co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G14260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0034220: ion transmembrane transport	9.46E-07
6	GO:0015979: photosynthesis	1.05E-06
7	GO:0009773: photosynthetic electron transport in photosystem I	1.30E-06
8	GO:0006810: transport	2.31E-06
9	GO:0006833: water transport	5.45E-06
10	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.76E-06
11	GO:0006000: fructose metabolic process	2.02E-05
12	GO:0080170: hydrogen peroxide transmembrane transport	4.45E-05
13	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.45E-05
14	GO:0015994: chlorophyll metabolic process	7.90E-05
15	GO:0006094: gluconeogenesis	8.09E-05
16	GO:0018298: protein-chromophore linkage	1.50E-04
17	GO:0010218: response to far red light	1.78E-04
18	GO:0009768: photosynthesis, light harvesting in photosystem I	1.84E-04
19	GO:0008152: metabolic process	1.97E-04
20	GO:0009645: response to low light intensity stimulus	3.12E-04
21	GO:0034337: RNA folding	3.57E-04
22	GO:0071588: hydrogen peroxide mediated signaling pathway	3.57E-04
23	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.57E-04
24	GO:0071370: cellular response to gibberellin stimulus	3.57E-04
25	GO:0010480: microsporocyte differentiation	3.57E-04
26	GO:0000481: maturation of 5S rRNA	3.57E-04
27	GO:0033206: meiotic cytokinesis	3.57E-04
28	GO:0010028: xanthophyll cycle	3.57E-04
29	GO:0006002: fructose 6-phosphate metabolic process	4.81E-04
30	GO:0009735: response to cytokinin	4.94E-04
31	GO:0010206: photosystem II repair	5.76E-04
32	GO:0006521: regulation of cellular amino acid metabolic process	7.77E-04
33	GO:0010541: acropetal auxin transport	7.77E-04
34	GO:0090342: regulation of cell aging	7.77E-04
35	GO:0001736: establishment of planar polarity	7.77E-04
36	GO:0016122: xanthophyll metabolic process	7.77E-04
37	GO:0010411: xyloglucan metabolic process	1.06E-03
38	GO:0005986: sucrose biosynthetic process	1.18E-03
39	GO:0009718: anthocyanin-containing compound biosynthetic process	1.18E-03
40	GO:0009723: response to ethylene	1.22E-03
41	GO:0006518: peptide metabolic process	1.26E-03
42	GO:0006013: mannose metabolic process	1.26E-03
43	GO:0010160: formation of animal organ boundary	1.26E-03
44	GO:0080055: low-affinity nitrate transport	1.26E-03
45	GO:0045493: xylan catabolic process	1.26E-03
46	GO:2001295: malonyl-CoA biosynthetic process	1.26E-03
47	GO:0010143: cutin biosynthetic process	1.33E-03
48	GO:0005985: sucrose metabolic process	1.49E-03
49	GO:0009637: response to blue light	1.62E-03
50	GO:0034599: cellular response to oxidative stress	1.72E-03
51	GO:0051513: regulation of monopolar cell growth	1.81E-03
52	GO:0051639: actin filament network formation	1.81E-03
53	GO:0034059: response to anoxia	1.81E-03
54	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.81E-03
55	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.81E-03
56	GO:1901332: negative regulation of lateral root development	1.81E-03
57	GO:0007017: microtubule-based process	2.03E-03
58	GO:0010023: proanthocyanidin biosynthetic process	2.44E-03
59	GO:0051764: actin crosslink formation	2.44E-03
60	GO:0045727: positive regulation of translation	2.44E-03
61	GO:0030104: water homeostasis	2.44E-03
62	GO:0006546: glycine catabolic process	2.44E-03
63	GO:0051205: protein insertion into membrane	2.44E-03
64	GO:0006808: regulation of nitrogen utilization	2.44E-03
