co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G20060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0006223: uracil salvage	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
7	GO:0097164: ammonium ion metabolic process	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:1905499: trichome papilla formation	0.00E+00
10	GO:0006399: tRNA metabolic process	0.00E+00
11	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
12	GO:0010027: thylakoid membrane organization	8.32E-11
13	GO:0032544: plastid translation	1.48E-09
14	GO:0090391: granum assembly	3.65E-08
15	GO:0009658: chloroplast organization	1.63E-06
16	GO:0015995: chlorophyll biosynthetic process	5.75E-06
17	GO:0006412: translation	8.20E-06
18	GO:0042254: ribosome biogenesis	1.86E-05
19	GO:0042335: cuticle development	1.89E-05
20	GO:0006782: protoporphyrinogen IX biosynthetic process	3.27E-05
21	GO:0051085: chaperone mediated protein folding requiring cofactor	3.71E-05
22	GO:0010207: photosystem II assembly	7.75E-05
23	GO:0042372: phylloquinone biosynthetic process	2.05E-04
24	GO:1901259: chloroplast rRNA processing	2.05E-04
25	GO:0010196: nonphotochemical quenching	2.67E-04
26	GO:0009443: pyridoxal 5'-phosphate salvage	3.22E-04
27	GO:0006438: valyl-tRNA aminoacylation	3.22E-04
28	GO:1904966: positive regulation of vitamin E biosynthetic process	3.22E-04
29	GO:1904964: positive regulation of phytol biosynthetic process	3.22E-04
30	GO:0042371: vitamin K biosynthetic process	3.22E-04
31	GO:0043686: co-translational protein modification	3.22E-04
32	GO:0043007: maintenance of rDNA	3.22E-04
33	GO:1902458: positive regulation of stomatal opening	3.22E-04
34	GO:0034337: RNA folding	3.22E-04
35	GO:0032502: developmental process	4.84E-04
36	GO:0006783: heme biosynthetic process	4.95E-04
37	GO:2000123: positive regulation of stomatal complex development	7.02E-04
38	GO:0043039: tRNA aminoacylation	7.02E-04
39	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.02E-04
40	GO:0070981: L-asparagine biosynthetic process	7.02E-04
41	GO:0018026: peptidyl-lysine monomethylation	7.02E-04
42	GO:0080183: response to photooxidative stress	7.02E-04
43	GO:0006529: asparagine biosynthetic process	7.02E-04
44	GO:0008616: queuosine biosynthetic process	7.02E-04
45	GO:0006729: tetrahydrobiopterin biosynthetic process	7.02E-04
46	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.02E-04
47	GO:0006568: tryptophan metabolic process	7.02E-04
48	GO:0009627: systemic acquired resistance	8.18E-04
49	GO:0045037: protein import into chloroplast stroma	8.99E-04
50	GO:0051604: protein maturation	1.14E-03
51	GO:0006696: ergosterol biosynthetic process	1.14E-03
52	GO:0006760: folic acid-containing compound metabolic process	1.14E-03
53	GO:0015979: photosynthesis	1.32E-03
54	GO:0009735: response to cytokinin	1.32E-03
55	GO:0045454: cell redox homeostasis	1.44E-03
56	GO:0006633: fatty acid biosynthetic process	1.47E-03
57	GO:0019344: cysteine biosynthetic process	1.57E-03
58	GO:0006241: CTP biosynthetic process	1.63E-03
59	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.63E-03
60	GO:0006165: nucleoside diphosphate phosphorylation	1.63E-03
61	GO:0006228: UTP biosynthetic process	1.63E-03
62	GO:0046739: transport of virus in multicellular host	1.63E-03
63	GO:0050482: arachidonic acid secretion	1.63E-03
64	GO:0006986: response to unfolded protein	1.63E-03
65	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.63E-03
66	GO:2001141: regulation of RNA biosynthetic process	1.63E-03
67	GO:0006418: tRNA aminoacylation for protein translation	1.74E-03
