Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G22640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042820: vitamin B6 catabolic process0.00E+00
2GO:0042371: vitamin K biosynthetic process0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
5GO:0070125: mitochondrial translational elongation0.00E+00
6GO:0006429: leucyl-tRNA aminoacylation0.00E+00
7GO:0002184: cytoplasmic translational termination0.00E+00
8GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
9GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
10GO:0090071: negative regulation of ribosome biogenesis0.00E+00
11GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
12GO:0006223: uracil salvage0.00E+00
13GO:2000121: regulation of removal of superoxide radicals0.00E+00
14GO:0016553: base conversion or substitution editing0.00E+00
15GO:0042407: cristae formation0.00E+00
16GO:0042821: pyridoxal biosynthetic process0.00E+00
17GO:0060416: response to growth hormone0.00E+00
18GO:0006412: translation3.63E-20
19GO:0032544: plastid translation2.25E-18
20GO:0015995: chlorophyll biosynthetic process3.79E-16
21GO:0009658: chloroplast organization2.68E-11
22GO:0042254: ribosome biogenesis3.01E-11
23GO:0006782: protoporphyrinogen IX biosynthetic process3.48E-10
24GO:0015979: photosynthesis4.05E-08
25GO:0009735: response to cytokinin1.99E-07
26GO:0006783: heme biosynthetic process8.86E-07
27GO:0006779: porphyrin-containing compound biosynthetic process1.35E-06
28GO:0009793: embryo development ending in seed dormancy1.37E-06
29GO:0032502: developmental process6.05E-06
30GO:0010275: NAD(P)H dehydrogenase complex assembly8.98E-06
31GO:1902326: positive regulation of chlorophyll biosynthetic process8.98E-06
32GO:1901259: chloroplast rRNA processing9.21E-06
33GO:0010027: thylakoid membrane organization1.32E-05
34GO:0042255: ribosome assembly2.17E-05
35GO:0009773: photosynthetic electron transport in photosystem I8.96E-05
36GO:0032543: mitochondrial translation1.80E-04
37GO:0010236: plastoquinone biosynthetic process1.80E-04
38GO:0045038: protein import into chloroplast thylakoid membrane1.80E-04
39GO:0010190: cytochrome b6f complex assembly2.55E-04
40GO:0006418: tRNA aminoacylation for protein translation2.94E-04
41GO:0042372: phylloquinone biosynthetic process3.43E-04
42GO:0009772: photosynthetic electron transport in photosystem II4.42E-04
43GO:0006821: chloride transport4.42E-04
44GO:0043489: RNA stabilization4.51E-04
45GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process4.51E-04
46GO:1904966: positive regulation of vitamin E biosynthetic process4.51E-04
47GO:0006426: glycyl-tRNA aminoacylation4.51E-04
48GO:1904964: positive regulation of phytol biosynthetic process4.51E-04
49GO:0006436: tryptophanyl-tRNA aminoacylation4.51E-04
50GO:1902458: positive regulation of stomatal opening4.51E-04
51GO:0034337: RNA folding4.51E-04
52GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.51E-04
53GO:0006434: seryl-tRNA aminoacylation4.51E-04
54GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.51E-04
55GO:0009443: pyridoxal 5'-phosphate salvage4.51E-04
56GO:0006438: valyl-tRNA aminoacylation4.51E-04
57GO:0006353: DNA-templated transcription, termination5.51E-04
58GO:0008033: tRNA processing5.82E-04
59GO:0071482: cellular response to light stimulus6.72E-04
60GO:0042742: defense response to bacterium7.06E-04
61GO:0045454: cell redox homeostasis9.15E-04
62GO:0034755: iron ion transmembrane transport9.73E-04
63GO:0006423: cysteinyl-tRNA aminoacylation9.73E-04
64GO:1904143: positive regulation of carotenoid biosynthetic process9.73E-04
65GO:0080148: negative regulation of response to water deprivation9.73E-04
