co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G09995

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
2	GO:0006642: triglyceride mobilization	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
8	GO:0006412: translation	7.49E-15
9	GO:0032544: plastid translation	2.82E-10
10	GO:0042254: ribosome biogenesis	9.49E-09
11	GO:0009658: chloroplast organization	1.61E-07
12	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.14E-06
13	GO:0009735: response to cytokinin	9.77E-06
14	GO:0010027: thylakoid membrane organization	2.21E-05
15	GO:0045038: protein import into chloroplast thylakoid membrane	5.28E-05
16	GO:0015979: photosynthesis	7.34E-05
17	GO:0042372: phylloquinone biosynthetic process	1.08E-04
18	GO:0000413: protein peptidyl-prolyl isomerization	1.34E-04
19	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.13E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	2.13E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	2.13E-04
22	GO:0042371: vitamin K biosynthetic process	2.13E-04
23	GO:1902458: positive regulation of stomatal opening	2.13E-04
24	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.13E-04
25	GO:0015995: chlorophyll biosynthetic process	4.13E-04
26	GO:0019684: photosynthesis, light reaction	4.43E-04
27	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.76E-04
28	GO:0031648: protein destabilization	4.76E-04
29	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.76E-04
30	GO:0009790: embryo development	5.36E-04
31	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.74E-04
32	GO:0019563: glycerol catabolic process	7.74E-04
33	GO:0006518: peptide metabolic process	7.74E-04
34	GO:0032504: multicellular organism reproduction	7.74E-04
35	GO:0006165: nucleoside diphosphate phosphorylation	1.10E-03
36	GO:0006228: UTP biosynthetic process	1.10E-03
37	GO:0016556: mRNA modification	1.10E-03
38	GO:0010731: protein glutathionylation	1.10E-03
39	GO:0006424: glutamyl-tRNA aminoacylation	1.10E-03
40	GO:0046739: transport of virus in multicellular host	1.10E-03
41	GO:2001141: regulation of RNA biosynthetic process	1.10E-03
42	GO:0006241: CTP biosynthetic process	1.10E-03
43	GO:0009306: protein secretion	1.38E-03
44	GO:2000122: negative regulation of stomatal complex development	1.47E-03
45	GO:0010037: response to carbon dioxide	1.47E-03
46	GO:0006808: regulation of nitrogen utilization	1.47E-03
47	GO:0015976: carbon utilization	1.47E-03
48	GO:0009765: photosynthesis, light harvesting	1.47E-03
49	GO:0006183: GTP biosynthetic process	1.47E-03
50	GO:0016117: carotenoid biosynthetic process	1.49E-03
51	GO:0034052: positive regulation of plant-type hypersensitive response	1.87E-03
52	GO:0016120: carotene biosynthetic process	1.87E-03
53	GO:0032543: mitochondrial translation	1.87E-03
54	GO:0010236: plastoquinone biosynthetic process	1.87E-03
55	GO:0016123: xanthophyll biosynthetic process	1.87E-03
56	GO:0009247: glycolipid biosynthetic process	1.87E-03
57	GO:0032973: amino acid export	2.31E-03
58	GO:0010555: response to mannitol	2.77E-03
59	GO:0006457: protein folding	3.13E-03
60	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.26E-03
61	GO:0010444: guard mother cell differentiation	3.26E-03
62	GO:0009610: response to symbiotic fungus	3.26E-03
63	GO:0009395: phospholipid catabolic process	3.26E-03
64	GO:0009772: photosynthetic electron transport in photosystem II	3.26E-03
65	GO:0043090: amino acid import	3.26E-03
66	GO:0009642: response to light intensity	3.78E-03
67	GO:0042255: ribosome assembly	3.78E-03
68	GO:0006353: DNA-templated transcription, termination	3.78E-03
69	GO:0043068: positive regulation of programmed cell death	3.78E-03
70	GO:0006605: protein targeting	3.78E-03
71	GO:0019375: galactolipid biosynthetic process	3.78E-03
72	GO:2000070: regulation of response to water deprivation	3.78E-03
73	GO:0048564: photosystem I assembly	3.78E-03
74	GO:0010497: plasmodesmata-mediated intercellular transport	4.33E-03
75	GO:0009657: plastid organization	4.33E-03
76	GO:0071482: cellular response to light stimulus	4.33E-03
77	GO:0051865: protein autoubiquitination	4.90E-03
78	GO:0010206: photosystem II repair	4.90E-03
79	GO:0080144: amino acid homeostasis	4.90E-03
80	GO:0006783: heme biosynthetic process	4.90E-03
