Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G12390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009991: response to extracellular stimulus0.00E+00
2GO:1900103: positive regulation of endoplasmic reticulum unfolded protein response0.00E+00
3GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
4GO:0036258: multivesicular body assembly0.00E+00
5GO:0010200: response to chitin1.49E-05
6GO:0009816: defense response to bacterium, incompatible interaction4.11E-05
7GO:0030968: endoplasmic reticulum unfolded protein response4.22E-05
8GO:0009968: negative regulation of signal transduction7.07E-05
9GO:0043547: positive regulation of GTPase activity7.07E-05
10GO:0051245: negative regulation of cellular defense response7.07E-05
11GO:0010941: regulation of cell death7.07E-05
12GO:1902265: abscisic acid homeostasis7.07E-05
13GO:0034214: protein hexamerization7.07E-05
14GO:0071806: protein transmembrane transport7.07E-05
15GO:0042742: defense response to bacterium7.40E-05
16GO:0046740: transport of virus in host, cell to cell1.70E-04
17GO:0015914: phospholipid transport1.70E-04
18GO:0080185: effector dependent induction by symbiont of host immune response1.70E-04
19GO:0071712: ER-associated misfolded protein catabolic process1.70E-04
20GO:0046777: protein autophosphorylation1.95E-04
21GO:0009814: defense response, incompatible interaction2.70E-04
22GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway2.86E-04
23GO:0006556: S-adenosylmethionine biosynthetic process2.86E-04
24GO:0071492: cellular response to UV-A2.86E-04
25GO:0010071: root meristem specification4.15E-04
26GO:0070301: cellular response to hydrogen peroxide4.15E-04
27GO:0072583: clathrin-dependent endocytosis4.15E-04
28GO:0006612: protein targeting to membrane4.15E-04
29GO:0070676: intralumenal vesicle formation4.15E-04
30GO:0009749: response to glucose4.67E-04
31GO:0009687: abscisic acid metabolic process5.53E-04
32GO:0060548: negative regulation of cell death5.53E-04
33GO:0071486: cellular response to high light intensity5.53E-04
34GO:0009765: photosynthesis, light harvesting5.53E-04
35GO:0010363: regulation of plant-type hypersensitive response5.53E-04
36GO:0010508: positive regulation of autophagy5.53E-04
37GO:0006470: protein dephosphorylation6.99E-04
38GO:0070814: hydrogen sulfide biosynthetic process8.57E-04
39GO:0048317: seed morphogenesis8.57E-04
40GO:1900425: negative regulation of defense response to bacterium8.57E-04
41GO:0009817: defense response to fungus, incompatible interaction9.18E-04
42GO:0010555: response to mannitol1.02E-03
43GO:2000067: regulation of root morphogenesis1.02E-03
44GO:0080060: integument development1.02E-03
45GO:0009867: jasmonic acid mediated signaling pathway1.15E-03
46GO:0010044: response to aluminum ion1.19E-03
47GO:0045995: regulation of embryonic development1.19E-03
48GO:0070370: cellular heat acclimation1.19E-03
49GO:0015937: coenzyme A biosynthetic process1.19E-03
50GO:0010492: maintenance of shoot apical meristem identity1.37E-03
51GO:0009819: drought recovery1.37E-03
52GO:0030162: regulation of proteolysis1.37E-03
53GO:0010078: maintenance of root meristem identity1.37E-03
54GO:0007186: G-protein coupled receptor signaling pathway1.56E-03
55GO:0010120: camalexin biosynthetic process1.56E-03
56GO:0006468: protein phosphorylation1.59E-03
57GO:0006886: intracellular protein transport1.72E-03
58GO:0009056: catabolic process1.76E-03
59GO:0090333: regulation of stomatal closure1.76E-03
60GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.77E-03
61GO:2000280: regulation of root development1.97E-03
62GO:0008202: steroid metabolic process1.97E-03
63GO:0043069: negative regulation of programmed cell death2.19E-03
64GO:0019538: protein metabolic process2.19E-03
65GO:0000103: sulfate assimilation2.19E-03
66GO:0072593: reactive oxygen species metabolic process2.41E-03
67GO:0009750: response to fructose2.41E-03
