co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G16030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0019284: L-methionine salvage from S-adenosylmethionine	0.00E+00
6	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
7	GO:0090706: specification of plant organ position	0.00E+00
8	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
9	GO:0033494: ferulate metabolic process	0.00E+00
10	GO:0015979: photosynthesis	2.76E-15
11	GO:0009735: response to cytokinin	2.33E-08
12	GO:0006000: fructose metabolic process	4.49E-08
13	GO:0015976: carbon utilization	6.29E-07
14	GO:0009773: photosynthetic electron transport in photosystem I	1.19E-06
15	GO:0006094: gluconeogenesis	2.24E-06
16	GO:0015995: chlorophyll biosynthetic process	7.64E-06
17	GO:0046620: regulation of organ growth	1.14E-05
18	GO:0006002: fructose 6-phosphate metabolic process	1.63E-05
19	GO:0034220: ion transmembrane transport	2.37E-05
20	GO:0080170: hydrogen peroxide transmembrane transport	4.24E-05
21	GO:0006546: glycine catabolic process	7.53E-05
22	GO:0010037: response to carbon dioxide	7.53E-05
23	GO:0045727: positive regulation of translation	7.53E-05
24	GO:2000122: negative regulation of stomatal complex development	7.53E-05
25	GO:0005986: sucrose biosynthetic process	7.58E-05
26	GO:0019253: reductive pentose-phosphate cycle	9.14E-05
27	GO:0010207: photosystem II assembly	9.14E-05
28	GO:0006833: water transport	1.28E-04
29	GO:0018298: protein-chromophore linkage	1.40E-04
30	GO:0009409: response to cold	1.61E-04
31	GO:0042549: photosystem II stabilization	1.70E-04
32	GO:0009768: photosynthesis, light harvesting in photosystem I	1.73E-04
33	GO:0006810: transport	2.09E-04
34	GO:0010019: chloroplast-nucleus signaling pathway	2.30E-04
35	GO:0010196: nonphotochemical quenching	2.99E-04
36	GO:0043489: RNA stabilization	3.47E-04
37	GO:0071370: cellular response to gibberellin stimulus	3.47E-04
38	GO:0000481: maturation of 5S rRNA	3.47E-04
39	GO:0034337: RNA folding	3.47E-04
40	GO:0010450: inflorescence meristem growth	3.47E-04
41	GO:0071588: hydrogen peroxide mediated signaling pathway	3.47E-04
42	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.47E-04
43	GO:0042631: cellular response to water deprivation	3.53E-04
44	GO:0007623: circadian rhythm	4.04E-04
45	GO:0009657: plastid organization	4.61E-04
46	GO:0032544: plastid translation	4.61E-04
47	GO:0010206: photosystem II repair	5.52E-04
48	GO:0010205: photoinhibition	6.53E-04
49	GO:0034755: iron ion transmembrane transport	7.56E-04
50	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	7.56E-04
51	GO:0008152: metabolic process	7.73E-04
52	GO:0042742: defense response to bacterium	8.15E-04
53	GO:0043085: positive regulation of catalytic activity	8.76E-04
54	GO:0009750: response to fructose	8.76E-04
55	GO:0018119: peptidyl-cysteine S-nitrosylation	8.76E-04
56	GO:0006518: peptide metabolic process	1.22E-03
57	GO:0006013: mannose metabolic process	1.22E-03
58	GO:0006696: ergosterol biosynthetic process	1.22E-03
59	GO:0045493: xylan catabolic process	1.22E-03
60	GO:0045165: cell fate commitment	1.22E-03
61	GO:0005985: sucrose metabolic process	1.43E-03
62	GO:0006636: unsaturated fatty acid biosynthetic process	1.59E-03
63	GO:0034599: cellular response to oxidative stress	1.62E-03
64	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.76E-03
65	GO:2001141: regulation of RNA biosynthetic process	1.76E-03
66	GO:1902476: chloride transmembrane transport	1.76E-03
67	GO:0051513: regulation of monopolar cell growth	1.76E-03
68	GO:0010114: response to red light	2.12E-03
69	GO:0009926: auxin polar transport	2.12E-03
