Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G13460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071242: cellular response to ammonium ion0.00E+00
2GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0006114: glycerol biosynthetic process0.00E+00
6GO:0042493: response to drug0.00E+00
7GO:1905499: trichome papilla formation0.00E+00
8GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.96E-07
9GO:0010115: regulation of abscisic acid biosynthetic process1.10E-05
10GO:0071555: cell wall organization2.36E-05
11GO:0010306: rhamnogalacturonan II biosynthetic process8.00E-05
12GO:0016042: lipid catabolic process1.12E-04
13GO:0042546: cell wall biogenesis1.20E-04
14GO:0010025: wax biosynthetic process2.75E-04
15GO:0010411: xyloglucan metabolic process2.95E-04
16GO:0015995: chlorophyll biosynthetic process2.95E-04
17GO:0006869: lipid transport3.99E-04
18GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway5.00E-04
19GO:0060627: regulation of vesicle-mediated transport5.00E-04
20GO:0070509: calcium ion import5.00E-04
21GO:0007263: nitric oxide mediated signal transduction5.00E-04
22GO:0043266: regulation of potassium ion transport5.00E-04
23GO:0010480: microsporocyte differentiation5.00E-04
24GO:0031338: regulation of vesicle fusion5.00E-04
25GO:0006824: cobalt ion transport5.00E-04
26GO:0080051: cutin transport5.00E-04
27GO:2000021: regulation of ion homeostasis5.00E-04
28GO:0016051: carbohydrate biosynthetic process5.10E-04
29GO:0042335: cuticle development7.10E-04
30GO:0071554: cell wall organization or biogenesis1.02E-03
31GO:0009664: plant-type cell wall organization1.06E-03
32GO:0010289: homogalacturonan biosynthetic process1.08E-03
33GO:0010270: photosystem II oxygen evolving complex assembly1.08E-03
34GO:0010275: NAD(P)H dehydrogenase complex assembly1.08E-03
35GO:0010198: synergid death1.08E-03
36GO:0006695: cholesterol biosynthetic process1.08E-03
37GO:0015908: fatty acid transport1.08E-03
38GO:0045717: negative regulation of fatty acid biosynthetic process1.08E-03
39GO:0010541: acropetal auxin transport1.08E-03
40GO:0034755: iron ion transmembrane transport1.08E-03
41GO:0042761: very long-chain fatty acid biosynthetic process1.10E-03
42GO:0006816: calcium ion transport1.48E-03
43GO:0006415: translational termination1.48E-03
44GO:0090506: axillary shoot meristem initiation1.76E-03
45GO:1902448: positive regulation of shade avoidance1.76E-03
46GO:0046168: glycerol-3-phosphate catabolic process1.76E-03
47GO:0010160: formation of animal organ boundary1.76E-03
48GO:0090630: activation of GTPase activity1.76E-03
49GO:0009826: unidimensional cell growth2.17E-03
50GO:0007231: osmosensory signaling pathway2.56E-03
51GO:0051639: actin filament network formation2.56E-03
52GO:0034059: response to anoxia2.56E-03
53GO:0009650: UV protection2.56E-03
54GO:0080170: hydrogen peroxide transmembrane transport2.56E-03
55GO:0043481: anthocyanin accumulation in tissues in response to UV light2.56E-03
56GO:0006072: glycerol-3-phosphate metabolic process2.56E-03
57GO:0010731: protein glutathionylation2.56E-03
58GO:0006424: glutamyl-tRNA aminoacylation2.56E-03
59GO:0009413: response to flooding2.56E-03
60GO:0010371: regulation of gibberellin biosynthetic process2.56E-03
61GO:0006468: protein phosphorylation2.59E-03
62GO:0006833: water transport2.73E-03
63GO:0005975: carbohydrate metabolic process3.14E-03
64GO:0007017: microtubule-based process3.34E-03
65GO:0051764: actin crosslink formation3.44E-03
66GO:0006183: GTP biosynthetic process3.44E-03
67GO:0033500: carbohydrate homeostasis3.44E-03
68GO:0031122: cytoplasmic microtubule organization3.44E-03
69GO:0000919: cell plate assembly3.44E-03
70GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway3.44E-03
71GO:0010222: stem vascular tissue pattern formation3.44E-03
