co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G14660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:1905499: trichome papilla formation	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0006223: uracil salvage	0.00E+00
8	GO:0042821: pyridoxal biosynthetic process	0.00E+00
9	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
10	GO:0097164: ammonium ion metabolic process	0.00E+00
11	GO:0042820: vitamin B6 catabolic process	0.00E+00
12	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
13	GO:0010027: thylakoid membrane organization	1.05E-07
14	GO:0009658: chloroplast organization	1.25E-06
15	GO:0010207: photosystem II assembly	1.99E-06
16	GO:0018026: peptidyl-lysine monomethylation	4.28E-06
17	GO:0006353: DNA-templated transcription, termination	8.33E-06
18	GO:0032544: plastid translation	1.20E-05
19	GO:0090391: granum assembly	1.52E-05
20	GO:0015995: chlorophyll biosynthetic process	8.33E-05
21	GO:0016123: xanthophyll biosynthetic process	9.62E-05
22	GO:0010190: cytochrome b6f complex assembly	1.39E-04
23	GO:0006633: fatty acid biosynthetic process	2.39E-04
24	GO:0010196: nonphotochemical quenching	2.48E-04
25	GO:1904964: positive regulation of phytol biosynthetic process	3.07E-04
26	GO:0042371: vitamin K biosynthetic process	3.07E-04
27	GO:1902458: positive regulation of stomatal opening	3.07E-04
28	GO:0034337: RNA folding	3.07E-04
29	GO:0019354: siroheme biosynthetic process	3.07E-04
30	GO:0005980: glycogen catabolic process	3.07E-04
31	GO:0009443: pyridoxal 5'-phosphate salvage	3.07E-04
32	GO:1904966: positive regulation of vitamin E biosynthetic process	3.07E-04
33	GO:0048564: photosystem I assembly	3.13E-04
34	GO:0042255: ribosome assembly	3.13E-04
35	GO:0032502: developmental process	4.42E-04
36	GO:0009828: plant-type cell wall loosening	5.20E-04
37	GO:0080009: mRNA methylation	6.71E-04
38	GO:0006529: asparagine biosynthetic process	6.71E-04
39	GO:0008616: queuosine biosynthetic process	6.71E-04
40	GO:0006729: tetrahydrobiopterin biosynthetic process	6.71E-04
41	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.71E-04
42	GO:0043039: tRNA aminoacylation	6.71E-04
43	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.71E-04
44	GO:0019388: galactose catabolic process	6.71E-04
45	GO:0070981: L-asparagine biosynthetic process	6.71E-04
46	GO:0010411: xyloglucan metabolic process	8.01E-04
47	GO:0051604: protein maturation	1.09E-03
48	GO:0015979: photosynthesis	1.17E-03
49	GO:0009102: biotin biosynthetic process	1.56E-03
50	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.56E-03
51	GO:0009650: UV protection	1.56E-03
52	GO:0006424: glutamyl-tRNA aminoacylation	1.56E-03
53	GO:0009590: detection of gravity	1.56E-03
54	GO:0050482: arachidonic acid secretion	1.56E-03
55	GO:0042546: cell wall biogenesis	1.77E-03
56	GO:0016998: cell wall macromolecule catabolic process	1.78E-03
57	GO:0015976: carbon utilization	2.09E-03
58	GO:0009765: photosynthesis, light harvesting	2.09E-03
59	GO:0030007: cellular potassium ion homeostasis	2.09E-03
60	GO:0006021: inositol biosynthetic process	2.09E-03
61	GO:0044206: UMP salvage	2.09E-03
62	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.12E-03
63	GO:0009664: plant-type cell wall organization	2.25E-03
64	GO:0031365: N-terminal protein amino acid modification	2.67E-03
65	GO:0006665: sphingolipid metabolic process	2.67E-03
66	GO:0080110: sporopollenin biosynthetic process	2.67E-03
67	GO:0048359: mucilage metabolic process involved in seed coat development	2.67E-03
68	GO:0016120: carotene biosynthetic process	2.67E-03
69	GO:0032543: mitochondrial translation	2.67E-03
70	GO:0043097: pyrimidine nucleoside salvage	2.67E-03
71	GO:0010236: plastoquinone biosynthetic process	2.67E-03
72	GO:0045038: protein import into chloroplast thylakoid membrane	2.67E-03
73	GO:0000413: protein peptidyl-prolyl isomerization	2.70E-03
74	GO:0042335: cuticle development	2.70E-03
75	GO:0042254: ribosome biogenesis	3.06E-03
76	GO:0006014: D-ribose metabolic process	3.30E-03
77	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.30E-03
78	GO:0042793: transcription from plastid promoter	3.30E-03
79	GO:0006206: pyrimidine nucleobase metabolic process	3.30E-03
80	GO:0009117: nucleotide metabolic process	3.30E-03