70	GO:0009644: response to high light intensity	2.35E-03
71	GO:0006542: glutamine biosynthetic process	2.37E-03
72	GO:0019676: ammonia assimilation cycle	2.37E-03
73	GO:0010023: proanthocyanidin biosynthetic process	2.37E-03
74	GO:0019464: glycine decarboxylation via glycine cleavage system	2.37E-03
75	GO:0015994: chlorophyll metabolic process	2.37E-03
76	GO:0030104: water homeostasis	2.37E-03
77	GO:2000038: regulation of stomatal complex development	2.37E-03
78	GO:0034052: positive regulation of plant-type hypersensitive response	3.03E-03
79	GO:0032543: mitochondrial translation	3.03E-03
80	GO:0045038: protein import into chloroplast thylakoid membrane	3.03E-03
81	GO:0006461: protein complex assembly	3.03E-03
82	GO:1902183: regulation of shoot apical meristem development	3.03E-03
83	GO:0010158: abaxial cell fate specification	3.03E-03
84	GO:0032876: negative regulation of DNA endoreduplication	3.03E-03
85	GO:0030308: negative regulation of cell growth	3.03E-03
86	GO:0009733: response to auxin	3.32E-03
87	GO:0000741: karyogamy	3.74E-03
88	GO:1902456: regulation of stomatal opening	3.74E-03
89	GO:0000302: response to reactive oxygen species	4.31E-03
90	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.50E-03
91	GO:2000037: regulation of stomatal complex patterning	4.50E-03
92	GO:0019509: L-methionine salvage from methylthioadenosine	4.50E-03
93	GO:0009723: response to ethylene	4.92E-03
94	GO:0050829: defense response to Gram-negative bacterium	5.32E-03
95	GO:0009772: photosynthetic electron transport in photosystem II	5.32E-03
96	GO:0006821: chloride transport	5.32E-03
97	GO:0009642: response to light intensity	6.17E-03
98	GO:0009850: auxin metabolic process	6.17E-03
99	GO:0043068: positive regulation of programmed cell death	6.17E-03
100	GO:0032508: DNA duplex unwinding	6.17E-03
101	GO:0010492: maintenance of shoot apical meristem identity	6.17E-03
102	GO:0006402: mRNA catabolic process	6.17E-03
103	GO:0030091: protein repair	6.17E-03
104	GO:0046686: response to cadmium ion	6.75E-03
105	GO:0042128: nitrate assimilation	6.96E-03
106	GO:0010093: specification of floral organ identity	7.08E-03
107	GO:0071482: cellular response to light stimulus	7.08E-03
108	GO:2000024: regulation of leaf development	8.04E-03
109	GO:0048507: meristem development	8.04E-03
110	GO:0000373: Group II intron splicing	8.04E-03
111	GO:0009051: pentose-phosphate shunt, oxidative branch	8.04E-03
112	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.04E-03
113	GO:0010218: response to far red light	8.99E-03
114	GO:0009638: phototropism	9.03E-03
115	GO:0009631: cold acclimation	9.43E-03
116	GO:0010119: regulation of stomatal movement	9.43E-03
117	GO:0045490: pectin catabolic process	9.78E-03
118	GO:0048829: root cap development	1.01E-02
119	GO:0006949: syncytium formation	1.01E-02
120	GO:0009299: mRNA transcription	1.01E-02
121	GO:0009637: response to blue light	1.03E-02
122	GO:0006879: cellular iron ion homeostasis	1.12E-02
123	GO:0006352: DNA-templated transcription, initiation	1.12E-02
124	GO:0000272: polysaccharide catabolic process	1.12E-02
125	GO:0010015: root morphogenesis	1.12E-02
126	GO:0019684: photosynthesis, light reaction	1.12E-02
127	GO:0009698: phenylpropanoid metabolic process	1.12E-02
128	GO:0009089: lysine biosynthetic process via diaminopimelate	1.12E-02
129	GO:0005983: starch catabolic process	1.23E-02
130	GO:0008361: regulation of cell size	1.23E-02
131	GO:0015706: nitrate transport	1.23E-02
132	GO:0006006: glucose metabolic process	1.34E-02
133	GO:2000028: regulation of photoperiodism, flowering	1.34E-02
134	GO:0009718: anthocyanin-containing compound biosynthetic process	1.34E-02
