activity4.82E-02
130GO:0050662: coenzyme binding4.82E-02
131GO:0004791: thioredoxin-disulfide reductase activity4.82E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0009507: chloroplast2.22E-34
4GO:0009535: chloroplast thylakoid membrane2.62E-30
5GO:0009534: chloroplast thylakoid1.43E-27
6GO:0009543: chloroplast thylakoid lumen2.34E-23
7GO:0009570: chloroplast stroma5.81E-20
8GO:0009941: chloroplast envelope1.20E-17
9GO:0009579: thylakoid3.76E-13
10GO:0030095: chloroplast photosystem II6.85E-11
11GO:0009523: photosystem II2.72E-07
12GO:0031977: thylakoid lumen5.41E-07
13GO:0009505: plant-type cell wall5.75E-07
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.36E-06
15GO:0009533: chloroplast stromal thylakoid2.00E-05
16GO:0016020: membrane3.90E-05
17GO:0005618: cell wall8.68E-05
18GO:0009654: photosystem II oxygen evolving complex3.79E-04
19GO:0009782: photosystem I antenna complex5.12E-04
20GO:0043674: columella5.12E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]5.12E-04
22GO:0042807: central vacuole5.33E-04
23GO:0019898: extrinsic component of membrane9.75E-04
24GO:0080085: signal recognition particle, chloroplast targeting1.10E-03
25GO:0048046: apoplast1.12E-03
26GO:0010007: magnesium chelatase complex1.80E-03
27GO:0000312: plastid small ribosomal subunit2.26E-03
28GO:0030076: light-harvesting complex2.53E-03
29GO:0005960: glycine cleavage complex2.61E-03
30GO:0009531: secondary cell wall2.61E-03
31GO:0005775: vacuolar lumen2.61E-03
32GO:0010287: plastoglobule2.78E-03
33GO:0042651: thylakoid membrane3.46E-03
34GO:0031969: chloroplast membrane3.60E-03
35GO:0005887: integral component of plasma membrane3.73E-03
36GO:0034707: chloride channel complex5.60E-03
37GO:0009522: photosystem I6.73E-03
38GO:0009986: cell surface7.99E-03
39GO:0005773: vacuole8.32E-03
40GO:0009538: photosystem I reaction center9.31E-03
41GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.07E-02
42GO:0000326: protein storage vacuole1.07E-02
43GO:0008180: COP9 signalosome1.22E-02
44GO:0042644: chloroplast nucleoid1.22E-02
45GO:0045298: tubulin complex1.22E-02
46GO:0031225: anchored component of membrane1.50E-02
47GO:0009506: plasmodesma1.83E-02
48GO:0032040: small-subunit processome1.86E-02
49GO:0000311: plastid large ribosomal subunit1.86E-02
50GO:0009508: plastid chromosome2.04E-02
51GO:0009705: plant-type vacuole membrane2.06E-02
52GO:0005774: vacuolar membrane2.65E-02
53GO:0005840: ribosome2.69E-02
54GO:0046658: anchored component of plasma membrane2.93E-02
55GO:0005871: kinesin complex4.11E-02
56GO:0005886: plasma membrane4.32E-02
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Gene type



Gene DE type