81	GO:0046855: inositol phosphate dephosphorylation	3.30E-03
82	GO:0019252: starch biosynthetic process	3.35E-03
83	GO:0010555: response to mannitol	3.97E-03
84	GO:0071470: cellular response to osmotic stress	3.97E-03
85	GO:0042372: phylloquinone biosynthetic process	3.97E-03
86	GO:1901259: chloroplast rRNA processing	3.97E-03
87	GO:0009772: photosynthetic electron transport in photosystem II	4.68E-03
88	GO:0006400: tRNA modification	4.68E-03
89	GO:2000070: regulation of response to water deprivation	5.44E-03
90	GO:0006644: phospholipid metabolic process	5.44E-03
91	GO:0045292: mRNA cis splicing, via spliceosome	5.44E-03
92	GO:0005978: glycogen biosynthetic process	5.44E-03
93	GO:0009642: response to light intensity	5.44E-03
94	GO:0071555: cell wall organization	5.54E-03
95	GO:0042128: nitrate assimilation	5.79E-03
96	GO:0017004: cytochrome complex assembly	6.23E-03
97	GO:0015996: chlorophyll catabolic process	6.23E-03
98	GO:0007186: G-protein coupled receptor signaling pathway	6.23E-03
99	GO:0009817: defense response to fungus, incompatible interaction	6.77E-03
100	GO:0032259: methylation	7.00E-03
101	GO:0000373: Group II intron splicing	7.07E-03
102	GO:0015780: nucleotide-sugar transport	7.07E-03
103	GO:0034765: regulation of ion transmembrane transport	7.07E-03
104	GO:0006783: heme biosynthetic process	7.07E-03
105	GO:0006779: porphyrin-containing compound biosynthetic process	7.94E-03
106	GO:0042761: very long-chain fatty acid biosynthetic process	7.94E-03
107	GO:0043069: negative regulation of programmed cell death	8.84E-03
108	GO:0006949: syncytium formation	8.84E-03
109	GO:0006782: protoporphyrinogen IX biosynthetic process	8.84E-03
110	GO:0007166: cell surface receptor signaling pathway	9.17E-03
111	GO:0019684: photosynthesis, light reaction	9.79E-03
112	GO:0006415: translational termination	9.79E-03
113	GO:0006631: fatty acid metabolic process	1.02E-02
114	GO:0006790: sulfur compound metabolic process	1.08E-02
115	GO:0006412: translation	1.08E-02
116	GO:0045037: protein import into chloroplast stroma	1.08E-02
117	GO:0050826: response to freezing	1.18E-02
118	GO:0009767: photosynthetic electron transport chain	1.18E-02
119	GO:0006006: glucose metabolic process	1.18E-02
120	GO:0009266: response to temperature stimulus	1.28E-02
121	GO:0009826: unidimensional cell growth	1.28E-02
122	GO:0006541: glutamine metabolic process	1.28E-02
123	GO:0010020: chloroplast fission	1.28E-02
124	GO:0046854: phosphatidylinositol phosphorylation	1.39E-02
125	GO:0010167: response to nitrate	1.39E-02
126	GO:0019853: L-ascorbic acid biosynthetic process	1.39E-02
127	GO:0042538: hyperosmotic salinity response	1.40E-02
128	GO:0010025: wax biosynthetic process	1.50E-02
129	GO:0009735: response to cytokinin	1.56E-02
130	GO:0019344: cysteine biosynthetic process	1.62E-02
131	GO:0009116: nucleoside metabolic process	1.62E-02
132	GO:0000027: ribosomal large subunit assembly	1.62E-02
133	GO:0051017: actin filament bundle assembly	1.62E-02
134	GO:0019953: sexual reproduction	1.74E-02
135	GO:0006418: tRNA aminoacylation for protein translation	1.74E-02
136	GO:0007017: microtubule-based process	1.74E-02
137	GO:0051260: protein homooligomerization	1.86E-02
138	GO:0031348: negative regulation of defense response	1.98E-02
139	GO:0006012: galactose metabolic process	2.11E-02
140	GO:0009411: response to UV	2.11E-02
141	GO:0045454: cell redox homeostasis	2.22E-02
142	GO:0010584: pollen exine formation	2.24E-02
143	GO:0010091: trichome branching	2.24E-02
144	GO:0019722: calcium-mediated signaling	2.24E-02
145	GO:0016117: carotenoid biosynthetic process	2.37E-02
146	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.37E-02
147	GO:0008033: tRNA processing	2.50E-02
148	GO:0006869: lipid transport	2.50E-02
149	GO:0080022: primary root development	2.50E-02
150	GO:0015031: protein transport	2.58E-02
151	GO:0006457: protein folding	2.61E-02
152	GO:0010182: sugar mediated signaling pathway	2.64E-02
153	GO:0009646: response to absence of light	2.78E-02
154	GO:0071554: cell wall organization or biogenesis	3.07E-02
155	GO:0009790: embryo development	3.13E-02
156	GO:0010583: response to cyclopentenone	3.21E-02
157	GO:0005975: carbohydrate metabolic process	3.46E-02
158	GO:0007267: cell-cell signaling	3.67E-02
