Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G16180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0034337: RNA folding0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:2000121: regulation of removal of superoxide radicals0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
9GO:0015979: photosynthesis3.54E-20
10GO:0015995: chlorophyll biosynthetic process3.00E-13
11GO:0042254: ribosome biogenesis1.36E-10
12GO:0006412: translation6.11E-10
13GO:0032544: plastid translation3.22E-09
14GO:0009773: photosynthetic electron transport in photosystem I2.65E-08
15GO:0009735: response to cytokinin5.95E-08
16GO:0010027: thylakoid membrane organization3.15E-07
17GO:0010207: photosystem II assembly4.28E-06
18GO:0009658: chloroplast organization4.65E-06
19GO:0090391: granum assembly2.36E-05
20GO:0010206: photosystem II repair2.96E-05
21GO:0006782: protoporphyrinogen IX biosynthetic process5.08E-05
22GO:0006546: glycine catabolic process9.11E-05
23GO:0006636: unsaturated fatty acid biosynthetic process1.63E-04
24GO:0018298: protein-chromophore linkage1.87E-04
25GO:0042549: photosystem II stabilization2.03E-04
26GO:0010019: chloroplast-nucleus signaling pathway2.74E-04
27GO:0009409: response to cold2.78E-04
28GO:0010196: nonphotochemical quenching3.54E-04
29GO:0000481: maturation of 5S rRNA3.89E-04
30GO:1904964: positive regulation of phytol biosynthetic process3.89E-04
31GO:0071588: hydrogen peroxide mediated signaling pathway3.89E-04
32GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.89E-04
33GO:0060627: regulation of vesicle-mediated transport3.89E-04
34GO:0043489: RNA stabilization3.89E-04
35GO:1904966: positive regulation of vitamin E biosynthetic process3.89E-04
36GO:0010114: response to red light4.20E-04
37GO:0000413: protein peptidyl-prolyl isomerization4.39E-04
38GO:0055114: oxidation-reduction process4.96E-04
39GO:0006783: heme biosynthetic process6.50E-04
40GO:0010205: photoinhibition7.68E-04
41GO:0009638: phototropism7.68E-04
42GO:0006779: porphyrin-containing compound biosynthetic process7.68E-04
43GO:0030388: fructose 1,6-bisphosphate metabolic process8.44E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process8.44E-04
45GO:0018119: peptidyl-cysteine S-nitrosylation1.03E-03
46GO:0006006: glucose metabolic process1.33E-03
47GO:0006000: fructose metabolic process1.37E-03
48GO:0015714: phosphoenolpyruvate transport1.37E-03
49GO:0006013: mannose metabolic process1.37E-03
50GO:0019253: reductive pentose-phosphate cycle1.50E-03
51GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.83E-03
52GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.97E-03
53GO:2001141: regulation of RNA biosynthetic process1.97E-03
54GO:0051513: regulation of monopolar cell growth1.97E-03
55GO:0071484: cellular response to light intensity1.97E-03
56GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.97E-03
57GO:0010731: protein glutathionylation1.97E-03
58GO:0009768: photosynthesis, light harvesting in photosystem I2.29E-03
59GO:0010037: response to carbon dioxide2.65E-03
60GO:0006542: glutamine biosynthetic process2.65E-03
61GO:0019676: ammonia assimilation cycle2.65E-03
62GO:0015976: carbon utilization2.65E-03
63GO:0019464: glycine decarboxylation via glycine cleavage system2.65E-03
64GO:0045727: positive regulation of translation2.65E-03
65GO:0015994: chlorophyll metabolic process2.65E-03
66GO:2000122: negative regulation of stomatal complex development2.65E-03
67GO:0015713: phosphoglycerate transport2.65E-03
68GO:0006021: inositol biosynthetic process2.65E-03
69GO:0031365: N-terminal protein amino acid modification3.40E-03
70GO:0009247: glycolipid biosynthetic process3.40E-03
71GO:0034052: positive regulation of plant-type hypersensitive response3.40E-03
72GO:0042742: defense response to bacterium3.75E-03
73GO:0042631: cellular response to water deprivation3.83E-03
74GO:0010405: arabinogalactan protein metabolic process4.20E-03
75GO:0032973: amino acid export4.20E-03
76GO:0018258: protein O-linked glycosylation via hydroxyproline4.20E-03
77GO:0046855: inositol phosphate dephosphorylation4.20E-03
78GO:0009854: oxidative photosynthetic carbon pathway5.06E-03