81	GO:0009051: pentose-phosphate shunt, oxidative branch	4.90E-03
82	GO:0030001: metal ion transport	5.77E-03
83	GO:0006782: protoporphyrinogen IX biosynthetic process	6.12E-03
84	GO:0009773: photosynthetic electron transport in photosystem I	6.77E-03
85	GO:0006415: translational termination	6.77E-03
86	GO:0009089: lysine biosynthetic process via diaminopimelate	6.77E-03
87	GO:0009073: aromatic amino acid family biosynthetic process	6.77E-03
88	GO:0006352: DNA-templated transcription, initiation	6.77E-03
89	GO:0018119: peptidyl-cysteine S-nitrosylation	6.77E-03
90	GO:0045037: protein import into chloroplast stroma	7.44E-03
91	GO:0010628: positive regulation of gene expression	8.13E-03
92	GO:0006006: glucose metabolic process	8.13E-03
93	GO:0050826: response to freezing	8.13E-03
94	GO:0006094: gluconeogenesis	8.13E-03
95	GO:0009767: photosynthetic electron transport chain	8.13E-03
96	GO:0019253: reductive pentose-phosphate cycle	8.84E-03
97	GO:0010207: photosystem II assembly	8.84E-03
98	GO:0009793: embryo development ending in seed dormancy	1.01E-02
99	GO:0006636: unsaturated fatty acid biosynthetic process	1.03E-02
100	GO:0000027: ribosomal large subunit assembly	1.11E-02
101	GO:0019344: cysteine biosynthetic process	1.11E-02
102	GO:0009814: defense response, incompatible interaction	1.36E-02
103	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.36E-02
104	GO:0009411: response to UV	1.45E-02
105	GO:0019722: calcium-mediated signaling	1.53E-02
106	GO:0042335: cuticle development	1.72E-02
107	GO:0080022: primary root development	1.72E-02
108	GO:0008033: tRNA processing	1.72E-02
109	GO:0006633: fatty acid biosynthetic process	1.98E-02
110	GO:0002229: defense response to oomycetes	2.10E-02
111	GO:0000302: response to reactive oxygen species	2.10E-02
112	GO:0032502: developmental process	2.20E-02
113	GO:0042742: defense response to bacterium	2.31E-02
114	GO:1901657: glycosyl compound metabolic process	2.31E-02
115	GO:0007267: cell-cell signaling	2.52E-02
116	GO:0008380: RNA splicing	2.60E-02
117	GO:0055114: oxidation-reduction process	2.84E-02
118	GO:0009627: systemic acquired resistance	2.95E-02
119	GO:0016311: dephosphorylation	3.18E-02
120	GO:0009817: defense response to fungus, incompatible interaction	3.30E-02
121	GO:0018298: protein-chromophore linkage	3.30E-02
122	GO:0009407: toxin catabolic process	3.54E-02
123	GO:0010119: regulation of stomatal movement	3.66E-02
124	GO:0009637: response to blue light	3.91E-02
125	GO:0034599: cellular response to oxidative stress	4.03E-02
126	GO:0006839: mitochondrial transport	4.29E-02
127	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.31E-02
128	GO:0006631: fatty acid metabolic process	4.41E-02
129	GO:0042542: response to hydrogen peroxide	4.55E-02
130	GO:0010114: response to red light	4.68E-02
131	GO:0045454: cell redox homeostasis	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
6	GO:0019843: rRNA binding	1.13E-21
7	GO:0003735: structural constituent of ribosome	5.54E-17
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.73E-06
9	GO:0016851: magnesium chelatase activity	1.79E-05
10	GO:0051920: peroxiredoxin activity	1.08E-04
11	GO:0016209: antioxidant activity	1.82E-04
12	GO:0004853: uroporphyrinogen decarboxylase activity	2.13E-04
13	GO:0009374: biotin binding	2.13E-04
14	GO:0004807: triose-phosphate isomerase activity	2.13E-04
15	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.13E-04
16	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.76E-04
17	GO:0042389: omega-3 fatty acid desaturase activity	4.76E-04
18	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.76E-04
19	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	4.76E-04
20	GO:0004148: dihydrolipoyl dehydrogenase activity	7.74E-04
21	GO:0045174: glutathione dehydrogenase (ascorbate) activity	7.74E-04
22	GO:0070330: aromatase activity	7.74E-04
23	GO:0017150: tRNA dihydrouridine synthase activity	7.74E-04
24	GO:0035250: UDP-galactosyltransferase activity	1.10E-03
25	GO:0016149: translation release factor activity, codon specific	1.10E-03
26	GO:0004550: nucleoside diphosphate kinase activity	1.10E-03
27	GO:0043023: ribosomal large subunit binding	1.10E-03
28	GO:0008097: 5S rRNA binding	1.10E-03