66GO:0008616: queuosine biosynthetic process9.73E-04
67GO:1903426: regulation of reactive oxygen species biosynthetic process9.73E-04
68GO:0043039: tRNA aminoacylation9.73E-04
69GO:1900871: chloroplast mRNA modification9.73E-04
70GO:0006352: DNA-templated transcription, initiation1.27E-03
71GO:0019684: photosynthesis, light reaction1.27E-03
72GO:0043085: positive regulation of catalytic activity1.27E-03
73GO:0006518: peptide metabolic process1.58E-03
74GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.58E-03
75GO:0005977: glycogen metabolic process1.58E-03
76GO:0006011: UDP-glucose metabolic process1.58E-03
77GO:0006954: inflammatory response1.58E-03
78GO:0090391: granum assembly1.58E-03
79GO:0010581: regulation of starch biosynthetic process1.58E-03
80GO:0090351: seedling development2.09E-03
81GO:0006165: nucleoside diphosphate phosphorylation2.29E-03
82GO:0006228: UTP biosynthetic process2.29E-03
83GO:0016556: mRNA modification2.29E-03
84GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.29E-03
85GO:2001141: regulation of RNA biosynthetic process2.29E-03
86GO:1902476: chloride transmembrane transport2.29E-03
87GO:0051085: chaperone mediated protein folding requiring cofactor2.29E-03
88GO:0010239: chloroplast mRNA processing2.29E-03
89GO:0006241: CTP biosynthetic process2.29E-03
90GO:0006424: glutamyl-tRNA aminoacylation2.29E-03
91GO:0006636: unsaturated fatty acid biosynthetic process2.33E-03
92GO:0019344: cysteine biosynthetic process2.58E-03
93GO:0009790: embryo development2.85E-03
94GO:0044206: UMP salvage3.08E-03
95GO:0006749: glutathione metabolic process3.08E-03
96GO:0071483: cellular response to blue light3.08E-03
97GO:0006808: regulation of nitrogen utilization3.08E-03
98GO:0006183: GTP biosynthetic process3.08E-03
99GO:0006730: one-carbon metabolic process3.44E-03
100GO:0007005: mitochondrion organization3.44E-03
101GO:0016120: carotene biosynthetic process3.95E-03
102GO:0043097: pyrimidine nucleoside salvage3.95E-03
103GO:0016123: xanthophyll biosynthetic process3.95E-03
104GO:0009247: glycolipid biosynthetic process3.95E-03
105GO:0034052: positive regulation of plant-type hypersensitive response3.95E-03
106GO:0009306: protein secretion4.08E-03
107GO:0009409: response to cold4.31E-03
108GO:0000413: protein peptidyl-prolyl isomerization4.78E-03
109GO:0008380: RNA splicing4.82E-03
110GO:0006206: pyrimidine nucleobase metabolic process4.89E-03
111GO:0032973: amino acid export4.89E-03
112GO:0010942: positive regulation of cell death4.89E-03
113GO:0042549: photosystem II stabilization4.89E-03
114GO:0006655: phosphatidylglycerol biosynthetic process4.89E-03
115GO:0006364: rRNA processing5.11E-03
116GO:0009741: response to brassinosteroid5.15E-03
117GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.90E-03
118GO:0017148: negative regulation of translation5.90E-03
119GO:0009854: oxidative photosynthetic carbon pathway5.90E-03
120GO:0010019: chloroplast-nucleus signaling pathway5.90E-03
121GO:0010555: response to mannitol5.90E-03
122GO:0009955: adaxial/abaxial pattern specification5.90E-03
123GO:0042026: protein refolding5.90E-03
124GO:0006401: RNA catabolic process6.98E-03
125GO:0045995: regulation of embryonic development6.98E-03
126GO:0009395: phospholipid catabolic process6.98E-03
127GO:0043090: amino acid import6.98E-03
128GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.98E-03
129GO:0043068: positive regulation of programmed cell death8.12E-03
130GO:0006605: protein targeting8.12E-03
131GO:0019375: galactolipid biosynthetic process8.12E-03
132GO:0009704: de-etiolation8.12E-03
133GO:2000070: regulation of response to water deprivation8.12E-03