68	GO:0009765: photosynthesis, light harvesting	2.19E-03
69	GO:0006183: GTP biosynthetic process	2.19E-03
70	GO:2000038: regulation of stomatal complex development	2.19E-03
71	GO:0046656: folic acid biosynthetic process	2.19E-03
72	GO:0006021: inositol biosynthetic process	2.19E-03
73	GO:0044206: UMP salvage	2.19E-03
74	GO:0015976: carbon utilization	2.19E-03
75	GO:0042538: hyperosmotic salinity response	2.46E-03
76	GO:0016123: xanthophyll biosynthetic process	2.80E-03
77	GO:0006665: sphingolipid metabolic process	2.80E-03
78	GO:0010375: stomatal complex patterning	2.80E-03
79	GO:0016120: carotene biosynthetic process	2.80E-03
80	GO:0043097: pyrimidine nucleoside salvage	2.80E-03
81	GO:0010236: plastoquinone biosynthetic process	2.80E-03
82	GO:0045038: protein import into chloroplast thylakoid membrane	2.80E-03
83	GO:0031365: N-terminal protein amino acid modification	2.80E-03
84	GO:0000413: protein peptidyl-prolyl isomerization	2.89E-03
85	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.46E-03
86	GO:0006655: phosphatidylglycerol biosynthetic process	3.46E-03
87	GO:0042793: transcription from plastid promoter	3.46E-03
88	GO:0010190: cytochrome b6f complex assembly	3.46E-03
89	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.46E-03
90	GO:0006206: pyrimidine nucleobase metabolic process	3.46E-03
91	GO:0046855: inositol phosphate dephosphorylation	3.46E-03
92	GO:0009972: cytidine deamination	3.46E-03
93	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.17E-03
94	GO:0009955: adaxial/abaxial pattern specification	4.17E-03
95	GO:0042026: protein refolding	4.17E-03
96	GO:0017148: negative regulation of translation	4.17E-03
97	GO:0048280: vesicle fusion with Golgi apparatus	4.17E-03
98	GO:0046654: tetrahydrofolate biosynthetic process	4.17E-03
99	GO:0009554: megasporogenesis	4.17E-03
100	GO:0010019: chloroplast-nucleus signaling pathway	4.17E-03
101	GO:0010555: response to mannitol	4.17E-03
102	GO:0009772: photosynthetic electron transport in photosystem II	4.92E-03
103	GO:0006400: tRNA modification	4.92E-03
104	GO:0007267: cell-cell signaling	4.95E-03
105	GO:0006644: phospholipid metabolic process	5.71E-03
106	GO:0048564: photosystem I assembly	5.71E-03
107	GO:0009642: response to light intensity	5.71E-03
108	GO:0042255: ribosome assembly	5.71E-03
109	GO:0009690: cytokinin metabolic process	5.71E-03
110	GO:0006605: protein targeting	5.71E-03
111	GO:0006353: DNA-templated transcription, termination	5.71E-03
112	GO:0006875: cellular metal ion homeostasis	5.71E-03
113	GO:2000070: regulation of response to water deprivation	5.71E-03
114	GO:0071482: cellular response to light stimulus	6.55E-03
115	GO:0015996: chlorophyll catabolic process	6.55E-03
116	GO:0007186: G-protein coupled receptor signaling pathway	6.55E-03
117	GO:0010497: plasmodesmata-mediated intercellular transport	6.55E-03
118	GO:0009657: plastid organization	6.55E-03
119	GO:0017004: cytochrome complex assembly	6.55E-03
120	GO:0009245: lipid A biosynthetic process	7.42E-03
121	GO:0006779: porphyrin-containing compound biosynthetic process	8.34E-03
122	GO:0042761: very long-chain fatty acid biosynthetic process	8.34E-03
123	GO:0006457: protein folding	8.96E-03
124	GO:0006896: Golgi to vacuole transport	9.30E-03
125	GO:0006535: cysteine biosynthetic process from serine	9.30E-03
126	GO:0045036: protein targeting to chloroplast	9.30E-03
127	GO:0000038: very long-chain fatty acid metabolic process	1.03E-02
128	GO:0009073: aromatic amino acid family biosynthetic process	1.03E-02
129	GO:0043085: positive regulation of catalytic activity	1.03E-02
