co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G11450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042820: vitamin B6 catabolic process	0.00E+00
2	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0006642: triglyceride mobilization	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0042407: cristae formation	0.00E+00
9	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
10	GO:0006223: uracil salvage	0.00E+00
11	GO:0016553: base conversion or substitution editing	0.00E+00
12	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
13	GO:0009658: chloroplast organization	2.12E-12
14	GO:0015995: chlorophyll biosynthetic process	3.18E-11
15	GO:0006353: DNA-templated transcription, termination	4.19E-08
16	GO:0006782: protoporphyrinogen IX biosynthetic process	2.59E-07
17	GO:0010027: thylakoid membrane organization	1.30E-06
18	GO:1901259: chloroplast rRNA processing	1.91E-06
19	GO:0018026: peptidyl-lysine monomethylation	2.75E-06
20	GO:0008616: queuosine biosynthetic process	2.75E-06
21	GO:0032544: plastid translation	6.80E-06
22	GO:0006783: heme biosynthetic process	9.52E-06
23	GO:0090391: granum assembly	1.00E-05
24	GO:0009735: response to cytokinin	1.90E-05
25	GO:0006412: translation	6.55E-05
26	GO:0031365: N-terminal protein amino acid modification	6.58E-05
27	GO:0015979: photosynthesis	1.17E-04
28	GO:0009772: photosynthetic electron transport in photosystem II	1.74E-04
29	GO:0048564: photosystem I assembly	2.22E-04
30	GO:0042255: ribosome assembly	2.22E-04
31	GO:1904966: positive regulation of vitamin E biosynthetic process	2.43E-04
32	GO:1904964: positive regulation of phytol biosynthetic process	2.43E-04
33	GO:0042371: vitamin K biosynthetic process	2.43E-04
34	GO:0043686: co-translational protein modification	2.43E-04
35	GO:0006436: tryptophanyl-tRNA aminoacylation	2.43E-04
36	GO:1902458: positive regulation of stomatal opening	2.43E-04
37	GO:0034337: RNA folding	2.43E-04
38	GO:0006434: seryl-tRNA aminoacylation	2.43E-04
39	GO:0006438: valyl-tRNA aminoacylation	2.43E-04
40	GO:0009443: pyridoxal 5'-phosphate salvage	2.43E-04
41	GO:0009090: homoserine biosynthetic process	2.43E-04
42	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.43E-04
43	GO:0043489: RNA stabilization	2.43E-04
44	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	2.43E-04
45	GO:0032502: developmental process	2.85E-04
46	GO:0006779: porphyrin-containing compound biosynthetic process	3.94E-04
47	GO:0009773: photosynthetic electron transport in photosystem I	5.33E-04
48	GO:0006729: tetrahydrobiopterin biosynthetic process	5.39E-04
49	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.39E-04
50	GO:0006568: tryptophan metabolic process	5.39E-04
51	GO:0007000: nucleolus organization	5.39E-04
52	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.39E-04
53	GO:0043039: tRNA aminoacylation	5.39E-04
54	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.39E-04
55	GO:0006423: cysteinyl-tRNA aminoacylation	5.39E-04
56	GO:0019388: galactose catabolic process	5.39E-04
57	GO:0009790: embryo development	7.16E-04
58	GO:0010020: chloroplast fission	7.77E-04
59	GO:0051604: protein maturation	8.75E-04
60	GO:0032504: multicellular organism reproduction	8.75E-04
61	GO:0051211: anisotropic cell growth	8.75E-04
62	GO:0000280: nuclear division	8.75E-04
63	GO:0019563: glycerol catabolic process	8.75E-04
64	GO:0006457: protein folding	1.17E-03
65	GO:0006418: tRNA aminoacylation for protein translation	1.17E-03
66	GO:0009590: detection of gravity	1.25E-03
67	GO:0009067: aspartate family amino acid biosynthetic process	1.25E-03
68	GO:0006571: tyrosine biosynthetic process	1.25E-03
69	GO:0009102: biotin biosynthetic process	1.25E-03
70	GO:0051085: chaperone mediated protein folding requiring cofactor	1.25E-03
