co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G16010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0019323: pentose catabolic process	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
5	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0046322: negative regulation of fatty acid oxidation	0.00E+00
8	GO:0042493: response to drug	0.00E+00
9	GO:0010411: xyloglucan metabolic process	6.80E-05
10	GO:0016123: xanthophyll biosynthetic process	8.49E-05
11	GO:0042546: cell wall biogenesis	2.12E-04
12	GO:2000021: regulation of ion homeostasis	2.84E-04
13	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.84E-04
14	GO:0060627: regulation of vesicle-mediated transport	2.84E-04
15	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.84E-04
16	GO:0044262: cellular carbohydrate metabolic process	2.84E-04
17	GO:0043266: regulation of potassium ion transport	2.84E-04
18	GO:0080051: cutin transport	2.84E-04
19	GO:0005975: carbohydrate metabolic process	3.34E-04
20	GO:0071555: cell wall organization	3.92E-04
21	GO:0010198: synergid death	6.25E-04
22	GO:0015908: fatty acid transport	6.25E-04
23	GO:0045717: negative regulation of fatty acid biosynthetic process	6.25E-04
24	GO:0010541: acropetal auxin transport	6.25E-04
25	GO:0016024: CDP-diacylglycerol biosynthetic process	7.56E-04
26	GO:0010207: photosystem II assembly	9.62E-04
27	GO:0090506: axillary shoot meristem initiation	1.01E-03
28	GO:0010160: formation of animal organ boundary	1.01E-03
29	GO:0000280: nuclear division	1.01E-03
30	GO:1901562: response to paraquat	1.01E-03
31	GO:0006869: lipid transport	1.23E-03
32	GO:0051017: actin filament bundle assembly	1.32E-03
33	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.45E-03
34	GO:0007231: osmosensory signaling pathway	1.45E-03
35	GO:0051639: actin filament network formation	1.45E-03
36	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.45E-03
37	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.45E-03
38	GO:0009650: UV protection	1.45E-03
39	GO:0007017: microtubule-based process	1.45E-03
40	GO:0010306: rhamnogalacturonan II biosynthetic process	1.45E-03
41	GO:1901332: negative regulation of lateral root development	1.45E-03
42	GO:0050482: arachidonic acid secretion	1.45E-03
43	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.91E-03
44	GO:0009755: hormone-mediated signaling pathway	1.94E-03
45	GO:0010222: stem vascular tissue pattern formation	1.94E-03
46	GO:0051764: actin crosslink formation	1.94E-03
47	GO:0009765: photosynthesis, light harvesting	1.94E-03
48	GO:0006085: acetyl-CoA biosynthetic process	1.94E-03
49	GO:0006183: GTP biosynthetic process	1.94E-03
50	GO:0033500: carbohydrate homeostasis	1.94E-03
51	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.94E-03
52	GO:0009956: radial pattern formation	1.94E-03
53	GO:0009107: lipoate biosynthetic process	2.48E-03
54	GO:0010438: cellular response to sulfur starvation	2.48E-03
55	GO:0080110: sporopollenin biosynthetic process	2.48E-03
56	GO:0016120: carotene biosynthetic process	2.48E-03
57	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.06E-03
58	GO:0006655: phosphatidylglycerol biosynthetic process	3.06E-03
59	GO:0060918: auxin transport	3.06E-03
60	GO:0006796: phosphate-containing compound metabolic process	3.06E-03
61	GO:0006014: D-ribose metabolic process	3.06E-03
62	GO:0010067: procambium histogenesis	3.68E-03
63	GO:0031930: mitochondria-nucleus signaling pathway	3.68E-03
64	GO:0009612: response to mechanical stimulus	3.68E-03
65	GO:0009082: branched-chain amino acid biosynthetic process	3.68E-03
66	GO:0009942: longitudinal axis specification	3.68E-03
67	GO:0009099: valine biosynthetic process	3.68E-03