135	GO:0009744: response to sucrose	1.34E-02
136	GO:0009725: response to hormone	1.34E-02
137	GO:0009767: photosynthetic electron transport chain	1.34E-02
138	GO:0009651: response to salt stress	1.42E-02
139	GO:0009933: meristem structural organization	1.46E-02
140	GO:0010143: cutin biosynthetic process	1.46E-02
141	GO:0010167: response to nitrate	1.59E-02
142	GO:0010030: positive regulation of seed germination	1.59E-02
143	GO:0009734: auxin-activated signaling pathway	1.66E-02
144	GO:0009664: plant-type cell wall organization	1.68E-02
145	GO:0009658: chloroplast organization	1.70E-02
146	GO:0042254: ribosome biogenesis	1.75E-02
147	GO:0006364: rRNA processing	1.81E-02
148	GO:0005992: trehalose biosynthetic process	1.85E-02
149	GO:0009944: polarity specification of adaxial/abaxial axis	1.85E-02
150	GO:0006417: regulation of translation	2.00E-02
151	GO:0003333: amino acid transmembrane transport	2.12E-02
152	GO:0048511: rhythmic process	2.12E-02
153	GO:0061077: chaperone-mediated protein folding	2.12E-02
154	GO:0006096: glycolytic process	2.14E-02
155	GO:0019748: secondary metabolic process	2.26E-02
156	GO:0009814: defense response, incompatible interaction	2.26E-02
157	GO:0009626: plant-type hypersensitive response	2.28E-02
158	GO:0006979: response to oxidative stress	2.38E-02
159	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.40E-02
160	GO:0009740: gibberellic acid mediated signaling pathway	2.42E-02
161	GO:0042545: cell wall modification	2.50E-02
162	GO:0006284: base-excision repair	2.55E-02
163	GO:0006396: RNA processing	2.65E-02
164	GO:0016117: carotenoid biosynthetic process	2.70E-02
165	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.70E-02
166	GO:0045454: cell redox homeostasis	2.80E-02
167	GO:0042335: cuticle development	2.85E-02
168	GO:0080022: primary root development	2.85E-02
169	GO:0000413: protein peptidyl-prolyl isomerization	2.85E-02
170	GO:0010154: fruit development	3.01E-02
171	GO:0006662: glycerol ether metabolic process	3.01E-02
172	GO:0010197: polar nucleus fusion	3.01E-02
173	GO:0042752: regulation of circadian rhythm	3.17E-02
174	GO:0055085: transmembrane transport	3.32E-02
175	GO:0009749: response to glucose	3.33E-02
176	GO:0019252: starch biosynthetic process	3.33E-02
177	GO:0002229: defense response to oomycetes	3.50E-02
178	GO:0010193: response to ozone	3.50E-02
179	GO:0042744: hydrogen peroxide catabolic process	3.66E-02
180	GO:0009630: gravitropism	3.67E-02
181	GO:0006412: translation	3.76E-02
182	GO:0006397: mRNA processing	3.83E-02
183	GO:0071281: cellular response to iron ion	3.84E-02
184	GO:0010090: trichome morphogenesis	3.84E-02
185	GO:0030163: protein catabolic process	3.84E-02
186	GO:0009828: plant-type cell wall loosening	4.01E-02
187	GO:0006633: fatty acid biosynthetic process	4.04E-02
188	GO:0071805: potassium ion transmembrane transport	4.19E-02
189	GO:0040008: regulation of growth	4.23E-02
190	GO:0009451: RNA modification	4.53E-02
191	GO:0009739: response to gibberellin	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0046570: methylthioribulose 1-phosphate dehydratase activity	0.00E+00
2	GO:0043874: acireductone synthase activity	0.00E+00
3	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
9	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
10	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	0.00E+00
11	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
12	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
13	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
14	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
15	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.43E-06
