co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G13090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900000: regulation of anthocyanin catabolic process	0.00E+00
2	GO:0015822: ornithine transport	0.00E+00
3	GO:0090706: specification of plant organ position	0.00E+00
4	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
8	GO:0051503: adenine nucleotide transport	0.00E+00
9	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.43E-07
10	GO:0000066: mitochondrial ornithine transport	1.30E-04
11	GO:0010450: inflorescence meristem growth	1.30E-04
12	GO:0000476: maturation of 4.5S rRNA	1.30E-04
13	GO:0051180: vitamin transport	1.30E-04
14	GO:0000967: rRNA 5'-end processing	1.30E-04
15	GO:0030974: thiamine pyrophosphate transport	1.30E-04
16	GO:0042547: cell wall modification involved in multidimensional cell growth	1.30E-04
17	GO:0006094: gluconeogenesis	2.89E-04
18	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	2.99E-04
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.99E-04
20	GO:0034470: ncRNA processing	2.99E-04
21	GO:0015893: drug transport	2.99E-04
22	GO:0034755: iron ion transmembrane transport	2.99E-04
23	GO:0016560: protein import into peroxisome matrix, docking	2.99E-04
24	GO:0006839: mitochondrial transport	3.08E-04
25	GO:0005977: glycogen metabolic process	4.92E-04
26	GO:0045165: cell fate commitment	4.92E-04
27	GO:0006011: UDP-glucose metabolic process	4.92E-04
28	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	4.92E-04
29	GO:0006000: fructose metabolic process	4.92E-04
30	GO:0043617: cellular response to sucrose starvation	4.92E-04
31	GO:1902476: chloride transmembrane transport	7.04E-04
32	GO:0046902: regulation of mitochondrial membrane permeability	7.04E-04
33	GO:0006515: misfolded or incompletely synthesized protein catabolic process	7.04E-04
34	GO:0010087: phloem or xylem histogenesis	8.26E-04
35	GO:0009741: response to brassinosteroid	8.87E-04
36	GO:0006810: transport	1.02E-03
37	GO:1902183: regulation of shoot apical meristem development	1.18E-03
38	GO:0010158: abaxial cell fate specification	1.18E-03
39	GO:0006564: L-serine biosynthetic process	1.18E-03
40	GO:0000470: maturation of LSU-rRNA	1.45E-03
41	GO:0016554: cytidine to uridine editing	1.45E-03
42	GO:0000741: karyogamy	1.45E-03
43	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.45E-03
44	GO:0010942: positive regulation of cell death	1.45E-03
45	GO:0007623: circadian rhythm	1.63E-03
46	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.73E-03
47	GO:0006821: chloride transport	2.04E-03
48	GO:0051510: regulation of unidimensional cell growth	2.04E-03
49	GO:0048527: lateral root development	2.32E-03
50	GO:0052543: callose deposition in cell wall	2.36E-03
51	GO:0006402: mRNA catabolic process	2.36E-03
52	GO:0009690: cytokinin metabolic process	2.36E-03
53	GO:0010078: maintenance of root meristem identity	2.36E-03
54	GO:0043562: cellular response to nitrogen levels	2.69E-03
55	GO:0010093: specification of floral organ identity	2.69E-03
56	GO:0006002: fructose 6-phosphate metabolic process	2.69E-03
57	GO:0006098: pentose-phosphate shunt	3.04E-03
58	GO:0009821: alkaloid biosynthetic process	3.04E-03
59	GO:0010206: photosystem II repair	3.04E-03
60	GO:2000024: regulation of leaf development	3.04E-03
61	GO:0000373: Group II intron splicing	3.04E-03
62	GO:0009723: response to ethylene	3.40E-03
63	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	3.41E-03
64	GO:0006779: porphyrin-containing compound biosynthetic process	3.41E-03
65	GO:1900865: chloroplast RNA modification	3.41E-03
66	GO:0006782: protoporphyrinogen IX biosynthetic process	3.79E-03
67	GO:0005975: carbohydrate metabolic process	4.12E-03
68	GO:0009684: indoleacetic acid biosynthetic process	4.18E-03
69	GO:0009773: photosynthetic electron transport in photosystem I	4.18E-03
70	GO:0006879: cellular iron ion homeostasis	4.18E-03
71	GO:0009750: response to fructose	4.18E-03
72	GO:0016485: protein processing	4.18E-03
73	GO:0015979: photosynthesis	4.38E-03
74	GO:0005983: starch catabolic process	4.58E-03
75	GO:0015706: nitrate transport	4.58E-03