68	GO:0009828: plant-type cell wall loosening	3.89E-03
69	GO:0009645: response to low light intensity stimulus	4.34E-03
70	GO:0010027: thylakoid membrane organization	4.64E-03
71	GO:0006644: phospholipid metabolic process	5.03E-03
72	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.03E-03
73	GO:0009819: drought recovery	5.03E-03
74	GO:0010439: regulation of glucosinolate biosynthetic process	5.03E-03
75	GO:0009704: de-etiolation	5.03E-03
76	GO:2000070: regulation of response to water deprivation	5.03E-03
77	GO:0071482: cellular response to light stimulus	5.77E-03
78	GO:0009097: isoleucine biosynthetic process	5.77E-03
79	GO:0007389: pattern specification process	5.77E-03
80	GO:0006633: fatty acid biosynthetic process	5.95E-03
81	GO:0016042: lipid catabolic process	6.05E-03
82	GO:0009817: defense response to fungus, incompatible interaction	6.06E-03
83	GO:0009638: phototropism	7.35E-03
84	GO:0009098: leucine biosynthetic process	7.35E-03
85	GO:0016051: carbohydrate biosynthetic process	7.68E-03
86	GO:0006949: syncytium formation	8.19E-03
87	GO:0010015: root morphogenesis	9.06E-03
88	GO:0006816: calcium ion transport	9.06E-03
89	GO:0009682: induced systemic resistance	9.06E-03
90	GO:0019684: photosynthesis, light reaction	9.06E-03
91	GO:0009926: auxin polar transport	9.92E-03
92	GO:0008361: regulation of cell size	9.96E-03
93	GO:0010105: negative regulation of ethylene-activated signaling pathway	9.96E-03
94	GO:0009644: response to high light intensity	1.07E-02
95	GO:0050826: response to freezing	1.09E-02
96	GO:0010588: cotyledon vascular tissue pattern formation	1.09E-02
97	GO:0009826: unidimensional cell growth	1.12E-02
98	GO:0010540: basipetal auxin transport	1.19E-02
99	GO:0010143: cutin biosynthetic process	1.19E-02
100	GO:0009933: meristem structural organization	1.19E-02
101	GO:0010223: secondary shoot formation	1.19E-02
102	GO:0009664: plant-type cell wall organization	1.25E-02
103	GO:0042538: hyperosmotic salinity response	1.25E-02
104	GO:0070588: calcium ion transmembrane transport	1.29E-02
105	GO:0006833: water transport	1.39E-02
106	GO:0010025: wax biosynthetic process	1.39E-02
107	GO:0010431: seed maturation	1.72E-02
108	GO:0016998: cell wall macromolecule catabolic process	1.72E-02
109	GO:0015979: photosynthesis	1.82E-02
110	GO:0031348: negative regulation of defense response	1.83E-02
111	GO:0030245: cellulose catabolic process	1.83E-02
112	GO:0009624: response to nematode	1.91E-02
113	GO:0009737: response to abscisic acid	1.93E-02
114	GO:0009625: response to insect	1.95E-02
115	GO:0006012: galactose metabolic process	1.95E-02
116	GO:0009294: DNA mediated transformation	1.95E-02
117	GO:0009411: response to UV	1.95E-02
118	GO:0001944: vasculature development	1.95E-02
119	GO:0010089: xylem development	2.07E-02
120	GO:0010584: pollen exine formation	2.07E-02
121	GO:0048443: stamen development	2.07E-02
122	GO:0006284: base-excision repair	2.07E-02
123	GO:0019722: calcium-mediated signaling	2.07E-02
124	GO:0009306: protein secretion	2.07E-02
125	GO:0055085: transmembrane transport	2.15E-02
126	GO:0016117: carotenoid biosynthetic process	2.19E-02
127	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.19E-02
128	GO:0010087: phloem or xylem histogenesis	2.31E-02
129	GO:0042335: cuticle development	2.31E-02
130	GO:0034220: ion transmembrane transport	2.31E-02
131	GO:0000413: protein peptidyl-prolyl isomerization	2.31E-02
132	GO:0048868: pollen tube development	2.44E-02
133	GO:0009958: positive gravitropism	2.44E-02
134	GO:0010305: leaf vascular tissue pattern formation	2.44E-02
135	GO:0006629: lipid metabolic process	2.52E-02
136	GO:0019252: starch biosynthetic process	2.70E-02
137	GO:0071554: cell wall organization or biogenesis	2.83E-02