159	GO:0071805: potassium ion transmembrane transport	3.67E-02
160	GO:0051607: defense response to virus	3.83E-02
161	GO:0010029: regulation of seed germination	4.15E-02
162	GO:0009627: systemic acquired resistance	4.31E-02
163	GO:0008380: RNA splicing	4.40E-02
164	GO:0006508: proteolysis	4.64E-02
165	GO:0018298: protein-chromophore linkage	4.81E-02
166	GO:0009813: flavonoid biosynthetic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
4	GO:0004076: biotin synthase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
7	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
8	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
9	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
10	GO:0015269: calcium-activated potassium channel activity	0.00E+00
11	GO:0004851: uroporphyrin-III C-methyltransferase activity	0.00E+00
12	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
13	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
14	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
15	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
16	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
17	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
18	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
19	GO:0019843: rRNA binding	1.13E-06
20	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.28E-06
21	GO:0016279: protein-lysine N-methyltransferase activity	6.10E-05
22	GO:0051920: peroxiredoxin activity	1.90E-04
23	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.07E-04
24	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.07E-04
25	GO:0004560: alpha-L-fucosidase activity	3.07E-04
26	GO:0008184: glycogen phosphorylase activity	3.07E-04
27	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.07E-04
28	GO:0080132: fatty acid alpha-hydroxylase activity	3.07E-04
29	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	3.07E-04
30	GO:0004831: tyrosine-tRNA ligase activity	3.07E-04
31	GO:0004645: phosphorylase activity	3.07E-04
32	GO:0004071: aspartate-ammonia ligase activity	3.07E-04
33	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	3.07E-04
34	GO:0004853: uroporphyrinogen decarboxylase activity	3.07E-04
35	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.07E-04
36	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.07E-04
37	GO:0016209: antioxidant activity	3.13E-04
38	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.05E-04
39	GO:0052832: inositol monophosphate 3-phosphatase activity	6.71E-04
40	GO:0008479: queuine tRNA-ribosyltransferase activity	6.71E-04
41	GO:0008934: inositol monophosphate 1-phosphatase activity	6.71E-04
42	GO:0052833: inositol monophosphate 4-phosphatase activity	6.71E-04
43	GO:0004614: phosphoglucomutase activity	6.71E-04
44	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	6.71E-04
45	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	6.71E-04
46	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.01E-04
47	GO:0070402: NADPH binding	1.09E-03
48	GO:0005504: fatty acid binding	1.09E-03
49	GO:0004148: dihydrolipoyl dehydrogenase activity	1.09E-03
50	GO:0004751: ribose-5-phosphate isomerase activity	1.09E-03
51	GO:0051539: 4 iron, 4 sulfur cluster binding	1.44E-03
52	GO:0043023: ribosomal large subunit binding	1.56E-03
53	GO:0035529: NADH pyrophosphatase activity	1.56E-03
54	GO:0016149: translation release factor activity, codon specific	1.56E-03
55	GO:0016851: magnesium chelatase activity	1.56E-03
56	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.56E-03
57	GO:0004659: prenyltransferase activity	2.09E-03
58	GO:0004845: uracil phosphoribosyltransferase activity	2.09E-03
59	GO:0016836: hydro-lyase activity	2.09E-03
60	GO:0045430: chalcone isomerase activity	2.09E-03
61	GO:0043495: protein anchor	2.09E-03
62	GO:0003727: single-stranded RNA binding	2.31E-03
63	GO:0009922: fatty acid elongase activity	2.67E-03
64	GO:0004623: phospholipase A2 activity	2.67E-03
65	GO:0004040: amidase activity	2.67E-03
66	GO:0008168: methyltransferase activity	2.81E-03
67	GO:0004601: peroxidase activity	2.98E-03
68	GO:0015271: outward rectifier potassium channel activity	3.30E-03
69	GO:0080030: methyl indole-3-acetate esterase activity	3.30E-03
70	GO:0016462: pyrophosphatase activity	3.30E-03