71	GO:0010239: chloroplast mRNA processing	1.25E-03
72	GO:0006241: CTP biosynthetic process	1.25E-03
73	GO:0006165: nucleoside diphosphate phosphorylation	1.25E-03
74	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.25E-03
75	GO:0006228: UTP biosynthetic process	1.25E-03
76	GO:0007005: mitochondrion organization	1.40E-03
77	GO:0006183: GTP biosynthetic process	1.67E-03
78	GO:0044206: UMP salvage	1.67E-03
79	GO:0016117: carotenoid biosynthetic process	1.79E-03
80	GO:0042254: ribosome biogenesis	1.83E-03
81	GO:0000413: protein peptidyl-prolyl isomerization	1.94E-03
82	GO:0010236: plastoquinone biosynthetic process	2.13E-03
83	GO:0045038: protein import into chloroplast thylakoid membrane	2.13E-03
84	GO:0043097: pyrimidine nucleoside salvage	2.13E-03
85	GO:0009117: nucleotide metabolic process	2.62E-03
86	GO:0006206: pyrimidine nucleobase metabolic process	2.62E-03
87	GO:0042793: transcription from plastid promoter	2.62E-03
88	GO:0010190: cytochrome b6f complex assembly	2.62E-03
89	GO:0017148: negative regulation of translation	3.15E-03
90	GO:0009088: threonine biosynthetic process	3.15E-03
91	GO:0010019: chloroplast-nucleus signaling pathway	3.15E-03
92	GO:0010555: response to mannitol	3.15E-03
93	GO:0071470: cellular response to osmotic stress	3.15E-03
94	GO:0042026: protein refolding	3.15E-03
95	GO:0042372: phylloquinone biosynthetic process	3.15E-03
96	GO:0009395: phospholipid catabolic process	3.72E-03
97	GO:0010196: nonphotochemical quenching	3.72E-03
98	GO:2000070: regulation of response to water deprivation	4.31E-03
99	GO:0005978: glycogen biosynthetic process	4.31E-03
100	GO:0009642: response to light intensity	4.31E-03
101	GO:0006633: fatty acid biosynthetic process	4.46E-03
102	GO:0048481: plant ovule development	4.83E-03
103	GO:0017004: cytochrome complex assembly	4.93E-03
104	GO:0009657: plastid organization	4.93E-03
105	GO:0009409: response to cold	5.15E-03
106	GO:0043067: regulation of programmed cell death	6.27E-03
107	GO:0009086: methionine biosynthetic process	6.27E-03
108	GO:0031425: chloroplast RNA processing	6.27E-03
109	GO:0019684: photosynthesis, light reaction	7.73E-03
110	GO:0009089: lysine biosynthetic process via diaminopimelate	7.73E-03
111	GO:0006415: translational termination	7.73E-03
112	GO:0045037: protein import into chloroplast stroma	8.49E-03
113	GO:0010628: positive regulation of gene expression	9.29E-03
114	GO:0006006: glucose metabolic process	9.29E-03
115	GO:0006094: gluconeogenesis	9.29E-03
116	GO:0009767: photosynthetic electron transport chain	9.29E-03
117	GO:0042742: defense response to bacterium	9.55E-03
118	GO:0010207: photosystem II assembly	1.01E-02
119	GO:0019253: reductive pentose-phosphate cycle	1.01E-02
120	GO:0010167: response to nitrate	1.10E-02
121	GO:0019344: cysteine biosynthetic process	1.27E-02
122	GO:0009116: nucleoside metabolic process	1.27E-02
123	GO:0043622: cortical microtubule organization	1.37E-02
124	GO:0045454: cell redox homeostasis	1.45E-02
125	GO:0015031: protein transport	1.45E-02
126	GO:0009793: embryo development ending in seed dormancy	1.46E-02
127	GO:0009411: response to UV	1.66E-02
128	GO:0009306: protein secretion	1.76E-02
129	GO:0080022: primary root development	1.97E-02
130	GO:0008033: tRNA processing	1.97E-02
131	GO:0010197: polar nucleus fusion	2.07E-02
132	GO:0009741: response to brassinosteroid	2.07E-02
133	GO:0015986: ATP synthesis coupled proton transport	2.18E-02
134	GO:0019252: starch biosynthetic process	2.29E-02
135	GO:0009451: RNA modification	2.70E-02
136	GO:0000910: cytokinesis	3.01E-02
137	GO:0008380: RNA splicing	3.15E-02
138	GO:0009627: systemic acquired resistance	3.39E-02
139	GO:0042128: nitrate assimilation	3.39E-02
140	GO:0018298: protein-chromophore linkage	3.78E-02