72GO:0016998: cell wall macromolecule catabolic process3.68E-03
73GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.39E-03
74GO:0016123: xanthophyll biosynthetic process4.41E-03
75GO:0006665: sphingolipid metabolic process4.41E-03
76GO:0000304: response to singlet oxygen4.41E-03
77GO:0032543: mitochondrial translation4.41E-03
78GO:0045487: gibberellin catabolic process4.41E-03
79GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.46E-03
80GO:0060918: auxin transport5.46E-03
81GO:0006796: phosphate-containing compound metabolic process5.46E-03
82GO:0006828: manganese ion transport5.46E-03
83GO:0018258: protein O-linked glycosylation via hydroxyproline5.46E-03
84GO:0006014: D-ribose metabolic process5.46E-03
85GO:0006561: proline biosynthetic process5.46E-03
86GO:0010405: arabinogalactan protein metabolic process5.46E-03
87GO:0006751: glutathione catabolic process5.46E-03
88GO:0000271: polysaccharide biosynthetic process5.60E-03
89GO:0034220: ion transmembrane transport5.60E-03
90GO:0000413: protein peptidyl-prolyl isomerization5.60E-03
91GO:0042538: hyperosmotic salinity response5.72E-03
92GO:0010182: sugar mediated signaling pathway6.04E-03
93GO:0048868: pollen tube development6.04E-03
94GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.60E-03
95GO:0009612: response to mechanical stimulus6.60E-03
96GO:0010067: procambium histogenesis6.60E-03
97GO:0006694: steroid biosynthetic process6.60E-03
98GO:2000033: regulation of seed dormancy process6.60E-03
99GO:0006955: immune response7.80E-03
100GO:0009395: phospholipid catabolic process7.80E-03
101GO:0048437: floral organ development7.80E-03
102GO:0010047: fruit dehiscence7.80E-03
103GO:0009645: response to low light intensity stimulus7.80E-03
104GO:0071669: plant-type cell wall organization or biogenesis7.80E-03
105GO:0010583: response to cyclopentenone7.99E-03
106GO:0009828: plant-type cell wall loosening9.08E-03
107GO:0010439: regulation of glucosinolate biosynthetic process9.09E-03
108GO:0009624: response to nematode9.83E-03
109GO:0009657: plastid organization1.04E-02
110GO:0006526: arginine biosynthetic process1.04E-02
111GO:0032544: plastid translation1.04E-02
112GO:0009808: lignin metabolic process1.04E-02
113GO:0010027: thylakoid membrane organization1.09E-02
114GO:0009051: pentose-phosphate shunt, oxidative branch1.19E-02
115GO:0045337: farnesyl diphosphate biosynthetic process1.19E-02
116GO:0033384: geranyl diphosphate biosynthetic process1.19E-02
117GO:0006754: ATP biosynthetic process1.19E-02
118GO:0009638: phototropism1.34E-02
119GO:0016311: dephosphorylation1.35E-02
120GO:0030244: cellulose biosynthetic process1.42E-02
121GO:0006949: syncytium formation1.49E-02
122GO:0010162: seed dormancy process1.49E-02
123GO:0009870: defense response signaling pathway, resistance gene-dependent1.49E-02
124GO:0019538: protein metabolic process1.49E-02
125GO:0009688: abscisic acid biosynthetic process1.49E-02
126GO:0043069: negative regulation of programmed cell death1.49E-02
127GO:0009407: toxin catabolic process1.57E-02
128GO:0009684: indoleacetic acid biosynthetic process1.65E-02
129GO:0046856: phosphatidylinositol dephosphorylation1.65E-02
130GO:0009750: response to fructose1.65E-02
131GO:0018119: peptidyl-cysteine S-nitrosylation1.65E-02
132GO:0048229: gametophyte development1.65E-02
133GO:0030148: sphingolipid biosynthetic process1.65E-02
134GO:0007165: signal transduction1.70E-02
135GO:0006633: fatty acid biosynthetic process1.75E-02
136GO:0008361: regulation of cell size1.82E-02
137GO:0006820: anion transport1.82E-02
138GO:0030048: actin filament-based movement1.99E-02
139GO:0010588: cotyledon vascular tissue pattern formation1.99E-02
140GO:0006006: glucose metabolic process1.99E-02
141GO:0009718: anthocyanin-containing compound biosynthetic process1.99E-02