65	GO:2000762: regulation of phenylpropanoid metabolic process	3.11E-03
66	GO:0045038: protein import into chloroplast thylakoid membrane	3.11E-03
67	GO:0006461: protein complex assembly	3.11E-03
68	GO:0009958: positive gravitropism	3.64E-03
69	GO:0042549: photosystem II stabilization	3.85E-03
70	GO:0010256: endomembrane system organization	3.85E-03
71	GO:0009913: epidermal cell differentiation	3.85E-03
72	GO:0060918: auxin transport	3.85E-03
73	GO:1902456: regulation of stomatal opening	3.85E-03
74	GO:0000741: karyogamy	3.85E-03
75	GO:0006751: glutathione catabolic process	3.85E-03
76	GO:0000302: response to reactive oxygen species	4.50E-03
77	GO:0009612: response to mechanical stimulus	4.64E-03
78	GO:0006694: steroid biosynthetic process	4.64E-03
79	GO:2000033: regulation of seed dormancy process	4.64E-03
80	GO:0010019: chloroplast-nucleus signaling pathway	4.64E-03
81	GO:0009624: response to nematode	5.14E-03
82	GO:0007165: signal transduction	5.20E-03
83	GO:0009772: photosynthetic electron transport in photosystem II	5.48E-03
84	GO:0048437: floral organ development	5.48E-03
85	GO:0010196: nonphotochemical quenching	5.48E-03
86	GO:0008610: lipid biosynthetic process	6.37E-03
87	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	6.37E-03
88	GO:0032508: DNA duplex unwinding	6.37E-03
89	GO:0045010: actin nucleation	6.37E-03
90	GO:0010492: maintenance of shoot apical meristem identity	6.37E-03
91	GO:0010233: phloem transport	7.30E-03
92	GO:0009657: plastid organization	7.30E-03
93	GO:0032544: plastid translation	7.30E-03
94	GO:0009808: lignin metabolic process	7.30E-03
95	GO:0015995: chlorophyll biosynthetic process	7.67E-03
96	GO:0042744: hydrogen peroxide catabolic process	8.08E-03
97	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.29E-03
98	GO:0048507: meristem development	8.29E-03
99	GO:0071555: cell wall organization	8.66E-03
100	GO:0010311: lateral root formation	8.94E-03
101	GO:0009638: phototropism	9.31E-03
102	GO:0045490: pectin catabolic process	1.03E-02
103	GO:0048829: root cap development	1.04E-02
104	GO:0009867: jasmonic acid mediated signaling pathway	1.08E-02
105	GO:0055085: transmembrane transport	1.14E-02
106	GO:0009684: indoleacetic acid biosynthetic process	1.15E-02
107	GO:0010015: root morphogenesis	1.15E-02
108	GO:0009698: phenylpropanoid metabolic process	1.15E-02
109	GO:1903507: negative regulation of nucleic acid-templated transcription	1.15E-02
110	GO:0009750: response to fructose	1.15E-02
111	GO:0048229: gametophyte development	1.15E-02
112	GO:0048765: root hair cell differentiation	1.15E-02
113	GO:0009739: response to gibberellin	1.19E-02
114	GO:0008361: regulation of cell size	1.27E-02
115	GO:0006790: sulfur compound metabolic process	1.27E-02
116	GO:0005983: starch catabolic process	1.27E-02
117	GO:0016024: CDP-diacylglycerol biosynthetic process	1.27E-02
118	GO:0009767: photosynthetic electron transport chain	1.39E-02
119	GO:0030036: actin cytoskeleton organization	1.39E-02
120	GO:0010075: regulation of meristem growth	1.39E-02
121	GO:0010114: response to red light	1.40E-02
122	GO:0009926: auxin polar transport	1.40E-02
123	GO:0042546: cell wall biogenesis	1.45E-02
124	GO:0010540: basipetal auxin transport	1.51E-02
125	GO:0009934: regulation of meristem structural organization	1.51E-02
126	GO:0009644: response to high light intensity	1.51E-02
127	GO:0019253: reductive pentose-phosphate cycle	1.51E-02
128	GO:0009651: response to salt stress	1.57E-02