16	GO:0019843: rRNA binding	2.63E-05
17	GO:0016851: magnesium chelatase activity	4.24E-05
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.71E-05
19	GO:0004089: carbonate dehydratase activity	7.58E-05
20	GO:0015250: water channel activity	8.60E-05
21	GO:0008266: poly(U) RNA binding	9.14E-05
22	GO:0016168: chlorophyll binding	9.53E-05
23	GO:0031409: pigment binding	1.28E-04
24	GO:0005528: FK506 binding	1.50E-04
25	GO:0004130: cytochrome-c peroxidase activity	1.70E-04
26	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.47E-04
27	GO:0009671: nitrate:proton symporter activity	3.47E-04
28	GO:0051996: squalene synthase activity	3.47E-04
29	GO:0045485: omega-6 fatty acid desaturase activity	3.47E-04
30	GO:0046906: tetrapyrrole binding	3.47E-04
31	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	3.47E-04
32	GO:0051537: 2 iron, 2 sulfur cluster binding	3.65E-04
33	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.56E-04
34	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.56E-04
35	GO:0008967: phosphoglycolate phosphatase activity	7.56E-04
36	GO:0047746: chlorophyllase activity	7.56E-04
37	GO:0042389: omega-3 fatty acid desaturase activity	7.56E-04
38	GO:0004618: phosphoglycerate kinase activity	7.56E-04
39	GO:0010297: heteropolysaccharide binding	7.56E-04
40	GO:0043425: bHLH transcription factor binding	7.56E-04
41	GO:0004047: aminomethyltransferase activity	7.56E-04
42	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.22E-03
43	GO:0050734: hydroxycinnamoyltransferase activity	1.22E-03
44	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.76E-03
45	GO:0005253: anion channel activity	2.37E-03
46	GO:0046556: alpha-L-arabinofuranosidase activity	2.37E-03
47	GO:0001053: plastid sigma factor activity	2.37E-03
48	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.37E-03
49	GO:0016987: sigma factor activity	2.37E-03
50	GO:0010328: auxin influx transmembrane transporter activity	2.37E-03
51	GO:0009044: xylan 1,4-beta-xylosidase activity	2.37E-03
52	GO:0004356: glutamate-ammonia ligase activity	3.03E-03
53	GO:0008725: DNA-3-methyladenine glycosylase activity	3.03E-03
54	GO:0016688: L-ascorbate peroxidase activity	3.74E-03
55	GO:0042578: phosphoric ester hydrolase activity	3.74E-03
56	GO:0005247: voltage-gated chloride channel activity	3.74E-03
57	GO:0004332: fructose-bisphosphate aldolase activity	3.74E-03
58	GO:0050662: coenzyme binding	3.75E-03
59	GO:0003735: structural constituent of ribosome	4.20E-03
60	GO:0016832: aldehyde-lyase activity	4.50E-03
61	GO:0004602: glutathione peroxidase activity	4.50E-03
62	GO:0004559: alpha-mannosidase activity	4.50E-03
63	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.50E-03
64	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.50E-03
65	GO:0019899: enzyme binding	5.32E-03
66	GO:0004564: beta-fructofuranosidase activity	6.17E-03
67	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.08E-03
68	GO:0015112: nitrate transmembrane transporter activity	9.03E-03
69	GO:0004575: sucrose alpha-glucosidase activity	9.03E-03
70	GO:0005381: iron ion transmembrane transporter activity	9.03E-03
71	GO:0004805: trehalose-phosphatase activity	1.01E-02
72	GO:0008047: enzyme activator activity	1.01E-02
73	GO:0031072: heat shock protein binding	1.34E-02
74	GO:0004185: serine-type carboxypeptidase activity	1.34E-02
75	GO:0015293: symporter activity	1.50E-02
76	GO:0008146: sulfotransferase activity	1.59E-02
77	GO:0015079: potassium ion transmembrane transporter activity	1.98E-02
78	GO:0045330: aspartyl esterase activity	2.00E-02
79	GO:0004707: MAP kinase activity	2.12E-02
80	GO:0004176: ATP-dependent peptidase activity	2.12E-02