142GO:0010075: regulation of meristem growth1.99E-02
143GO:0009725: response to hormone1.99E-02
144GO:0009934: regulation of meristem structural organization2.17E-02
145GO:0010143: cutin biosynthetic process2.17E-02
146GO:0010207: photosystem II assembly2.17E-02
147GO:0010223: secondary shoot formation2.17E-02
148GO:0010540: basipetal auxin transport2.17E-02
149GO:0009414: response to water deprivation2.21E-02
150GO:0009969: xyloglucan biosynthetic process2.36E-02
151GO:0010030: positive regulation of seed germination2.36E-02
152GO:0070588: calcium ion transmembrane transport2.36E-02
153GO:0016310: phosphorylation2.46E-02
154GO:0009636: response to toxic substance2.62E-02
155GO:0051017: actin filament bundle assembly2.74E-02
156GO:0005992: trehalose biosynthetic process2.74E-02
157GO:0031408: oxylipin biosynthetic process3.15E-02
158GO:0035428: hexose transmembrane transport3.35E-02
159GO:0009411: response to UV3.57E-02
160GO:0001944: vasculature development3.57E-02
161GO:0010091: trichome branching3.79E-02
162GO:0048443: stamen development3.79E-02
163GO:0006284: base-excision repair3.79E-02
164GO:0019722: calcium-mediated signaling3.79E-02
165GO:0009306: protein secretion3.79E-02
166GO:0010089: xylem development3.79E-02
167GO:0016117: carotenoid biosynthetic process4.01E-02
168GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.01E-02
169GO:0048653: anther development4.24E-02
170GO:0042631: cellular response to water deprivation4.24E-02
171GO:0042391: regulation of membrane potential4.24E-02
172GO:0010087: phloem or xylem histogenesis4.24E-02
173GO:0009958: positive gravitropism4.47E-02
174GO:0006520: cellular amino acid metabolic process4.47E-02
175GO:0045489: pectin biosynthetic process4.47E-02
176GO:0046323: glucose import4.47E-02
177GO:0009651: response to salt stress4.82E-02
178GO:0019252: starch biosynthetic process4.94E-02
RankGO TermAdjusted P value
1GO:0050614: delta24-sterol reductase activity0.00E+00
2GO:0043136: glycerol-3-phosphatase activity0.00E+00
3GO:0000121: glycerol-1-phosphatase activity0.00E+00
4GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
5GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
6GO:0043864: indoleacetamide hydrolase activity0.00E+00
7GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity0.00E+00
8GO:0004496: mevalonate kinase activity0.00E+00
9GO:0010301: xanthoxin dehydrogenase activity0.00E+00
10GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
11GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
12GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
13GO:0052751: GDP-mannose hydrolase activity0.00E+00
14GO:0016788: hydrolase activity, acting on ester bonds2.03E-07
15GO:0052689: carboxylic ester hydrolase activity7.20E-06
16GO:0016149: translation release factor activity, codon specific8.00E-05
17GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity8.00E-05
18GO:0016851: magnesium chelatase activity8.00E-05
19GO:0016762: xyloglucan:xyloglucosyl transferase activity1.17E-04
20GO:0004565: beta-galactosidase activity1.68E-04
21GO:0016798: hydrolase activity, acting on glycosyl bonds2.95E-04
22GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity5.00E-04
23GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity5.00E-04
24GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.00E-04
25GO:0005227: calcium activated cation channel activity5.00E-04
26GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.00E-04
27GO:0042834: peptidoglycan binding5.00E-04
28GO:0008568: microtubule-severing ATPase activity5.00E-04
29GO:0080132: fatty acid alpha-hydroxylase activity5.00E-04
30GO:0047560: 3-dehydrosphinganine reductase activity5.00E-04
31GO:0015245: fatty acid transporter activity5.00E-04
32GO:0004328: formamidase activity5.00E-04