129	GO:0010030: positive regulation of seed germination	1.64E-02
130	GO:0046854: phosphatidylinositol phosphorylation	1.64E-02
131	GO:0009734: auxin-activated signaling pathway	1.77E-02
132	GO:0009863: salicylic acid mediated signaling pathway	1.90E-02
133	GO:0010187: negative regulation of seed germination	1.90E-02
134	GO:0051017: actin filament bundle assembly	1.90E-02
135	GO:2000377: regulation of reactive oxygen species metabolic process	1.90E-02
136	GO:0005992: trehalose biosynthetic process	1.90E-02
137	GO:0006857: oligopeptide transport	2.02E-02
138	GO:0048511: rhythmic process	2.18E-02
139	GO:0003333: amino acid transmembrane transport	2.18E-02
140	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.33E-02
141	GO:0035428: hexose transmembrane transport	2.33E-02
142	GO:0080167: response to karrikin	2.36E-02
143	GO:0009414: response to water deprivation	2.43E-02
144	GO:0009740: gibberellic acid mediated signaling pathway	2.53E-02
145	GO:0048443: stamen development	2.63E-02
146	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.79E-02
147	GO:0048653: anther development	2.95E-02
148	GO:0042631: cellular response to water deprivation	2.95E-02
149	GO:0080022: primary root development	2.95E-02
150	GO:0045454: cell redox homeostasis	2.96E-02
151	GO:0009733: response to auxin	3.07E-02
152	GO:0006662: glycerol ether metabolic process	3.11E-02
153	GO:0010197: polar nucleus fusion	3.11E-02
154	GO:0046323: glucose import	3.11E-02
155	GO:0015986: ATP synthesis coupled proton transport	3.27E-02
156	GO:0007018: microtubule-based movement	3.27E-02
157	GO:0042752: regulation of circadian rhythm	3.27E-02
158	GO:0048825: cotyledon development	3.44E-02
159	GO:0071554: cell wall organization or biogenesis	3.61E-02
160	GO:0002229: defense response to oomycetes	3.61E-02
161	GO:0016132: brassinosteroid biosynthetic process	3.61E-02
162	GO:0009737: response to abscisic acid	3.63E-02
163	GO:0032259: methylation	3.64E-02
164	GO:0010583: response to cyclopentenone	3.78E-02
165	GO:0009630: gravitropism	3.78E-02
166	GO:0030163: protein catabolic process	3.96E-02
167	GO:0071281: cellular response to iron ion	3.96E-02
168	GO:0010090: trichome morphogenesis	3.96E-02
169	GO:0009639: response to red or far red light	4.14E-02
170	GO:0009409: response to cold	4.17E-02
171	GO:0009753: response to jasmonic acid	4.18E-02
172	GO:0071805: potassium ion transmembrane transport	4.32E-02
173	GO:0007623: circadian rhythm	4.63E-02
174	GO:0010027: thylakoid membrane organization	4.69E-02
175	GO:0010029: regulation of seed germination	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
5	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
6	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
7	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
8	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
9	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
10	GO:0005528: FK506 binding	1.63E-07
11	GO:0015250: water channel activity	5.57E-06
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.76E-06
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.18E-05
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.90E-05
15	GO:0031409: pigment binding	1.37E-04
16	GO:0004130: cytochrome-c peroxidase activity	1.78E-04
17	GO:0004017: adenylate kinase activity	2.41E-04
18	GO:0050139: nicotinate-N-glucosyltransferase activity	3.57E-04
19	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.57E-04