130	GO:0006415: translational termination	1.03E-02
131	GO:0006352: DNA-templated transcription, initiation	1.03E-02
132	GO:0006790: sulfur compound metabolic process	1.13E-02
133	GO:0016024: CDP-diacylglycerol biosynthetic process	1.13E-02
134	GO:0006541: glutamine metabolic process	1.35E-02
135	GO:0010167: response to nitrate	1.46E-02
136	GO:0019853: L-ascorbic acid biosynthetic process	1.46E-02
137	GO:0046854: phosphatidylinositol phosphorylation	1.46E-02
138	GO:0010025: wax biosynthetic process	1.58E-02
139	GO:0009116: nucleoside metabolic process	1.70E-02
140	GO:0007017: microtubule-based process	1.83E-02
141	GO:0080167: response to karrikin	1.94E-02
142	GO:0061077: chaperone-mediated protein folding	1.95E-02
143	GO:0007005: mitochondrion organization	2.08E-02
144	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.22E-02
145	GO:0009411: response to UV	2.22E-02
146	GO:0010091: trichome branching	2.35E-02
147	GO:0019722: calcium-mediated signaling	2.35E-02
148	GO:0009306: protein secretion	2.35E-02
149	GO:0016117: carotenoid biosynthetic process	2.49E-02
150	GO:0042147: retrograde transport, endosome to Golgi	2.49E-02
151	GO:0080022: primary root development	2.63E-02
152	GO:0006662: glycerol ether metabolic process	2.78E-02
153	GO:0010182: sugar mediated signaling pathway	2.78E-02
154	GO:0009646: response to absence of light	2.92E-02
155	GO:0006623: protein targeting to vacuole	3.07E-02
156	GO:0008654: phospholipid biosynthetic process	3.07E-02
157	GO:0009409: response to cold	3.22E-02
158	GO:0006891: intra-Golgi vesicle-mediated transport	3.23E-02
159	GO:0009790: embryo development	3.36E-02
160	GO:0010583: response to cyclopentenone	3.38E-02
161	GO:1901657: glycosyl compound metabolic process	3.54E-02
162	GO:0009567: double fertilization forming a zygote and endosperm	3.70E-02
163	GO:0009828: plant-type cell wall loosening	3.70E-02
164	GO:0010286: heat acclimation	3.86E-02
165	GO:0000910: cytokinesis	4.03E-02
166	GO:0042128: nitrate assimilation	4.53E-02
167	GO:0010411: xyloglucan metabolic process	4.71E-02
168	GO:0006888: ER to Golgi vesicle-mediated transport	4.71E-02
169	GO:0016311: dephosphorylation	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
5	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
6	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
7	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
11	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
12	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
13	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
14	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
15	GO:0046408: chlorophyll synthetase activity	0.00E+00
16	GO:0019843: rRNA binding	4.09E-09
17	GO:0003735: structural constituent of ribosome	8.19E-07
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.64E-05
19	GO:0051920: peroxiredoxin activity	2.05E-04
20	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.22E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.22E-04
22	GO:0004560: alpha-L-fucosidase activity	3.22E-04
23	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.22E-04
24	GO:0004831: tyrosine-tRNA ligase activity	3.22E-04
25	GO:0009374: biotin binding	3.22E-04
26	GO:0004071: aspartate-ammonia ligase activity	3.22E-04
27	GO:0042586: peptide deformylase activity	3.22E-04
28	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.22E-04
29	GO:0015088: copper uptake transmembrane transporter activity	3.22E-04
30	GO:0004832: valine-tRNA ligase activity	3.22E-04
31	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.22E-04