79GO:0010555: response to mannitol5.06E-03
80GO:0042372: phylloquinone biosynthetic process5.06E-03
81GO:1901259: chloroplast rRNA processing5.06E-03
82GO:0000302: response to reactive oxygen species5.10E-03
83GO:0006400: tRNA modification5.98E-03
84GO:0009395: phospholipid catabolic process5.98E-03
85GO:0009772: photosynthetic electron transport in photosystem II5.98E-03
86GO:0043090: amino acid import5.98E-03
87GO:0010098: suspensor development5.98E-03
88GO:0009645: response to low light intensity stimulus5.98E-03
89GO:0050829: defense response to Gram-negative bacterium5.98E-03
90GO:0032508: DNA duplex unwinding6.95E-03
91GO:0048564: photosystem I assembly6.95E-03
92GO:0030091: protein repair6.95E-03
93GO:0009819: drought recovery6.95E-03
94GO:0009642: response to light intensity6.95E-03
95GO:0009850: auxin metabolic process6.95E-03
96GO:0043068: positive regulation of programmed cell death6.95E-03
97GO:0006605: protein targeting6.95E-03
98GO:0019375: galactolipid biosynthetic process6.95E-03
99GO:0017004: cytochrome complex assembly7.98E-03
100GO:0009932: cell tip growth7.98E-03
101GO:0006002: fructose 6-phosphate metabolic process7.98E-03
102GO:0071482: cellular response to light stimulus7.98E-03
103GO:0009657: plastid organization7.98E-03
104GO:0042128: nitrate assimilation8.26E-03
105GO:0009051: pentose-phosphate shunt, oxidative branch9.05E-03
106GO:0080144: amino acid homeostasis9.05E-03
107GO:0009790: embryo development9.80E-03
108GO:0010218: response to far red light1.07E-02
109GO:0007568: aging1.12E-02
110GO:0009631: cold acclimation1.12E-02
111GO:0009870: defense response signaling pathway, resistance gene-dependent1.14E-02
112GO:0045490: pectin catabolic process1.21E-02
113GO:0007623: circadian rhythm1.21E-02
114GO:0009637: response to blue light1.23E-02
115GO:0009451: RNA modification1.25E-02
116GO:0006352: DNA-templated transcription, initiation1.26E-02
117GO:0000272: polysaccharide catabolic process1.26E-02
118GO:0010015: root morphogenesis1.26E-02
119GO:0019684: photosynthesis, light reaction1.26E-02
120GO:0009089: lysine biosynthetic process via diaminopimelate1.26E-02
121GO:0043085: positive regulation of catalytic activity1.26E-02
122GO:0006415: translational termination1.26E-02
123GO:0034599: cellular response to oxidative stress1.28E-02
124GO:0006790: sulfur compound metabolic process1.39E-02
125GO:0006094: gluconeogenesis1.52E-02
126GO:0005986: sucrose biosynthetic process1.52E-02
127GO:0010628: positive regulation of gene expression1.52E-02
128GO:0010143: cutin biosynthetic process1.65E-02
129GO:0010020: chloroplast fission1.65E-02
130GO:0009644: response to high light intensity1.72E-02
131GO:0010030: positive regulation of seed germination1.79E-02
132GO:0046854: phosphatidylinositol phosphorylation1.79E-02
133GO:0010167: response to nitrate1.79E-02
134GO:0019853: L-ascorbic acid biosynthetic process1.79E-02
135GO:0005992: trehalose biosynthetic process2.08E-02
136GO:0019344: cysteine biosynthetic process2.08E-02
137GO:0000027: ribosomal large subunit assembly2.08E-02
138GO:0009585: red, far-red light phototransduction2.14E-02
139GO:0048511: rhythmic process2.39E-02
140GO:0061077: chaperone-mediated protein folding2.39E-02
141GO:0031408: oxylipin biosynthetic process2.39E-02
142GO:0010017: red or far-red light signaling pathway2.55E-02
143GO:0009814: defense response, incompatible interaction2.55E-02
144GO:0016226: iron-sulfur cluster assembly2.55E-02
145GO:0080167: response to karrikin2.77E-02
146GO:0009306: protein secretion2.88E-02
147GO:0006284: base-excision repair2.88E-02
148GO:0019722: calcium-mediated signaling2.88E-02
149GO:0042545: cell wall modification2.96E-02
150GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.05E-02
151GO:0006396: RNA processing3.14E-02
152GO:0042335: cuticle development3.22E-02
153GO:0009958: positive gravitropism3.40E-02
154GO:0045454: cell redox homeostasis3.46E-02
155GO:0015986: ATP synthesis coupled proton transport3.58E-02
156GO:0042752: regulation of circadian rhythm3.58E-02
157GO:0019252: starch biosynthetic process3.76E-02
158GO:0002229: defense response to oomycetes3.95E-02