141	GO:0008219: cell death	3.78E-02
142	GO:0009817: defense response to fungus, incompatible interaction	3.78E-02
143	GO:0007568: aging	4.19E-02
144	GO:0009631: cold acclimation	4.19E-02
145	GO:0045087: innate immune response	4.48E-02
146	GO:0034599: cellular response to oxidative stress	4.62E-02
147	GO:0030001: metal ion transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
2	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
3	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
8	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
9	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
10	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
11	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
12	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
13	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
14	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
15	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
16	GO:0019843: rRNA binding	6.53E-10
17	GO:0008479: queuine tRNA-ribosyltransferase activity	2.75E-06
18	GO:0003735: structural constituent of ribosome	2.09E-05
19	GO:0003723: RNA binding	3.04E-05
20	GO:0016279: protein-lysine N-methyltransferase activity	4.12E-05
21	GO:0003729: mRNA binding	1.61E-04
22	GO:0004832: valine-tRNA ligase activity	2.43E-04
23	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.43E-04
24	GO:0004830: tryptophan-tRNA ligase activity	2.43E-04
25	GO:0004665: prephenate dehydrogenase (NADP+) activity	2.43E-04
26	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.43E-04
27	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.43E-04
28	GO:0004807: triose-phosphate isomerase activity	2.43E-04
29	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.43E-04
30	GO:0004828: serine-tRNA ligase activity	2.43E-04
31	GO:0008977: prephenate dehydrogenase (NAD+) activity	2.43E-04
32	GO:0042586: peptide deformylase activity	2.43E-04
33	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.43E-04
34	GO:0033730: arogenate dehydrogenase (NADP+) activity	2.43E-04
35	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.39E-04
36	GO:0004312: fatty acid synthase activity	5.39E-04
37	GO:0004817: cysteine-tRNA ligase activity	5.39E-04
38	GO:0000774: adenyl-nucleotide exchange factor activity	5.39E-04
39	GO:0004412: homoserine dehydrogenase activity	5.39E-04
40	GO:0016630: protochlorophyllide reductase activity	5.39E-04
41	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.39E-04
42	GO:0004614: phosphoglucomutase activity	5.39E-04
43	GO:0004751: ribose-5-phosphate isomerase activity	8.75E-04
44	GO:0070402: NADPH binding	8.75E-04
45	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.75E-04
46	GO:0004550: nucleoside diphosphate kinase activity	1.25E-03
47	GO:0043023: ribosomal large subunit binding	1.25E-03
48	GO:0008097: 5S rRNA binding	1.25E-03
49	GO:0004072: aspartate kinase activity	1.25E-03
50	GO:0035529: NADH pyrophosphatase activity	1.25E-03
51	GO:0016851: magnesium chelatase activity	1.25E-03
52	GO:0048487: beta-tubulin binding	1.25E-03
53	GO:0016149: translation release factor activity, codon specific	1.25E-03
54	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.34E-03
55	GO:0003727: single-stranded RNA binding	1.66E-03
56	GO:0004659: prenyltransferase activity	1.67E-03
57	GO:0004845: uracil phosphoribosyltransferase activity	1.67E-03
58	GO:0043495: protein anchor	1.67E-03
59	GO:0004812: aminoacyl-tRNA ligase activity	1.79E-03
60	GO:0003959: NADPH dehydrogenase activity	2.13E-03
61	GO:0004040: amidase activity	2.13E-03
62	GO:0051082: unfolded protein binding	2.51E-03
63	GO:0016462: pyrophosphatase activity	2.62E-03
64	GO:0051920: peroxiredoxin activity	3.15E-03
65	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.15E-03