32	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.22E-04
33	GO:0016209: antioxidant activity	3.36E-04
34	GO:0102083: 7,8-dihydromonapterin aldolase activity	7.02E-04
35	GO:0052832: inositol monophosphate 3-phosphatase activity	7.02E-04
36	GO:0008479: queuine tRNA-ribosyltransferase activity	7.02E-04
37	GO:0008934: inositol monophosphate 1-phosphatase activity	7.02E-04
38	GO:0052833: inositol monophosphate 4-phosphatase activity	7.02E-04
39	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	7.02E-04
40	GO:0004150: dihydroneopterin aldolase activity	7.02E-04
41	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	7.02E-04
42	GO:0005504: fatty acid binding	1.14E-03
43	GO:0004148: dihydrolipoyl dehydrogenase activity	1.14E-03
44	GO:0004751: ribose-5-phosphate isomerase activity	1.14E-03
45	GO:0070402: NADPH binding	1.14E-03
46	GO:0005528: FK506 binding	1.57E-03
47	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.63E-03
48	GO:0016149: translation release factor activity, codon specific	1.63E-03
49	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.63E-03
50	GO:0004550: nucleoside diphosphate kinase activity	1.63E-03
51	GO:0043023: ribosomal large subunit binding	1.63E-03
52	GO:0008097: 5S rRNA binding	1.63E-03
53	GO:0016987: sigma factor activity	2.19E-03
54	GO:0045430: chalcone isomerase activity	2.19E-03
55	GO:0043495: protein anchor	2.19E-03
56	GO:0004659: prenyltransferase activity	2.19E-03
57	GO:0016279: protein-lysine N-methyltransferase activity	2.19E-03
58	GO:0001053: plastid sigma factor activity	2.19E-03
59	GO:0004845: uracil phosphoribosyltransferase activity	2.19E-03
60	GO:0004812: aminoacyl-tRNA ligase activity	2.68E-03
61	GO:0009922: fatty acid elongase activity	2.80E-03
62	GO:0030414: peptidase inhibitor activity	2.80E-03
63	GO:0004623: phospholipase A2 activity	2.80E-03
64	GO:0004040: amidase activity	2.80E-03
65	GO:0003989: acetyl-CoA carboxylase activity	2.80E-03
66	GO:0004601: peroxidase activity	3.32E-03
67	GO:0004605: phosphatidate cytidylyltransferase activity	3.46E-03
68	GO:0031177: phosphopantetheine binding	3.46E-03
69	GO:0016208: AMP binding	3.46E-03
70	GO:0019901: protein kinase binding	3.60E-03
71	GO:0004124: cysteine synthase activity	4.17E-03
72	GO:0004126: cytidine deaminase activity	4.17E-03
73	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.17E-03
74	GO:0051753: mannan synthase activity	4.17E-03
75	GO:0004849: uridine kinase activity	4.17E-03
76	GO:0000035: acyl binding	4.17E-03
77	GO:0051082: unfolded protein binding	4.21E-03
78	GO:0019899: enzyme binding	4.92E-03
79	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.71E-03
80	GO:0004033: aldo-keto reductase (NADP) activity	5.71E-03
81	GO:0030674: protein binding, bridging	5.71E-03
82	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.27E-03
83	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	7.42E-03
84	GO:0003747: translation release factor activity	7.42E-03
85	GO:0005381: iron ion transmembrane transporter activity	8.34E-03
86	GO:0008047: enzyme activator activity	9.30E-03
87	GO:0008794: arsenate reductase (glutaredoxin) activity	1.03E-02
88	GO:0044183: protein binding involved in protein folding	1.03E-02
89	GO:0051539: 4 iron, 4 sulfur cluster binding	1.05E-02
90	GO:0004089: carbonate dehydratase activity	1.24E-02
91	GO:0031072: heat shock protein binding	1.24E-02
92	GO:0051119: sugar transmembrane transporter activity	1.46E-02
93	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.58E-02
94	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.58E-02