33GO:0005221: intracellular cyclic nucleotide activated cation channel activity5.00E-04
34GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.36E-04
35GO:0003747: translation release factor activity9.36E-04
36GO:0003938: IMP dehydrogenase activity1.08E-03
37GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.08E-03
38GO:0003839: gamma-glutamylcyclotransferase activity1.08E-03
39GO:0004674: protein serine/threonine kinase activity1.18E-03
40GO:0016787: hydrolase activity1.18E-03
41GO:0016413: O-acetyltransferase activity1.51E-03
42GO:0008378: galactosyltransferase activity1.70E-03
43GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.76E-03
44GO:0045174: glutathione dehydrogenase (ascorbate) activity1.76E-03
45GO:0030267: glyoxylate reductase (NADP) activity1.76E-03
46GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.76E-03
47GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.76E-03
48GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.76E-03
49GO:0005262: calcium channel activity1.93E-03
50GO:0005096: GTPase activator activity2.43E-03
51GO:0001872: (1->3)-beta-D-glucan binding2.56E-03
52GO:0004445: inositol-polyphosphate 5-phosphatase activity2.56E-03
53GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.56E-03
54GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.41E-03
55GO:0004345: glucose-6-phosphate dehydrogenase activity3.44E-03
56GO:0016836: hydro-lyase activity3.44E-03
57GO:0004045: aminoacyl-tRNA hydrolase activity3.44E-03
58GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.44E-03
59GO:0046527: glucosyltransferase activity3.44E-03
60GO:0052793: pectin acetylesterase activity3.44E-03
61GO:0008289: lipid binding3.66E-03
62GO:0033612: receptor serine/threonine kinase binding3.68E-03
63GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.02E-03
64GO:0004364: glutathione transferase activity4.06E-03
65GO:0030570: pectate lyase activity4.39E-03
66GO:0008725: DNA-3-methyladenine glycosylase activity4.41E-03
67GO:0008381: mechanically-gated ion channel activity4.41E-03
68GO:0009922: fatty acid elongase activity4.41E-03
69GO:0017137: Rab GTPase binding4.41E-03
70GO:0004040: amidase activity4.41E-03
71GO:0004871: signal transducer activity5.05E-03
72GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.21E-03
73GO:0080030: methyl indole-3-acetate esterase activity5.46E-03
74GO:1990714: hydroxyproline O-galactosyltransferase activity5.46E-03
75GO:0004629: phospholipase C activity5.46E-03
76GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity5.46E-03
77GO:0008200: ion channel inhibitor activity5.46E-03
78GO:0051920: peroxiredoxin activity6.60E-03
79GO:0051753: mannan synthase activity6.60E-03
80GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.60E-03
81GO:0004435: phosphatidylinositol phospholipase C activity6.60E-03
82GO:0004747: ribokinase activity6.60E-03
83GO:0005261: cation channel activity6.60E-03
84GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.60E-03
85GO:0005242: inward rectifier potassium channel activity6.60E-03
86GO:0019901: protein kinase binding6.98E-03
87GO:0004427: inorganic diphosphatase activity7.80E-03
88GO:0043295: glutathione binding7.80E-03
89GO:0016209: antioxidant activity9.09E-03
90GO:0004869: cysteine-type endopeptidase inhibitor activity9.09E-03
91GO:0008865: fructokinase activity9.09E-03
92GO:0004714: transmembrane receptor protein tyrosine kinase activity9.09E-03
93GO:0005200: structural constituent of cytoskeleton9.65E-03
94GO:0005524: ATP binding9.92E-03
95GO:0015250: water channel activity1.09E-02
96GO:0004337: geranyltranstransferase activity1.19E-02
97GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism1.19E-02
98GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.19E-02
99GO:0016758: transferase activity, transferring hexosyl groups1.27E-02