138	GO:0010583: response to cyclopentenone	2.97E-02
139	GO:1901657: glycosyl compound metabolic process	3.11E-02
140	GO:0016125: sterol metabolic process	3.25E-02
141	GO:0010252: auxin homeostasis	3.25E-02
142	GO:0009639: response to red or far red light	3.25E-02
143	GO:0007267: cell-cell signaling	3.39E-02
144	GO:0051607: defense response to virus	3.54E-02
145	GO:0016126: sterol biosynthetic process	3.68E-02
146	GO:0009739: response to gibberellin	3.70E-02
147	GO:0007166: cell surface receptor signaling pathway	3.78E-02
148	GO:0009734: auxin-activated signaling pathway	3.85E-02
149	GO:0009617: response to bacterium	3.94E-02
150	GO:0042128: nitrate assimilation	3.98E-02
151	GO:0009414: response to water deprivation	4.11E-02
152	GO:0016311: dephosphorylation	4.29E-02
153	GO:0000160: phosphorelay signal transduction system	4.60E-02
154	GO:0010311: lateral root formation	4.60E-02
155	GO:0009407: toxin catabolic process	4.76E-02
156	GO:0010218: response to far red light	4.76E-02
157	GO:0007165: signal transduction	4.82E-02
158	GO:0009738: abscisic acid-activated signaling pathway	4.90E-02
159	GO:0007568: aging	4.93E-02
160	GO:0048527: lateral root development	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
6	GO:0004496: mevalonate kinase activity	0.00E+00
7	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
9	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	3.71E-06
10	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.19E-05
11	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.38E-05
12	GO:0016798: hydrolase activity, acting on glycosyl bonds	6.80E-05
13	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.23E-04
14	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.84E-04
15	GO:0005227: calcium activated cation channel activity	2.84E-04
16	GO:0008252: nucleotidase activity	2.84E-04
17	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.84E-04
18	GO:0015245: fatty acid transporter activity	2.84E-04
19	GO:0003938: IMP dehydrogenase activity	6.25E-04
20	GO:0004750: ribulose-phosphate 3-epimerase activity	6.25E-04
21	GO:0030385: ferredoxin:thioredoxin reductase activity	6.25E-04
22	GO:0004565: beta-galactosidase activity	8.57E-04
23	GO:0010329: auxin efflux transmembrane transporter activity	8.57E-04
24	GO:0016992: lipoate synthase activity	1.01E-03
25	GO:0030267: glyoxylate reductase (NADP) activity	1.01E-03
26	GO:0052654: L-leucine transaminase activity	1.45E-03
27	GO:0052655: L-valine transaminase activity	1.45E-03
28	GO:0001872: (1->3)-beta-D-glucan binding	1.45E-03
29	GO:0003878: ATP citrate synthase activity	1.45E-03
30	GO:0052656: L-isoleucine transaminase activity	1.45E-03
31	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.86E-03
32	GO:0016836: hydro-lyase activity	1.94E-03
33	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.94E-03
34	GO:0052793: pectin acetylesterase activity	1.94E-03
35	GO:0004084: branched-chain-amino-acid transaminase activity	1.94E-03
36	GO:0008725: DNA-3-methyladenine glycosylase activity	2.48E-03
37	GO:0004623: phospholipase A2 activity	2.48E-03
38	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.06E-03
39	GO:0080030: methyl indole-3-acetate esterase activity	3.06E-03
40	GO:0004629: phospholipase C activity	3.06E-03
41	GO:0051015: actin filament binding	3.66E-03
42	GO:0004747: ribokinase activity	3.68E-03
43	GO:0051753: mannan synthase activity	3.68E-03
44	GO:0004017: adenylate kinase activity	3.68E-03
45	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.68E-03
46	GO:0004435: phosphatidylinositol phospholipase C activity	3.68E-03
47	GO:0005200: structural constituent of cytoskeleton	4.14E-03
48	GO:0004427: inorganic diphosphatase activity	4.34E-03