66	GO:0004849: uridine kinase activity	3.15E-03
67	GO:0008237: metallopeptidase activity	3.31E-03
68	GO:0016831: carboxy-lyase activity	3.72E-03
69	GO:0008235: metalloexopeptidase activity	3.72E-03
70	GO:0019899: enzyme binding	3.72E-03
71	GO:0016209: antioxidant activity	4.31E-03
72	GO:0004033: aldo-keto reductase (NADP) activity	4.31E-03
73	GO:0003747: translation release factor activity	5.59E-03
74	GO:0005525: GTP binding	6.65E-03
75	GO:0051539: 4 iron, 4 sulfur cluster binding	6.98E-03
76	GO:0004177: aminopeptidase activity	7.73E-03
77	GO:0044183: protein binding involved in protein folding	7.73E-03
78	GO:0031072: heat shock protein binding	9.29E-03
79	GO:0009982: pseudouridine synthase activity	9.29E-03
80	GO:0008266: poly(U) RNA binding	1.01E-02
81	GO:0003690: double-stranded DNA binding	1.10E-02
82	GO:0051087: chaperone binding	1.37E-02
83	GO:0043424: protein histidine kinase binding	1.37E-02
84	GO:0004176: ATP-dependent peptidase activity	1.46E-02
85	GO:0016491: oxidoreductase activity	1.54E-02
86	GO:0022891: substrate-specific transmembrane transporter activity	1.66E-02
87	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.07E-02
88	GO:0008080: N-acetyltransferase activity	2.07E-02
89	GO:0005509: calcium ion binding	2.72E-02
90	GO:0008483: transaminase activity	2.88E-02
91	GO:0016597: amino acid binding	3.01E-02
92	GO:0016168: chlorophyll binding	3.26E-02
93	GO:0042802: identical protein binding	3.35E-02
94	GO:0008236: serine-type peptidase activity	3.65E-02
95	GO:0004222: metalloendopeptidase activity	4.05E-02
96	GO:0003746: translation elongation factor activity	4.48E-02
97	GO:0003993: acid phosphatase activity	4.62E-02
98	GO:0050661: NADP binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.55E-85
2	GO:0009570: chloroplast stroma	1.63E-52
3	GO:0009941: chloroplast envelope	2.94E-35
4	GO:0009535: chloroplast thylakoid membrane	4.46E-33
5	GO:0009579: thylakoid	7.62E-29
6	GO:0009534: chloroplast thylakoid	3.84E-16
7	GO:0009543: chloroplast thylakoid lumen	2.07E-14
8	GO:0031977: thylakoid lumen	1.07E-08
9	GO:0009654: photosystem II oxygen evolving complex	4.71E-08
10	GO:0005840: ribosome	1.14E-06
11	GO:0019898: extrinsic component of membrane	1.31E-05
12	GO:0042651: thylakoid membrane	8.17E-05
13	GO:0031969: chloroplast membrane	8.50E-05
14	GO:0009536: plastid	8.78E-05
15	GO:0009533: chloroplast stromal thylakoid	1.74E-04
16	GO:0009515: granal stacked thylakoid	2.43E-04
17	GO:0009344: nitrite reductase complex [NAD(P)H]	2.43E-04
18	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.43E-04
19	GO:0010319: stromule	3.66E-04
20	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.39E-04
21	GO:0000311: plastid large ribosomal subunit	6.09E-04
22	GO:0009508: plastid chromosome	6.91E-04
23	GO:0030095: chloroplast photosystem II	7.77E-04
24	GO:0033281: TAT protein transport complex	8.75E-04
25	GO:0009526: plastid envelope	1.67E-03
26	GO:0055035: plastid thylakoid membrane	2.13E-03
27	GO:0009706: chloroplast inner membrane	2.51E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.62E-03
29	GO:0009295: nucleoid	3.31E-03
30	GO:0030529: intracellular ribonucleoprotein complex	3.71E-03
31	GO:0009539: photosystem II reaction center	4.93E-03
32	GO:0015934: large ribosomal subunit	5.59E-03
33	GO:0032040: small-subunit processome	8.49E-03
34	GO:0015935: small ribosomal subunit	1.46E-02
35	GO:0009532: plastid stroma	1.46E-02
36	GO:0010287: plastoglobule	1.81E-02
37	GO:0005739: mitochondrion	2.15E-02
38	GO:0009523: photosystem II	2.29E-02
39	GO:0005759: mitochondrial matrix	2.40E-02
40	GO:0048046: apoplast	3.40E-02
41	GO:0022626: cytosolic ribosome	3.66E-02
42	GO:0009707: chloroplast outer membrane	3.78E-02
43	GO:0005874: microtubule	4.86E-02