134GO:0052543: callose deposition in cell wall8.12E-03
135GO:0048564: photosystem I assembly8.12E-03
136GO:0006402: mRNA catabolic process8.12E-03
137GO:0009642: response to light intensity8.12E-03
138GO:0009657: plastid organization9.33E-03
139GO:0017004: cytochrome complex assembly9.33E-03
140GO:0022900: electron transport chain9.33E-03
141GO:0019430: removal of superoxide radicals9.33E-03
142GO:0009821: alkaloid biosynthetic process1.06E-02
143GO:0010206: photosystem II repair1.06E-02
144GO:0080144: amino acid homeostasis1.06E-02
145GO:0031425: chloroplast RNA processing1.19E-02
146GO:0010205: photoinhibition1.19E-02
147GO:0043067: regulation of programmed cell death1.19E-02
148GO:0010380: regulation of chlorophyll biosynthetic process1.19E-02
149GO:0048481: plant ovule development1.21E-02
150GO:0006535: cysteine biosynthetic process from serine1.33E-02
151GO:0045036: protein targeting to chloroplast1.33E-02
152GO:0006415: translational termination1.47E-02
153GO:0006879: cellular iron ion homeostasis1.47E-02
154GO:0018119: peptidyl-cysteine S-nitrosylation1.47E-02
155GO:0009089: lysine biosynthetic process via diaminopimelate1.47E-02
156GO:0009073: aromatic amino acid family biosynthetic process1.47E-02
157GO:0009853: photorespiration1.54E-02
158GO:0034599: cellular response to oxidative stress1.61E-02
159GO:0016024: CDP-diacylglycerol biosynthetic process1.62E-02
160GO:0015706: nitrate transport1.62E-02
161GO:0009451: RNA modification1.66E-02
162GO:0010628: positive regulation of gene expression1.78E-02
163GO:0009691: cytokinin biosynthetic process1.78E-02
164GO:0009767: photosynthetic electron transport chain1.78E-02
165GO:0010207: photosystem II assembly1.94E-02
166GO:0010167: response to nitrate2.10E-02
167GO:0006457: protein folding2.15E-02
168GO:0009116: nucleoside metabolic process2.44E-02
169GO:0000027: ribosomal large subunit assembly2.44E-02
170GO:0019915: lipid storage2.81E-02
171GO:0061077: chaperone-mediated protein folding2.81E-02
172GO:0031408: oxylipin biosynthetic process2.81E-02
173GO:0009814: defense response, incompatible interaction2.99E-02
174GO:0016226: iron-sulfur cluster assembly2.99E-02
175GO:0009411: response to UV3.18E-02
176GO:0016117: carotenoid biosynthetic process3.58E-02
177GO:0006662: glycerol ether metabolic process3.99E-02
178GO:0010197: polar nucleus fusion3.99E-02
179GO:0009742: brassinosteroid mediated signaling pathway4.04E-02
180GO:0015986: ATP synthesis coupled proton transport4.20E-02
181GO:0009646: response to absence of light4.20E-02
182GO:0000302: response to reactive oxygen species4.63E-02
183GO:0002229: defense response to oomycetes4.63E-02
184GO:0055114: oxidation-reduction process4.76E-02
RankGO TermAdjusted P value
1GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
2GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
3GO:0004418: hydroxymethylbilane synthase activity0.00E+00
4GO:0004823: leucine-tRNA ligase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
7GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
8GO:0005048: signal sequence binding0.00E+00
9GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
12GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
13GO:0008887: glycerate kinase activity0.00E+00
14GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
15GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
16GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
17GO:0019843: rRNA binding3.09E-38
18GO:0003735: structural constituent of ribosome1.43E-24
19GO:0016851: magnesium chelatase activity4.41E-07
20GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.98E-06
21GO:0043023: ribosomal large subunit binding6.67E-05