20	GO:0048038: quinone binding	5.42E-04
21	GO:0016787: hydrolase activity	7.31E-04
22	GO:0004047: aminomethyltransferase activity	7.77E-04
23	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.77E-04
24	GO:0008967: phosphoglycolate phosphatase activity	7.77E-04
25	GO:0047746: chlorophyllase activity	7.77E-04
26	GO:0016868: intramolecular transferase activity, phosphotransferases	7.77E-04
27	GO:0003839: gamma-glutamylcyclotransferase activity	7.77E-04
28	GO:0016168: chlorophyll binding	9.26E-04
29	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.26E-03
30	GO:0050734: hydroxycinnamoyltransferase activity	1.26E-03
31	GO:0004075: biotin carboxylase activity	1.26E-03
32	GO:0019201: nucleotide kinase activity	1.81E-03
33	GO:0010011: auxin binding	2.44E-03
34	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.44E-03
35	GO:0010328: auxin influx transmembrane transporter activity	2.44E-03
36	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.44E-03
37	GO:0009044: xylan 1,4-beta-xylosidase activity	2.44E-03
38	GO:0046556: alpha-L-arabinofuranosidase activity	2.44E-03
39	GO:0030570: pectate lyase activity	2.66E-03
40	GO:0003959: NADPH dehydrogenase activity	3.11E-03
41	GO:0004040: amidase activity	3.11E-03
42	GO:0003989: acetyl-CoA carboxylase activity	3.11E-03
43	GO:0004332: fructose-bisphosphate aldolase activity	3.85E-03
44	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.85E-03
45	GO:0016688: L-ascorbate peroxidase activity	3.85E-03
46	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.85E-03
47	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.50E-03
48	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.64E-03
49	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.64E-03
50	GO:0004602: glutathione peroxidase activity	4.64E-03
51	GO:0004559: alpha-mannosidase activity	4.64E-03
52	GO:0009881: photoreceptor activity	5.48E-03
53	GO:0004620: phospholipase activity	5.48E-03
54	GO:0005200: structural constituent of cytoskeleton	5.80E-03
55	GO:0004564: beta-fructofuranosidase activity	6.37E-03
56	GO:0015078: hydrogen ion transmembrane transporter activity	7.30E-03
57	GO:0016829: lyase activity	7.57E-03
58	GO:0016798: hydrolase activity, acting on glycosyl bonds	7.67E-03
59	GO:0046872: metal ion binding	8.11E-03
60	GO:0000989: transcription factor activity, transcription factor binding	8.29E-03
61	GO:0005096: GTPase activator activity	8.94E-03
62	GO:0004575: sucrose alpha-glucosidase activity	9.31E-03
63	GO:0004805: trehalose-phosphatase activity	1.04E-02
64	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.22E-02
65	GO:0008378: galactosyltransferase activity	1.27E-02
66	GO:0019888: protein phosphatase regulator activity	1.39E-02
67	GO:0004565: beta-galactosidase activity	1.39E-02
68	GO:0010329: auxin efflux transmembrane transporter activity	1.39E-02
69	GO:0031072: heat shock protein binding	1.39E-02
70	GO:0000155: phosphorelay sensor kinase activity	1.39E-02
71	GO:0004185: serine-type carboxypeptidase activity	1.40E-02
72	GO:0051537: 2 iron, 2 sulfur cluster binding	1.51E-02
73	GO:0008266: poly(U) RNA binding	1.51E-02
74	GO:0015293: symporter activity	1.57E-02
75	GO:0008289: lipid binding	1.74E-02
76	GO:0003714: transcription corepressor activity	1.90E-02
77	GO:0015079: potassium ion transmembrane transporter activity	2.04E-02
78	GO:0005515: protein binding	2.07E-02
79	GO:0004176: ATP-dependent peptidase activity	2.18E-02