100GO:0005516: calmodulin binding1.31E-02
101GO:0005381: iron ion transmembrane transporter activity1.34E-02
102GO:0005384: manganese ion transmembrane transporter activity1.34E-02
103GO:0047617: acyl-CoA hydrolase activity1.34E-02
104GO:0016829: lyase activity1.45E-02
105GO:0015020: glucuronosyltransferase activity1.49E-02
106GO:0004805: trehalose-phosphatase activity1.49E-02
107GO:0047372: acylglycerol lipase activity1.65E-02
108GO:0004161: dimethylallyltranstransferase activity1.65E-02
109GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.82E-02
110GO:0003993: acid phosphatase activity1.89E-02
111GO:0004672: protein kinase activity1.94E-02
112GO:0016301: kinase activity1.95E-02
113GO:0004022: alcohol dehydrogenase (NAD) activity1.99E-02
114GO:0010329: auxin efflux transmembrane transporter activity1.99E-02
115GO:0015095: magnesium ion transmembrane transporter activity1.99E-02
116GO:0003774: motor activity2.17E-02
117GO:0003924: GTPase activity2.27E-02
118GO:0030553: cGMP binding2.36E-02
119GO:0030552: cAMP binding2.36E-02
120GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.67E-02
121GO:0004857: enzyme inhibitor activity2.74E-02
122GO:0005528: FK506 binding2.74E-02
123GO:0051287: NAD binding2.83E-02
124GO:0043424: protein histidine kinase binding2.94E-02
125GO:0005216: ion channel activity2.94E-02
126GO:0008324: cation transmembrane transporter activity2.94E-02
127GO:0019706: protein-cysteine S-palmitoyltransferase activity3.15E-02
128GO:0016760: cellulose synthase (UDP-forming) activity3.57E-02
129GO:0016491: oxidoreductase activity3.84E-02
130GO:0005102: receptor binding4.01E-02
131GO:0030551: cyclic nucleotide binding4.24E-02
132GO:0003713: transcription coactivator activity4.47E-02
133GO:0005355: glucose transmembrane transporter activity4.71E-02
134GO:0004872: receptor activity4.94E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.12E-12
2GO:0031225: anchored component of membrane1.60E-07
3GO:0046658: anchored component of plasma membrane1.05E-06
4GO:0009505: plant-type cell wall2.75E-06
5GO:0031977: thylakoid lumen8.10E-06
6GO:0009543: chloroplast thylakoid lumen1.28E-05
7GO:0005576: extracellular region2.66E-05
8GO:0010007: magnesium chelatase complex3.74E-05
9GO:0009534: chloroplast thylakoid6.46E-05
10GO:0005618: cell wall7.32E-05
11GO:0009570: chloroplast stroma1.05E-04
12GO:0048046: apoplast1.49E-04
13GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex5.00E-04
14GO:0009923: fatty acid elongase complex5.00E-04
15GO:0016021: integral component of membrane9.33E-04
16GO:0009897: external side of plasma membrane1.76E-03
17GO:0032432: actin filament bundle2.56E-03
18GO:0009331: glycerol-3-phosphate dehydrogenase complex2.56E-03
19GO:0015630: microtubule cytoskeleton2.56E-03
20GO:0009531: secondary cell wall2.56E-03
21GO:0005875: microtubule associated complex2.73E-03
22GO:0009579: thylakoid2.74E-03
23GO:0009507: chloroplast4.52E-03
24GO:0016020: membrane4.71E-03
25GO:0000139: Golgi membrane6.29E-03
26GO:0005773: vacuole7.51E-03
27GO:0009533: chloroplast stromal thylakoid7.80E-03
28GO:0009535: chloroplast thylakoid membrane8.41E-03
29GO:0045298: tubulin complex1.19E-02
30GO:0005874: microtubule1.20E-02
31GO:0016459: myosin complex1.49E-02
32GO:0009506: plasmodesma1.63E-02
33GO:0005884: actin filament1.65E-02
34GO:0030095: chloroplast photosystem II2.17E-02
35GO:0030659: cytoplasmic vesicle membrane2.17E-02
36GO:0005794: Golgi apparatus2.43E-02
37GO:0043234: protein complex2.55E-02
38GO:0009654: photosystem II oxygen evolving complex2.94E-02
39GO:0005887: integral component of plasma membrane3.56E-02
40GO:0031969: chloroplast membrane4.44E-02
41GO:0005768: endosome4.92E-02
42GO:0019898: extrinsic component of membrane4.94E-02
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Gene type



Gene DE type