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.10E-04
23GO:0001053: plastid sigma factor activity1.17E-04
24GO:0016987: sigma factor activity1.17E-04
25GO:0005247: voltage-gated chloride channel activity2.55E-04
26GO:0003723: RNA binding2.90E-04
27GO:0051920: peroxiredoxin activity3.43E-04
28GO:0009671: nitrate:proton symporter activity4.51E-04
29GO:0052381: tRNA dimethylallyltransferase activity4.51E-04
30GO:0004832: valine-tRNA ligase activity4.51E-04
31GO:0004830: tryptophan-tRNA ligase activity4.51E-04
32GO:0004820: glycine-tRNA ligase activity4.51E-04
33GO:0004654: polyribonucleotide nucleotidyltransferase activity4.51E-04
34GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.51E-04
35GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.51E-04
36GO:0004828: serine-tRNA ligase activity4.51E-04
37GO:0004655: porphobilinogen synthase activity4.51E-04
38GO:0009374: biotin binding4.51E-04
39GO:0003727: single-stranded RNA binding4.74E-04
40GO:0004812: aminoacyl-tRNA ligase activity5.26E-04
41GO:0004033: aldo-keto reductase (NADP) activity5.51E-04
42GO:0016209: antioxidant activity5.51E-04
43GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.72E-04
44GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.73E-04
45GO:0042389: omega-3 fatty acid desaturase activity9.73E-04
46GO:0009977: proton motive force dependent protein transmembrane transporter activity9.73E-04
47GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity9.73E-04
48GO:0004817: cysteine-tRNA ligase activity9.73E-04
49GO:0008479: queuine tRNA-ribosyltransferase activity9.73E-04
50GO:0016630: protochlorophyllide reductase activity9.73E-04
51GO:0003690: double-stranded DNA binding9.83E-04
52GO:0008047: enzyme activator activity1.10E-03
53GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.58E-03
54GO:0070402: NADPH binding1.58E-03
55GO:0017150: tRNA dihydrouridine synthase activity1.58E-03
56GO:0002161: aminoacyl-tRNA editing activity1.58E-03
57GO:0004148: dihydrolipoyl dehydrogenase activity1.58E-03
58GO:0031072: heat shock protein binding1.65E-03
59GO:0008266: poly(U) RNA binding1.86E-03
60GO:0003729: mRNA binding1.97E-03
61GO:0004222: metalloendopeptidase activity2.11E-03
62GO:0016149: translation release factor activity, codon specific2.29E-03
63GO:0004550: nucleoside diphosphate kinase activity2.29E-03
64GO:0008097: 5S rRNA binding2.29E-03
65GO:0035250: UDP-galactosyltransferase activity2.29E-03
66GO:0043495: protein anchor3.08E-03
67GO:0005253: anion channel activity3.08E-03
68GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.08E-03
69GO:0004659: prenyltransferase activity3.08E-03
70GO:0004845: uracil phosphoribosyltransferase activity3.08E-03
71GO:0051537: 2 iron, 2 sulfur cluster binding3.86E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor3.95E-03
73GO:0004040: amidase activity3.95E-03
74GO:0003989: acetyl-CoA carboxylase activity3.95E-03
75GO:0003959: NADPH dehydrogenase activity3.95E-03
76GO:0030414: peptidase inhibitor activity3.95E-03
77GO:0016208: AMP binding4.89E-03
78GO:0004130: cytochrome-c peroxidase activity4.89E-03
79GO:0004791: thioredoxin-disulfide reductase activity5.54E-03
80GO:0004124: cysteine synthase activity5.90E-03
81GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.90E-03
82GO:0004849: uridine kinase activity5.90E-03
83GO:0019899: enzyme binding6.98E-03
84GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.26E-03
85GO:0051082: unfolded protein binding8.02E-03
86GO:0008312: 7S RNA binding8.12E-03
87GO:0008237: metallopeptidase activity8.22E-03
88GO:0003747: translation release factor activity1.06E-02
89GO:0016844: strictosidine synthase activity1.19E-02