81	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.21E-02
82	GO:0004650: polygalacturonase activity	2.35E-02
83	GO:0022891: substrate-specific transmembrane transporter activity	2.40E-02
84	GO:0030570: pectate lyase activity	2.40E-02
85	GO:0030599: pectinesterase activity	2.42E-02
86	GO:0003727: single-stranded RNA binding	2.55E-02
87	GO:0003756: protein disulfide isomerase activity	2.55E-02
88	GO:0047134: protein-disulfide reductase activity	2.70E-02
89	GO:0004791: thioredoxin-disulfide reductase activity	3.17E-02
90	GO:0016787: hydrolase activity	3.39E-02
91	GO:0016829: lyase activity	3.48E-02
92	GO:0004518: nuclease activity	3.67E-02
93	GO:0000156: phosphorelay response regulator activity	3.84E-02
94	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.84E-02
95	GO:0008483: transaminase activity	4.19E-02
96	GO:0016597: amino acid binding	4.36E-02
97	GO:0003729: mRNA binding	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	1.32E-44
4	GO:0009535: chloroplast thylakoid membrane	3.65E-42
5	GO:0009534: chloroplast thylakoid	2.18E-34
6	GO:0009941: chloroplast envelope	2.60E-29
7	GO:0009570: chloroplast stroma	1.59E-24
8	GO:0009579: thylakoid	2.01E-20
9	GO:0009543: chloroplast thylakoid lumen	1.34E-17
10	GO:0030095: chloroplast photosystem II	7.40E-10
11	GO:0010287: plastoglobule	5.29E-09
12	GO:0009523: photosystem II	4.35E-08
13	GO:0031977: thylakoid lumen	1.60E-06
14	GO:0010319: stromule	3.68E-06
15	GO:0009533: chloroplast stromal thylakoid	7.56E-06
16	GO:0010007: magnesium chelatase complex	1.92E-05
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.25E-05
18	GO:0009522: photosystem I	3.21E-05
19	GO:0048046: apoplast	1.35E-04
20	GO:0009706: chloroplast inner membrane	1.39E-04
21	GO:0009654: photosystem II oxygen evolving complex	1.73E-04
22	GO:0009783: photosystem II antenna complex	3.47E-04
23	GO:0009344: nitrite reductase complex [NAD(P)H]	3.47E-04
24	GO:0009547: plastid ribosome	3.47E-04
25	GO:0043674: columella	3.47E-04
26	GO:0009538: photosystem I reaction center	3.76E-04
27	GO:0016020: membrane	4.43E-04
28	GO:0019898: extrinsic component of membrane	4.70E-04
29	GO:0042170: plastid membrane	7.56E-04
30	GO:0080085: signal recognition particle, chloroplast targeting	7.56E-04
31	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.56E-04
32	GO:0030529: intracellular ribonucleoprotein complex	8.20E-04
33	GO:0000312: plastid small ribosomal subunit	1.27E-03
34	GO:0031969: chloroplast membrane	1.28E-03
35	GO:0009505: plant-type cell wall	1.40E-03
36	GO:0005960: glycine cleavage complex	1.76E-03
37	GO:0009531: secondary cell wall	1.76E-03
38	GO:0005775: vacuolar lumen	1.76E-03
39	GO:0042646: plastid nucleoid	1.76E-03
40	GO:0042651: thylakoid membrane	1.94E-03
41	GO:0005840: ribosome	2.86E-03
42	GO:0034707: chloride channel complex	3.74E-03
43	GO:0016363: nuclear matrix	4.50E-03
44	GO:0042807: central vacuole	5.32E-03
45	GO:0009295: nucleoid	5.55E-03
46	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.08E-03
47	GO:0042644: chloroplast nucleoid	8.04E-03
48	GO:0005763: mitochondrial small ribosomal subunit	8.04E-03
49	GO:0008180: COP9 signalosome	8.04E-03
50	GO:0005618: cell wall	8.68E-03
51	GO:0000311: plastid large ribosomal subunit	1.23E-02
52	GO:0032040: small-subunit processome	1.23E-02
53	GO:0009508: plastid chromosome	1.34E-02
54	GO:0005887: integral component of plasma membrane	1.57E-02
55	GO:0030076: light-harvesting complex	1.59E-02
56	GO:0015935: small ribosomal subunit	2.12E-02
57	GO:0005623: cell	3.31E-02
58	GO:0071944: cell periphery	3.84E-02
59	GO:0005773: vacuole	3.91E-02
60	GO:0009705: plant-type vacuole membrane	4.43E-02