71	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.97E-03
72	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.97E-03
73	GO:0051753: mannan synthase activity	3.97E-03
74	GO:0004849: uridine kinase activity	3.97E-03
75	GO:0004747: ribokinase activity	3.97E-03
76	GO:0008237: metallopeptidase activity	4.62E-03
77	GO:0008235: metalloexopeptidase activity	4.68E-03
78	GO:0019899: enzyme binding	4.68E-03
79	GO:0043295: glutathione binding	4.68E-03
80	GO:0004034: aldose 1-epimerase activity	5.44E-03
81	GO:0004033: aldo-keto reductase (NADP) activity	5.44E-03
82	GO:0008865: fructokinase activity	5.44E-03
83	GO:0005267: potassium channel activity	6.23E-03
84	GO:0003747: translation release factor activity	7.07E-03
85	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	7.07E-03
86	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.07E-03
87	GO:0003735: structural constituent of ribosome	7.66E-03
88	GO:0004864: protein phosphatase inhibitor activity	8.84E-03
89	GO:0004177: aminopeptidase activity	9.79E-03
90	GO:0008378: galactosyltransferase activity	1.08E-02
91	GO:0004089: carbonate dehydratase activity	1.18E-02
92	GO:0031072: heat shock protein binding	1.18E-02
93	GO:0005509: calcium ion binding	1.49E-02
94	GO:0003690: double-stranded DNA binding	1.55E-02
95	GO:0005528: FK506 binding	1.62E-02
96	GO:0005216: ion channel activity	1.74E-02
97	GO:0004176: ATP-dependent peptidase activity	1.86E-02
98	GO:0022891: substrate-specific transmembrane transporter activity	2.11E-02
99	GO:0008514: organic anion transmembrane transporter activity	2.24E-02
100	GO:0004812: aminoacyl-tRNA ligase activity	2.37E-02
101	GO:0003713: transcription coactivator activity	2.64E-02
102	GO:0016491: oxidoreductase activity	2.73E-02
103	GO:0016853: isomerase activity	2.78E-02
104	GO:0050662: coenzyme binding	2.78E-02
105	GO:0003723: RNA binding	2.86E-02
106	GO:0051015: actin filament binding	3.36E-02
107	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.67E-02
108	GO:0005200: structural constituent of cytoskeleton	3.67E-02
109	GO:0016413: O-acetyltransferase activity	3.83E-02
110	GO:0016168: chlorophyll binding	4.15E-02
111	GO:0008289: lipid binding	4.34E-02
112	GO:0008236: serine-type peptidase activity	4.64E-02
113	GO:0042802: identical protein binding	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009507: chloroplast	2.65E-39
5	GO:0009570: chloroplast stroma	5.09E-26
6	GO:0009535: chloroplast thylakoid membrane	8.48E-22
7	GO:0009579: thylakoid	6.60E-15
8	GO:0009941: chloroplast envelope	8.50E-13
9	GO:0009534: chloroplast thylakoid	1.70E-12
10	GO:0009543: chloroplast thylakoid lumen	4.65E-12
11	GO:0031977: thylakoid lumen	1.17E-09
12	GO:0009654: photosystem II oxygen evolving complex	5.32E-06
13	GO:0048046: apoplast	1.50E-05
14	GO:0019898: extrinsic component of membrane	2.58E-05
15	GO:0042651: thylakoid membrane	1.33E-04
16	GO:0005618: cell wall	2.88E-04
17	GO:0009923: fatty acid elongase complex	3.07E-04
18	GO:0009344: nitrite reductase complex [NAD(P)H]	3.07E-04
19	GO:0010319: stromule	5.63E-04
20	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.71E-04
21	GO:0009536: plastid	8.53E-04
22	GO:0009508: plastid chromosome	9.50E-04
23	GO:0009528: plastid inner membrane	1.09E-03
24	GO:0010007: magnesium chelatase complex	1.09E-03
25	GO:0009532: plastid stroma	1.78E-03
26	GO:0005840: ribosome	1.90E-03
27	GO:0009527: plastid outer membrane	2.09E-03
28	GO:0009526: plastid envelope	2.09E-03
29	GO:0046658: anchored component of plasma membrane	2.35E-03
30	GO:0055035: plastid thylakoid membrane	2.67E-03
31	GO:0009505: plant-type cell wall	2.82E-03
32	GO:0031969: chloroplast membrane	4.14E-03
33	GO:0009295: nucleoid	4.62E-03
34	GO:0009533: chloroplast stromal thylakoid	4.68E-03
35	GO:0009707: chloroplast outer membrane	6.77E-03
36	GO:0045298: tubulin complex	7.07E-03
37	GO:0032040: small-subunit processome	1.08E-02
38	GO:0030095: chloroplast photosystem II	1.28E-02
39	GO:0015935: small ribosomal subunit	1.86E-02
40	GO:0031410: cytoplasmic vesicle	1.98E-02
41	GO:0015629: actin cytoskeleton	2.11E-02
42	GO:0009706: chloroplast inner membrane	2.14E-02
43	GO:0009523: photosystem II	2.92E-02
44	GO:0031225: anchored component of membrane	3.43E-02
45	GO:0016020: membrane	4.20E-02