76	GO:0009767: photosynthetic electron transport chain	5.00E-03
77	GO:0005986: sucrose biosynthetic process	5.00E-03
78	GO:0010588: cotyledon vascular tissue pattern formation	5.00E-03
79	GO:2000028: regulation of photoperiodism, flowering	5.00E-03
80	GO:0006096: glycolytic process	5.17E-03
81	GO:0048367: shoot system development	5.34E-03
82	GO:0048316: seed development	5.34E-03
83	GO:0048768: root hair cell tip growth	5.44E-03
84	GO:0048467: gynoecium development	5.44E-03
85	GO:0009933: meristem structural organization	5.44E-03
86	GO:0010207: photosystem II assembly	5.44E-03
87	GO:0010167: response to nitrate	5.88E-03
88	GO:0090351: seedling development	5.88E-03
89	GO:0006629: lipid metabolic process	6.08E-03
90	GO:0006636: unsaturated fatty acid biosynthetic process	6.34E-03
91	GO:0009742: brassinosteroid mediated signaling pathway	6.59E-03
92	GO:0009944: polarity specification of adaxial/abaxial axis	6.81E-03
93	GO:0006418: tRNA aminoacylation for protein translation	7.30E-03
94	GO:0019915: lipid storage	7.79E-03
95	GO:0006730: one-carbon metabolic process	8.30E-03
96	GO:0009814: defense response, incompatible interaction	8.30E-03
97	GO:0030433: ubiquitin-dependent ERAD pathway	8.30E-03
98	GO:0040007: growth	8.82E-03
99	GO:0042631: cellular response to water deprivation	1.04E-02
100	GO:0080022: primary root development	1.04E-02
101	GO:0009451: RNA modification	1.10E-02
102	GO:0010154: fruit development	1.10E-02
103	GO:0009958: positive gravitropism	1.10E-02
104	GO:0010197: polar nucleus fusion	1.10E-02
105	GO:0009646: response to absence of light	1.16E-02
106	GO:0009851: auxin biosynthetic process	1.22E-02
107	GO:0009791: post-embryonic development	1.22E-02
108	GO:0048825: cotyledon development	1.22E-02
109	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.28E-02
110	GO:0016032: viral process	1.34E-02
111	GO:0030163: protein catabolic process	1.40E-02
112	GO:0071805: potassium ion transmembrane transport	1.53E-02
113	GO:0009826: unidimensional cell growth	1.61E-02
114	GO:0001666: response to hypoxia	1.66E-02
115	GO:0009658: chloroplast organization	1.67E-02
116	GO:0055085: transmembrane transport	1.70E-02
117	GO:0042128: nitrate assimilation	1.79E-02
118	GO:0015995: chlorophyll biosynthetic process	1.86E-02
119	GO:0010411: xyloglucan metabolic process	1.86E-02
120	GO:0016311: dephosphorylation	1.93E-02
121	GO:0048481: plant ovule development	2.00E-02
122	GO:0018298: protein-chromophore linkage	2.00E-02
123	GO:0046777: protein autophosphorylation	2.22E-02
124	GO:0009853: photorespiration	2.37E-02
125	GO:0009744: response to sucrose	2.84E-02
126	GO:0009640: photomorphogenesis	2.84E-02
127	GO:0000209: protein polyubiquitination	2.92E-02
128	GO:0042546: cell wall biogenesis	2.92E-02
129	GO:0009644: response to high light intensity	3.00E-02
130	GO:0006855: drug transmembrane transport	3.17E-02
131	GO:0048364: root development	3.19E-02
132	GO:0006364: rRNA processing	3.51E-02
133	GO:0009585: red, far-red light phototransduction	3.51E-02
134	GO:0006813: potassium ion transport	3.51E-02
135	GO:0051603: proteolysis involved in cellular protein catabolic process	3.60E-02
136	GO:0006857: oligopeptide transport	3.68E-02
137	GO:0009909: regulation of flower development	3.77E-02
138	GO:0009626: plant-type hypersensitive response	4.14E-02
139	GO:0009740: gibberellic acid mediated signaling pathway	4.32E-02
140	GO:0009651: response to salt stress	4.80E-02
141	GO:0009908: flower development	4.88E-02
142	GO:0009735: response to cytokinin	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	1.30E-04
5	GO:0090422: thiamine pyrophosphate transporter activity	1.30E-04
6	GO:0009671: nitrate:proton symporter activity	1.30E-04
7	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	1.30E-04
8	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.99E-04
9	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	2.99E-04
10	GO:0004617: phosphoglycerate dehydrogenase activity	2.99E-04
11	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.99E-04
12	GO:0000064: L-ornithine transmembrane transporter activity	2.99E-04
13	GO:0015929: hexosaminidase activity	2.99E-04