29	GO:0043495: protein anchor	1.47E-03
30	GO:0004659: prenyltransferase activity	1.47E-03
31	GO:0001053: plastid sigma factor activity	1.47E-03
32	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.47E-03
33	GO:0004045: aminoacyl-tRNA hydrolase activity	1.47E-03
34	GO:0016987: sigma factor activity	1.47E-03
35	GO:0018685: alkane 1-monooxygenase activity	1.87E-03
36	GO:0003989: acetyl-CoA carboxylase activity	1.87E-03
37	GO:0004130: cytochrome-c peroxidase activity	2.31E-03
38	GO:0016208: AMP binding	2.31E-03
39	GO:0008200: ion channel inhibitor activity	2.31E-03
40	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.77E-03
41	GO:0019899: enzyme binding	3.26E-03
42	GO:0008312: 7S RNA binding	3.78E-03
43	GO:0008236: serine-type peptidase activity	3.81E-03
44	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.33E-03
45	GO:0003747: translation release factor activity	4.90E-03
46	GO:0003993: acid phosphatase activity	5.30E-03
47	GO:0004364: glutathione transferase activity	6.27E-03
48	GO:0004601: peroxidase activity	6.87E-03
49	GO:0004089: carbonate dehydratase activity	8.13E-03
50	GO:0003690: double-stranded DNA binding	9.11E-03
51	GO:0043424: protein histidine kinase binding	1.19E-02
52	GO:0022891: substrate-specific transmembrane transporter activity	1.45E-02
53	GO:0003727: single-stranded RNA binding	1.53E-02
54	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.62E-02
55	GO:0003713: transcription coactivator activity	1.81E-02
56	GO:0008080: N-acetyltransferase activity	1.81E-02
57	GO:0010181: FMN binding	1.91E-02
58	GO:0005509: calcium ion binding	2.05E-02
59	GO:0016597: amino acid binding	2.62E-02
60	GO:0016168: chlorophyll binding	2.84E-02
61	GO:0102483: scopolin beta-glucosidase activity	3.07E-02
62	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.30E-02
63	GO:0004222: metalloendopeptidase activity	3.54E-02
64	GO:0003729: mRNA binding	4.12E-02
65	GO:0008422: beta-glucosidase activity	4.16E-02
66	GO:0003723: RNA binding	4.29E-02
67	GO:0050661: NADP binding	4.29E-02
68	GO:0020037: heme binding	4.48E-02
69	GO:0019825: oxygen binding	4.71E-02
70	GO:0043621: protein self-association	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.99E-55
2	GO:0009570: chloroplast stroma	3.38E-38
3	GO:0009941: chloroplast envelope	2.17E-34
4	GO:0009579: thylakoid	1.22E-19
5	GO:0009543: chloroplast thylakoid lumen	3.24E-18
6	GO:0009535: chloroplast thylakoid membrane	2.52E-15
7	GO:0005840: ribosome	1.39E-13
8	GO:0031977: thylakoid lumen	2.92E-12
9	GO:0009534: chloroplast thylakoid	3.03E-07
10	GO:0009654: photosystem II oxygen evolving complex	1.70E-06
11	GO:0010007: magnesium chelatase complex	7.85E-06
12	GO:0019898: extrinsic component of membrane	8.80E-06
13	GO:0000311: plastid large ribosomal subunit	2.02E-05
14	GO:0009536: plastid	4.60E-05
15	GO:0009533: chloroplast stromal thylakoid	1.42E-04
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.13E-04
17	GO:0009344: nitrite reductase complex [NAD(P)H]	2.13E-04
18	GO:0009706: chloroplast inner membrane	2.94E-04
19	GO:0042170: plastid membrane	4.76E-04
20	GO:0080085: signal recognition particle, chloroplast targeting	4.76E-04
21	GO:0015934: large ribosomal subunit	5.67E-04
22	GO:0000312: plastid small ribosomal subunit	6.47E-04
23	GO:0030095: chloroplast photosystem II	6.47E-04
24	GO:0009317: acetyl-CoA carboxylase complex	7.74E-04
25	GO:0033281: TAT protein transport complex	7.74E-04
26	GO:0042651: thylakoid membrane	9.78E-04
27	GO:0009295: nucleoid	2.74E-03
28	GO:0009505: plant-type cell wall	3.03E-03
29	GO:0048046: apoplast	3.17E-03
30	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.33E-03
31	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.90E-03
32	GO:0022626: cytosolic ribosome	7.47E-03
33	GO:0009508: plastid chromosome	8.13E-03
34	GO:0031969: chloroplast membrane	9.04E-03
35	GO:0022625: cytosolic large ribosomal subunit	9.64E-03
36	GO:0016020: membrane	1.17E-02
37	GO:0015935: small ribosomal subunit	1.27E-02
38	GO:0009523: photosystem II	2.00E-02
39	GO:0005778: peroxisomal membrane	2.52E-02
40	GO:0030529: intracellular ribonucleoprotein complex	2.73E-02
41	GO:0022627: cytosolic small ribosomal subunit	2.88E-02
42	GO:0046658: anchored component of plasma membrane	2.88E-02