49	GO:0043295: glutathione binding	4.34E-03
50	GO:0004871: signal transducer activity	4.93E-03
51	GO:0004034: aldose 1-epimerase activity	5.03E-03
52	GO:0004033: aldo-keto reductase (NADP) activity	5.03E-03
53	GO:0008865: fructokinase activity	5.03E-03
54	GO:0009672: auxin:proton symporter activity	7.35E-03
55	GO:0015020: glucuronosyltransferase activity	8.19E-03
56	GO:0047372: acylglycerol lipase activity	9.06E-03
57	GO:0008378: galactosyltransferase activity	9.96E-03
58	GO:0008289: lipid binding	1.04E-02
59	GO:0005262: calcium channel activity	1.09E-02
60	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.16E-02
61	GO:0016788: hydrolase activity, acting on ester bonds	1.20E-02
62	GO:0005528: FK506 binding	1.50E-02
63	GO:0045735: nutrient reservoir activity	1.59E-02
64	GO:0033612: receptor serine/threonine kinase binding	1.72E-02
65	GO:0052689: carboxylic ester hydrolase activity	1.75E-02
66	GO:0030570: pectate lyase activity	1.95E-02
67	GO:0008810: cellulase activity	1.95E-02
68	GO:0005102: receptor binding	2.19E-02
69	GO:0003924: GTPase activity	2.52E-02
70	GO:0016853: isomerase activity	2.57E-02
71	GO:0050662: coenzyme binding	2.57E-02
72	GO:0019901: protein kinase binding	2.70E-02
73	GO:0048038: quinone binding	2.83E-02
74	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.08E-02
75	GO:0000156: phosphorelay response regulator activity	3.11E-02
76	GO:0016791: phosphatase activity	3.25E-02
77	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.39E-02
78	GO:0016413: O-acetyltransferase activity	3.54E-02
79	GO:0015250: water channel activity	3.68E-02
80	GO:0005509: calcium ion binding	3.79E-02
81	GO:0008375: acetylglucosaminyltransferase activity	3.98E-02
82	GO:0102483: scopolin beta-glucosidase activity	4.13E-02
83	GO:0030247: polysaccharide binding	4.13E-02
84	GO:0004721: phosphoprotein phosphatase activity	4.13E-02
85	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.45E-02
86	GO:0008168: methyltransferase activity	4.90E-02
87	GO:0030145: manganese ion binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009543: chloroplast thylakoid lumen	4.03E-08
2	GO:0048046: apoplast	2.73E-07
3	GO:0031977: thylakoid lumen	6.54E-07
4	GO:0031225: anchored component of membrane	7.79E-07
5	GO:0005618: cell wall	2.65E-06
6	GO:0005886: plasma membrane	4.32E-06
7	GO:0009507: chloroplast	8.54E-06
8	GO:0009534: chloroplast thylakoid	1.58E-05
9	GO:0009535: chloroplast thylakoid membrane	8.40E-05
10	GO:0009570: chloroplast stroma	1.38E-04
11	GO:0046658: anchored component of plasma membrane	3.94E-04
12	GO:0009579: thylakoid	4.19E-04
13	GO:0005576: extracellular region	5.65E-04
14	GO:0009505: plant-type cell wall	6.86E-04
15	GO:0009897: external side of plasma membrane	1.01E-03
16	GO:0015630: microtubule cytoskeleton	1.45E-03
17	GO:0009654: photosystem II oxygen evolving complex	1.45E-03
18	GO:0032432: actin filament bundle	1.45E-03
19	GO:0009346: citrate lyase complex	1.45E-03
20	GO:0019898: extrinsic component of membrane	3.01E-03
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.54E-03
22	GO:0045298: tubulin complex	6.54E-03
23	GO:0016020: membrane	8.95E-03
24	GO:0005884: actin filament	9.06E-03
25	GO:0030095: chloroplast photosystem II	1.19E-02
26	GO:0005875: microtubule associated complex	1.39E-02
27	GO:0005874: microtubule	1.47E-02
28	GO:0031410: cytoplasmic vesicle	1.83E-02
29	GO:0009506: plasmodesma	1.84E-02
30	GO:0015629: actin cytoskeleton	1.95E-02
31	GO:0010287: plastoglobule	2.27E-02
32	GO:0010319: stromule	3.39E-02
33	GO:0009941: chloroplast envelope	3.63E-02
34	GO:0005615: extracellular space	3.70E-02
35	GO:0009707: chloroplast outer membrane	4.45E-02
36	GO:0000151: ubiquitin ligase complex	4.45E-02