90GO:0015112: nitrate transmembrane transporter activity1.19E-02
91GO:0005381: iron ion transmembrane transporter activity1.19E-02
92GO:0044183: protein binding involved in protein folding1.47E-02
93GO:0000175: 3'-5'-exoribonuclease activity1.78E-02
94GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.94E-02
95GO:0009055: electron carrier activity1.99E-02
96GO:0051536: iron-sulfur cluster binding2.44E-02
97GO:0005528: FK506 binding2.44E-02
98GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.68E-02
99GO:0004601: peroxidase activity2.80E-02
100GO:0004176: ATP-dependent peptidase activity2.81E-02
101GO:0016788: hydrolase activity, acting on ester bonds2.86E-02
102GO:0016491: oxidoreductase activity2.86E-02
103GO:0022891: substrate-specific transmembrane transporter activity3.18E-02
104GO:0005525: GTP binding3.21E-02
105GO:0003756: protein disulfide isomerase activity3.38E-02
106GO:0016887: ATPase activity3.42E-02
107GO:0047134: protein-disulfide reductase activity3.58E-02
108GO:0015035: protein disulfide oxidoreductase activity3.92E-02
109GO:0005509: calcium ion binding3.95E-02
110GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.99E-02
111GO:0008080: N-acetyltransferase activity3.99E-02
112GO:0010181: FMN binding4.20E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009507: chloroplast6.38E-114
4GO:0009570: chloroplast stroma2.75E-77
5GO:0009941: chloroplast envelope9.16E-59
6GO:0009535: chloroplast thylakoid membrane5.79E-32
7GO:0009579: thylakoid1.54E-27
8GO:0005840: ribosome9.34E-23
9GO:0009543: chloroplast thylakoid lumen7.64E-18
10GO:0009534: chloroplast thylakoid1.12E-11
11GO:0031977: thylakoid lumen1.49E-11
12GO:0009654: photosystem II oxygen evolving complex1.21E-08
13GO:0009536: plastid2.06E-08
14GO:0000311: plastid large ribosomal subunit7.39E-08
15GO:0019898: extrinsic component of membrane4.24E-06
16GO:0009295: nucleoid9.83E-06
17GO:0031969: chloroplast membrane2.17E-05
18GO:0010007: magnesium chelatase complex3.09E-05
19GO:0015934: large ribosomal subunit3.59E-05
20GO:0009508: plastid chromosome1.34E-04
21GO:0000312: plastid small ribosomal subunit1.61E-04
22GO:0034707: chloride channel complex2.55E-04
23GO:0009344: nitrite reductase complex [NAD(P)H]4.51E-04
24GO:0009547: plastid ribosome4.51E-04
25GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.05E-04
26GO:0042170: plastid membrane9.73E-04
27GO:0080085: signal recognition particle, chloroplast targeting9.73E-04
28GO:0009509: chromoplast1.58E-03
29GO:0009317: acetyl-CoA carboxylase complex1.58E-03
30GO:0033281: TAT protein transport complex1.58E-03
31GO:0009706: chloroplast inner membrane1.59E-03
32GO:0030095: chloroplast photosystem II1.86E-03
33GO:0042646: plastid nucleoid2.29E-03
34GO:0042651: thylakoid membrane2.85E-03
35GO:0015935: small ribosomal subunit3.14E-03
36GO:0022626: cytosolic ribosome3.96E-03
37GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.89E-03
38GO:0005762: mitochondrial large ribosomal subunit5.90E-03
39GO:0016363: nuclear matrix5.90E-03
40GO:0009533: chloroplast stromal thylakoid6.98E-03
41GO:0010319: stromule8.22E-03
42GO:0009539: photosystem II reaction center9.33E-03
43GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.33E-03
44GO:0005763: mitochondrial small ribosomal subunit1.06E-02
45GO:0032040: small-subunit processome1.62E-02
46GO:0016020: membrane1.77E-02
47GO:0019013: viral nucleocapsid1.78E-02
48GO:0022627: cytosolic small ribosomal subunit2.30E-02
49GO:0022625: cytosolic large ribosomal subunit3.89E-02
50GO:0009523: photosystem II4.41E-02
51GO:0010287: plastoglobule4.51E-02
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Gene type



Gene DE type