14	GO:0004563: beta-N-acetylhexosaminidase activity	2.99E-04
15	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	2.99E-04
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.42E-04
17	GO:0005528: FK506 binding	4.55E-04
18	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	4.92E-04
19	GO:0002161: aminoacyl-tRNA editing activity	4.92E-04
20	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	4.92E-04
21	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	9.34E-04
22	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	9.34E-04
23	GO:0005253: anion channel activity	9.34E-04
24	GO:0019843: rRNA binding	1.09E-03
25	GO:0008374: O-acyltransferase activity	1.18E-03
26	GO:0016846: carbon-sulfur lyase activity	1.18E-03
27	GO:0005471: ATP:ADP antiporter activity	1.18E-03
28	GO:0005247: voltage-gated chloride channel activity	1.45E-03
29	GO:0004332: fructose-bisphosphate aldolase activity	1.45E-03
30	GO:0042578: phosphoric ester hydrolase activity	1.45E-03
31	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.73E-03
32	GO:0008236: serine-type peptidase activity	1.91E-03
33	GO:0016787: hydrolase activity	2.15E-03
34	GO:0016844: strictosidine synthase activity	3.41E-03
35	GO:0015112: nitrate transmembrane transporter activity	3.41E-03
36	GO:0005381: iron ion transmembrane transporter activity	3.41E-03
37	GO:0003723: RNA binding	3.56E-03
38	GO:0000049: tRNA binding	4.58E-03
39	GO:0004565: beta-galactosidase activity	5.00E-03
40	GO:0008081: phosphoric diester hydrolase activity	5.00E-03
41	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.44E-03
42	GO:0004519: endonuclease activity	6.76E-03
43	GO:0015079: potassium ion transmembrane transporter activity	7.30E-03
44	GO:0004176: ATP-dependent peptidase activity	7.79E-03
45	GO:0004252: serine-type endopeptidase activity	8.64E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	8.82E-03
47	GO:0030570: pectate lyase activity	8.82E-03
48	GO:0005215: transporter activity	9.32E-03
49	GO:0004812: aminoacyl-tRNA ligase activity	9.90E-03
50	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.28E-02
51	GO:0004518: nuclease activity	1.34E-02
52	GO:0016597: amino acid binding	1.59E-02
53	GO:0016168: chlorophyll binding	1.73E-02
54	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.86E-02
55	GO:0015238: drug transmembrane transporter activity	2.07E-02
56	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.52E-02
57	GO:0004185: serine-type carboxypeptidase activity	2.84E-02
58	GO:0015293: symporter activity	3.08E-02
59	GO:0051287: NAD binding	3.25E-02
60	GO:0016298: lipase activity	3.60E-02
61	GO:0003777: microtubule motor activity	3.77E-02
62	GO:0031625: ubiquitin protein ligase binding	3.77E-02
63	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.23E-02
64	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0043233: organelle lumen	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	5.57E-08
4	GO:0009507: chloroplast	3.71E-07
5	GO:0009543: chloroplast thylakoid lumen	4.20E-07
6	GO:0009570: chloroplast stroma	6.34E-05
7	GO:0009344: nitrite reductase complex [NAD(P)H]	1.30E-04
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.31E-04
9	GO:0005782: peroxisomal matrix	4.92E-04
10	GO:0005743: mitochondrial inner membrane	1.03E-03
11	GO:0034707: chloride channel complex	1.45E-03
12	GO:0030529: intracellular ribonucleoprotein complex	1.55E-03
13	GO:0009533: chloroplast stromal thylakoid	2.04E-03
14	GO:0009534: chloroplast thylakoid	3.65E-03
15	GO:0019013: viral nucleocapsid	5.00E-03
16	GO:0030095: chloroplast photosystem II	5.44E-03
17	GO:0000312: plastid small ribosomal subunit	5.44E-03
18	GO:0043231: intracellular membrane-bounded organelle	6.88E-03
19	GO:0009654: photosystem II oxygen evolving complex	7.30E-03
20	GO:0005759: mitochondrial matrix	9.79E-03
21	GO:0009941: chloroplast envelope	1.00E-02
22	GO:0009522: photosystem I	1.16E-02
23	GO:0019898: extrinsic component of membrane	1.22E-02
24	GO:0009523: photosystem II	1.22E-02
25	GO:0046658: anchored component of plasma membrane	1.43E-02
26	GO:0009579: thylakoid	1.58E-02
27	GO:0031977: thylakoid lumen	2.68E-02
28	GO:0005773: vacuole	3.53E-02