95	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.58E-02
96	GO:0051087: chaperone binding	1.83E-02
97	GO:0004176: ATP-dependent peptidase activity	1.95E-02
98	GO:0004650: polygalacturonase activity	2.10E-02
99	GO:0022891: substrate-specific transmembrane transporter activity	2.22E-02
100	GO:0003727: single-stranded RNA binding	2.35E-02
101	GO:0015035: protein disulfide oxidoreductase activity	2.37E-02
102	GO:0047134: protein-disulfide reductase activity	2.49E-02
103	GO:0042803: protein homodimerization activity	2.58E-02
104	GO:0004791: thioredoxin-disulfide reductase activity	2.92E-02
105	GO:0030170: pyridoxal phosphate binding	3.19E-02
106	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.23E-02
107	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.54E-02
108	GO:0008483: transaminase activity	3.86E-02
109	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.86E-02
110	GO:0008237: metallopeptidase activity	3.86E-02
111	GO:0005200: structural constituent of cytoskeleton	3.86E-02
112	GO:0016168: chlorophyll binding	4.36E-02
113	GO:0102483: scopolin beta-glucosidase activity	4.71E-02
114	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.71E-02
115	GO:0008236: serine-type peptidase activity	4.88E-02
116	GO:0005509: calcium ion binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	5.43E-56
3	GO:0009570: chloroplast stroma	6.10E-37
4	GO:0009941: chloroplast envelope	8.12E-27
5	GO:0009535: chloroplast thylakoid membrane	1.03E-23
6	GO:0009579: thylakoid	1.17E-19
7	GO:0009543: chloroplast thylakoid lumen	6.85E-12
8	GO:0031977: thylakoid lumen	4.59E-11
9	GO:0005840: ribosome	1.83E-10
10	GO:0009534: chloroplast thylakoid	4.80E-10
11	GO:0048046: apoplast	4.75E-06
12	GO:0009654: photosystem II oxygen evolving complex	6.18E-06
13	GO:0009536: plastid	1.56E-05
14	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.22E-04
15	GO:0009923: fatty acid elongase complex	3.22E-04
16	GO:0019898: extrinsic component of membrane	4.06E-04
17	GO:0010319: stromule	6.14E-04
18	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.02E-04
19	GO:0009707: chloroplast outer membrane	9.92E-04
20	GO:0009508: plastid chromosome	1.02E-03
21	GO:0031969: chloroplast membrane	1.05E-03
22	GO:0009528: plastid inner membrane	1.14E-03
23	GO:0009509: chromoplast	1.14E-03
24	GO:0009317: acetyl-CoA carboxylase complex	1.14E-03
25	GO:0009527: plastid outer membrane	2.19E-03
26	GO:0009526: plastid envelope	2.19E-03
27	GO:0031897: Tic complex	2.19E-03
28	GO:0046658: anchored component of plasma membrane	2.61E-03
29	GO:0055035: plastid thylakoid membrane	2.80E-03
30	GO:0031225: anchored component of membrane	3.81E-03
31	GO:0009533: chloroplast stromal thylakoid	4.92E-03
32	GO:0009295: nucleoid	4.95E-03
33	GO:0012507: ER to Golgi transport vesicle membrane	5.71E-03
34	GO:0009539: photosystem II reaction center	6.55E-03
35	GO:0045298: tubulin complex	7.42E-03
36	GO:0005763: mitochondrial small ribosomal subunit	7.42E-03
37	GO:0015934: large ribosomal subunit	8.41E-03
38	GO:0009505: plant-type cell wall	9.89E-03
39	GO:0032040: small-subunit processome	1.13E-02
40	GO:0030095: chloroplast photosystem II	1.35E-02
41	GO:0005618: cell wall	1.60E-02
42	GO:0042651: thylakoid membrane	1.83E-02
43	GO:0022626: cytosolic ribosome	1.85E-02
44	GO:0015935: small ribosomal subunit	1.95E-02
45	GO:0009532: plastid stroma	1.95E-02
46	GO:0031410: cytoplasmic vesicle	2.08E-02
47	GO:0009706: chloroplast inner membrane	2.30E-02
48	GO:0009504: cell plate	3.07E-02
49	GO:0009523: photosystem II	3.07E-02
50	GO:0005778: peroxisomal membrane	3.86E-02