68GO:0071365: cellular response to auxin stimulus2.64E-03
69GO:0006626: protein targeting to mitochondrion2.88E-03
70GO:0009887: animal organ morphogenesis3.12E-03
71GO:0034605: cellular response to heat3.12E-03
72GO:0050832: defense response to fungus3.14E-03
73GO:0010030: positive regulation of seed germination3.37E-03
74GO:0010053: root epidermal cell differentiation3.37E-03
75GO:0009845: seed germination3.74E-03
76GO:0009863: salicylic acid mediated signaling pathway3.89E-03
77GO:0030150: protein import into mitochondrial matrix3.89E-03
78GO:0006825: copper ion transport4.17E-03
79GO:0006874: cellular calcium ion homeostasis4.17E-03
80GO:0048278: vesicle docking4.44E-03
81GO:0031348: negative regulation of defense response4.73E-03
82GO:0006730: one-carbon metabolic process4.73E-03
83GO:2000022: regulation of jasmonic acid mediated signaling pathway4.73E-03
84GO:0009693: ethylene biosynthetic process5.02E-03
85GO:0071215: cellular response to abscisic acid stimulus5.02E-03
86GO:0042127: regulation of cell proliferation5.32E-03
87GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process5.33E-03
88GO:0070417: cellular response to cold5.62E-03
89GO:0009617: response to bacterium5.68E-03
90GO:0042631: cellular response to water deprivation5.93E-03
91GO:0080022: primary root development5.93E-03
92GO:0010182: sugar mediated signaling pathway6.24E-03
93GO:0010154: fruit development6.24E-03
94GO:0061025: membrane fusion6.56E-03
95GO:0055072: iron ion homeostasis6.89E-03
96GO:0006623: protein targeting to vacuole6.89E-03
97GO:0002229: defense response to oomycetes7.22E-03
98GO:0006891: intra-Golgi vesicle-mediated transport7.22E-03
99GO:0071281: cellular response to iron ion7.90E-03
100GO:0009723: response to ethylene8.51E-03
101GO:0071805: potassium ion transmembrane transport8.61E-03
102GO:0051607: defense response to virus8.97E-03
103GO:0009788: negative regulation of abscisic acid-activated signaling pathway9.71E-03
104GO:0009627: systemic acquired resistance1.01E-02
105GO:0006906: vesicle fusion1.01E-02
106GO:0006950: response to stress1.05E-02
107GO:0048573: photoperiodism, flowering1.05E-02
108GO:0048527: lateral root development1.25E-02
109GO:0010119: regulation of stomatal movement1.25E-02
110GO:0015031: protein transport1.48E-02
111GO:0006887: exocytosis1.50E-02
112GO:0009744: response to sucrose1.59E-02
113GO:0009409: response to cold1.60E-02
114GO:0009873: ethylene-activated signaling pathway1.75E-02
115GO:0031347: regulation of defense response1.82E-02
116GO:0006813: potassium ion transport1.97E-02
117GO:0009626: plant-type hypersensitive response2.32E-02
118GO:0035556: intracellular signal transduction2.54E-02
119GO:0007275: multicellular organism development2.56E-02
120GO:0006396: RNA processing2.58E-02
121GO:0007165: signal transduction2.75E-02
122GO:0009737: response to abscisic acid2.83E-02
123GO:0007166: cell surface receptor signaling pathway4.10E-02
124GO:0010468: regulation of gene expression4.23E-02
125GO:0008380: RNA splicing4.23E-02
126GO:0009414: response to water deprivation4.72E-02
RankGO TermAdjusted P value
1GO:0032050: clathrin heavy chain binding7.07E-05
2GO:1901149: salicylic acid binding7.07E-05
3GO:0004713: protein tyrosine kinase activity7.72E-05
4GO:0005524: ATP binding1.32E-04
5GO:0044390: ubiquitin-like protein conjugating enzyme binding1.70E-04
6GO:0004594: pantothenate kinase activity1.70E-04
7GO:0010296: prenylcysteine methylesterase activity1.70E-04
8GO:0004871: signal transducer activity2.54E-04
9GO:0004781: sulfate adenylyltransferase (ATP) activity2.86E-04
10GO:0004478: methionine adenosyltransferase activity2.86E-04
11GO:0052692: raffinose alpha-galactosidase activity2.86E-04
12GO:0001664: G-protein coupled receptor binding2.86E-04
13GO:0019829: cation-transporting ATPase activity2.86E-04
14GO:0004557: alpha-galactosidase activity2.86E-04