80	GO:0033612: receptor serine/threonine kinase binding	2.18E-02
81	GO:0004650: polygalacturonase activity	2.46E-02
82	GO:0003756: protein disulfide isomerase activity	2.63E-02
83	GO:0003727: single-stranded RNA binding	2.63E-02
84	GO:0047134: protein-disulfide reductase activity	2.79E-02
85	GO:0005215: transporter activity	2.99E-02
86	GO:0004871: signal transducer activity	3.14E-02
87	GO:0004791: thioredoxin-disulfide reductase activity	3.27E-02
88	GO:0005355: glucose transmembrane transporter activity	3.27E-02
89	GO:0050662: coenzyme binding	3.27E-02
90	GO:0019843: rRNA binding	3.37E-02
91	GO:0004252: serine-type endopeptidase activity	3.73E-02
92	GO:0004518: nuclease activity	3.78E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.96E-02
94	GO:0051015: actin filament binding	3.96E-02
95	GO:0016791: phosphatase activity	4.14E-02
96	GO:0008483: transaminase activity	4.32E-02
97	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.32E-02
98	GO:0016413: O-acetyltransferase activity	4.50E-02
99	GO:0016597: amino acid binding	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	1.44E-35
4	GO:0009535: chloroplast thylakoid membrane	3.14E-26
5	GO:0009507: chloroplast	2.01E-21
6	GO:0009543: chloroplast thylakoid lumen	2.07E-14
7	GO:0009941: chloroplast envelope	1.28E-12
8	GO:0009570: chloroplast stroma	6.15E-12
9	GO:0009579: thylakoid	1.25E-09
10	GO:0030095: chloroplast photosystem II	6.13E-08
11	GO:0031977: thylakoid lumen	8.07E-08
12	GO:0009505: plant-type cell wall	1.36E-07
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.07E-07
14	GO:0009654: photosystem II oxygen evolving complex	8.60E-06
15	GO:0010287: plastoglobule	2.55E-05
16	GO:0019898: extrinsic component of membrane	4.02E-05
17	GO:0016020: membrane	5.98E-05
18	GO:0005618: cell wall	2.25E-04
19	GO:0009533: chloroplast stromal thylakoid	3.12E-04
20	GO:0009782: photosystem I antenna complex	3.57E-04
21	GO:0043674: columella	3.57E-04
22	GO:0009344: nitrite reductase complex [NAD(P)H]	3.57E-04
23	GO:0045298: tubulin complex	5.76E-04
24	GO:0048046: apoplast	1.23E-03
25	GO:0030076: light-harvesting complex	1.49E-03
26	GO:0005773: vacuole	1.55E-03
27	GO:0009531: secondary cell wall	1.81E-03
28	GO:0005775: vacuolar lumen	1.81E-03
29	GO:0032432: actin filament bundle	1.81E-03
30	GO:0042651: thylakoid membrane	2.03E-03
31	GO:0031209: SCAR complex	3.85E-03
32	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	3.85E-03
33	GO:0009522: photosystem I	3.92E-03
34	GO:0009523: photosystem II	4.20E-03
35	GO:0005887: integral component of plasma membrane	4.71E-03
36	GO:0042807: central vacuole	5.48E-03
37	GO:0009986: cell surface	5.48E-03
38	GO:0009538: photosystem I reaction center	6.37E-03
39	GO:0008180: COP9 signalosome	8.29E-03
40	GO:0042644: chloroplast nucleoid	8.29E-03
41	GO:0000159: protein phosphatase type 2A complex	1.15E-02
42	GO:0005884: actin filament	1.15E-02
43	GO:0032040: small-subunit processome	1.27E-02
44	GO:0009508: plastid chromosome	1.39E-02
45	GO:0005874: microtubule	2.26E-02
46	GO:0031969: chloroplast membrane	2.36E-02
47	GO:0016021: integral component of membrane	2.58E-02
48	GO:0005871: kinesin complex	2.79E-02
49	GO:0005886: plasma membrane	3.58E-02
50	GO:0010319: stromule	4.32E-02
51	GO:0009295: nucleoid	4.32E-02
52	GO:0005576: extracellular region	4.51E-02
53	GO:0009506: plasmodesma	4.56E-02
54	GO:0009705: plant-type vacuole membrane	4.63E-02