159GO:0016042: lipid catabolic process4.32E-02
160GO:1901657: glycosyl compound metabolic process4.33E-02
161GO:0042744: hydrogen peroxide catabolic process4.34E-02
162GO:0006457: protein folding4.37E-02
163GO:0007267: cell-cell signaling4.72E-02
164GO:0006633: fatty acid biosynthetic process4.78E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
4GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
8GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
9GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
10GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
11GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
12GO:0019843: rRNA binding3.43E-20
13GO:0003735: structural constituent of ribosome4.81E-13
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.09E-10
15GO:0005528: FK506 binding2.28E-07
16GO:0016851: magnesium chelatase activity2.95E-07
17GO:0016168: chlorophyll binding1.29E-04
18GO:0004130: cytochrome-c peroxidase activity2.03E-04
19GO:0051920: peroxiredoxin activity2.74E-04
20GO:0019899: enzyme binding3.54E-04
21GO:0004328: formamidase activity3.89E-04
22GO:0010347: L-galactose-1-phosphate phosphatase activity3.89E-04
23GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity3.89E-04
24GO:0046906: tetrapyrrole binding3.89E-04
25GO:0015121: phosphoenolpyruvate:phosphate antiporter activity3.89E-04
26GO:0052638: indole-3-butyrate beta-glucosyltransferase activity3.89E-04
27GO:0004853: uroporphyrinogen decarboxylase activity3.89E-04
28GO:0045485: omega-6 fatty acid desaturase activity3.89E-04
29GO:0016209: antioxidant activity4.44E-04
30GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.43E-04
31GO:0008883: glutamyl-tRNA reductase activity8.44E-04
32GO:0047746: chlorophyllase activity8.44E-04
33GO:0042389: omega-3 fatty acid desaturase activity8.44E-04
34GO:0010297: heteropolysaccharide binding8.44E-04
35GO:0004047: aminomethyltransferase activity8.44E-04
36GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity8.44E-04
37GO:0052832: inositol monophosphate 3-phosphatase activity8.44E-04
38GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.44E-04
39GO:0008934: inositol monophosphate 1-phosphatase activity8.44E-04
40GO:0016630: protochlorophyllide reductase activity8.44E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity8.44E-04
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.44E-04
43GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.44E-04
44GO:0008967: phosphoglycolate phosphatase activity8.44E-04
45GO:0016788: hydrolase activity, acting on ester bonds1.22E-03
46GO:0045174: glutathione dehydrogenase (ascorbate) activity1.37E-03
47GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.37E-03
48GO:0010277: chlorophyllide a oxygenase [overall] activity1.37E-03
49GO:0050734: hydroxycinnamoyltransferase activity1.37E-03
50GO:0004148: dihydrolipoyl dehydrogenase activity1.37E-03
51GO:0031409: pigment binding1.87E-03
52GO:0004375: glycine dehydrogenase (decarboxylating) activity1.97E-03
53GO:0035250: UDP-galactosyltransferase activity1.97E-03
54GO:0016149: translation release factor activity, codon specific1.97E-03
55GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.97E-03
56GO:0050661: NADP binding2.25E-03
57GO:0015120: phosphoglycerate transmembrane transporter activity2.65E-03
58GO:0004659: prenyltransferase activity2.65E-03
59GO:0001053: plastid sigma factor activity2.65E-03
60GO:0004345: glucose-6-phosphate dehydrogenase activity2.65E-03
61GO:0016987: sigma factor activity2.65E-03
62GO:1990137: plant seed peroxidase activity2.65E-03
63GO:0043495: protein anchor2.65E-03
64GO:0051537: 2 iron, 2 sulfur cluster binding2.91E-03
65GO:0022891: substrate-specific transmembrane transporter activity3.01E-03
66GO:0005509: calcium ion binding3.14E-03
67GO:0004356: glutamate-ammonia ligase activity3.40E-03
68GO:0008725: DNA-3-methyladenine glycosylase activity3.40E-03
69GO:0003959: NADPH dehydrogenase activity3.40E-03
70GO:0016773: phosphotransferase activity, alcohol group as acceptor3.40E-03
71GO:1990714: hydroxyproline O-galactosyltransferase activity4.20E-03
72GO:0016208: AMP binding4.20E-03
73GO:0042578: phosphoric ester hydrolase activity4.20E-03