15GO:0031683: G-protein beta/gamma-subunit complex binding2.86E-04
16GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.86E-04
17GO:0016301: kinase activity3.25E-04
18GO:0004301: epoxide hydrolase activity5.53E-04
19GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway5.53E-04
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.53E-04
21GO:0004930: G-protein coupled receptor activity5.53E-04
22GO:0004674: protein serine/threonine kinase activity5.93E-04
23GO:0010294: abscisic acid glucosyltransferase activity7.00E-04
24GO:0004040: amidase activity7.00E-04
25GO:0004712: protein serine/threonine/tyrosine kinase activity1.25E-03
26GO:0008142: oxysterol binding1.56E-03
27GO:0005375: copper ion transmembrane transporter activity1.56E-03
28GO:0004722: protein serine/threonine phosphatase activity1.86E-03
29GO:0005515: protein binding2.52E-03
30GO:0004521: endoribonuclease activity2.64E-03
31GO:0015266: protein channel activity2.88E-03
32GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.88E-03
33GO:0005217: intracellular ligand-gated ion channel activity3.37E-03
34GO:0004970: ionotropic glutamate receptor activity3.37E-03
35GO:0016887: ATPase activity3.75E-03
36GO:0043130: ubiquitin binding3.89E-03
37GO:0004672: protein kinase activity4.12E-03
38GO:0043424: protein histidine kinase binding4.17E-03
39GO:0015079: potassium ion transmembrane transporter activity4.17E-03
40GO:0033612: receptor serine/threonine kinase binding4.44E-03
41GO:0008194: UDP-glycosyltransferase activity5.33E-03
42GO:0010181: FMN binding6.56E-03
43GO:0016168: chlorophyll binding9.71E-03
44GO:0030247: polysaccharide binding1.05E-02
45GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.13E-02
46GO:0042803: protein homodimerization activity1.15E-02
47GO:0005096: GTPase activator activity1.17E-02
48GO:0003924: GTPase activity1.35E-02
49GO:0000149: SNARE binding1.41E-02
50GO:0005484: SNAP receptor activity1.59E-02
51GO:0043621: protein self-association1.68E-02
52GO:0035091: phosphatidylinositol binding1.68E-02
53GO:0005198: structural molecule activity1.73E-02
54GO:0046872: metal ion binding1.82E-02
55GO:0031625: ubiquitin protein ligase binding2.11E-02
56GO:0080043: quercetin 3-O-glucosyltransferase activity2.37E-02
57GO:0080044: quercetin 7-O-glucosyltransferase activity2.37E-02
58GO:0016746: transferase activity, transferring acyl groups2.58E-02
59GO:0030246: carbohydrate binding3.23E-02
60GO:0008565: protein transporter activity3.37E-02
61GO:0044212: transcription regulatory region DNA binding4.84E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.64E-05
2GO:0031902: late endosome membrane1.06E-04
3GO:0042406: extrinsic component of endoplasmic reticulum membrane2.86E-04
4GO:0036513: Derlin-1 retrotranslocation complex4.15E-04
5GO:0016021: integral component of membrane5.22E-04
6GO:0000813: ESCRT I complex7.00E-04
7GO:0000164: protein phosphatase type 1 complex7.00E-04
8GO:0031305: integral component of mitochondrial inner membrane1.37E-03
9GO:0017119: Golgi transport complex2.19E-03
10GO:0030125: clathrin vesicle coat2.19E-03
11GO:0005834: heterotrimeric G-protein complex2.46E-03
12GO:0005795: Golgi stack3.37E-03
13GO:0000139: Golgi membrane3.64E-03
14GO:0005789: endoplasmic reticulum membrane4.37E-03
15GO:0005744: mitochondrial inner membrane presequence translocase complex5.32E-03
16GO:0009523: photosystem II6.89E-03
17GO:0005802: trans-Golgi network8.10E-03
18GO:0030529: intracellular ribonucleoprotein complex9.34E-03
19GO:0005768: endosome9.54E-03
20GO:0019005: SCF ubiquitin ligase complex1.13E-02
21GO:0031201: SNARE complex1.50E-02
22GO:0010008: endosome membrane2.26E-02
23GO:0012505: endomembrane system2.47E-02
24GO:0005773: vacuole2.84E-02
25GO:0009506: plasmodesma4.07E-02
26GO:0005783: endoplasmic reticulum4.23E-02
27GO:0046658: anchored component of plasma membrane4.55E-02
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Gene type



Gene DE type