74GO:0016688: L-ascorbate peroxidase activity4.20E-03
75GO:0004559: alpha-mannosidase activity5.06E-03
76GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.06E-03
77GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.06E-03
78GO:0008235: metalloexopeptidase activity5.98E-03
79GO:0016722: oxidoreductase activity, oxidizing metal ions6.57E-03
80GO:0003747: translation release factor activity9.05E-03
81GO:0004805: trehalose-phosphatase activity1.14E-02
82GO:0004177: aminopeptidase activity1.26E-02
83GO:0003993: acid phosphatase activity1.28E-02
84GO:0051539: 4 iron, 4 sulfur cluster binding1.40E-02
85GO:0004089: carbonate dehydratase activity1.52E-02
86GO:0031072: heat shock protein binding1.52E-02
87GO:0004364: glutathione transferase activity1.52E-02
88GO:0008266: poly(U) RNA binding1.65E-02
89GO:0016491: oxidoreductase activity1.88E-02
90GO:0051536: iron-sulfur cluster binding2.08E-02
91GO:0004601: peroxidase activity2.11E-02
92GO:0045330: aspartyl esterase activity2.37E-02
93GO:0030570: pectate lyase activity2.71E-02
94GO:0004650: polygalacturonase activity2.79E-02
95GO:0030599: pectinesterase activity2.87E-02
96GO:0003727: single-stranded RNA binding2.88E-02
97GO:0003756: protein disulfide isomerase activity2.88E-02
98GO:0052689: carboxylic ester hydrolase activity3.13E-02
99GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.40E-02
100GO:0050662: coenzyme binding3.58E-02
101GO:0010181: FMN binding3.58E-02
102GO:0016758: transferase activity, transferring hexosyl groups3.71E-02
103GO:0046872: metal ion binding4.03E-02
104GO:0000156: phosphorelay response regulator activity4.33E-02
105GO:0008483: transaminase activity4.72E-02
106GO:0009055: electron carrier activity4.87E-02
107GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.89E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0000408: EKC/KEOPS complex0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0009515: granal stacked thylakoid0.00E+00
6GO:0009507: chloroplast7.64E-80
7GO:0009535: chloroplast thylakoid membrane2.56E-47
8GO:0009570: chloroplast stroma5.44E-41
9GO:0009941: chloroplast envelope1.32E-39
10GO:0009534: chloroplast thylakoid1.28E-37
11GO:0009579: thylakoid8.47E-32
12GO:0009543: chloroplast thylakoid lumen2.34E-30
13GO:0031977: thylakoid lumen4.65E-24
14GO:0005840: ribosome6.40E-17
15GO:0030095: chloroplast photosystem II1.27E-09
16GO:0009654: photosystem II oxygen evolving complex5.94E-09
17GO:0010007: magnesium chelatase complex6.12E-08
18GO:0019898: extrinsic component of membrane7.42E-08
19GO:0009706: chloroplast inner membrane1.02E-07
20GO:0031969: chloroplast membrane1.02E-06
21GO:0010287: plastoglobule3.10E-06
22GO:0048046: apoplast5.44E-06
23GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.96E-05
24GO:0009523: photosystem II5.10E-05
25GO:0000311: plastid large ribosomal subunit7.98E-05
26GO:0042651: thylakoid membrane2.19E-04
27GO:0015934: large ribosomal subunit2.39E-04
28GO:0009782: photosystem I antenna complex3.89E-04
29GO:0009538: photosystem I reaction center4.44E-04
30GO:0009505: plant-type cell wall7.08E-04
31GO:0000427: plastid-encoded plastid RNA polymerase complex8.44E-04
32GO:0042170: plastid membrane8.44E-04
33GO:0010319: stromule8.73E-04
34GO:0032040: small-subunit processome1.17E-03
35GO:0030076: light-harvesting complex1.68E-03
36GO:0042646: plastid nucleoid1.97E-03
37GO:0005960: glycine cleavage complex1.97E-03
38GO:0016020: membrane2.04E-03
39GO:0015935: small ribosomal subunit2.52E-03
40GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.20E-03
41GO:0016363: nuclear matrix5.06E-03
42GO:0009533: chloroplast stromal thylakoid5.98E-03
43GO:0005811: lipid particle7.98E-03
44GO:0022626: cytosolic ribosome8.68E-03
45GO:0005618: cell wall1.33E-02
46GO:0046658: anchored component of plasma membrane1.73E-02
47GO:0043234: protein complex1.94E-02
48GO:0009532: plastid stroma2.39E-02
49GO:0009522: photosystem I3.58E-02
50GO:0071944: cell periphery4.33E-02
51GO:0009536: plastid4.37E-02
52GO:0005778: peroxisomal membrane4.72E-02
53GO:0009295: nucleoid4.72E-02
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Gene type



Gene DE type