co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G09760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0008064: regulation of actin polymerization or depolymerization	0.00E+00
2	GO:0051493: regulation of cytoskeleton organization	0.00E+00
3	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
9	GO:0007638: mechanosensory behavior	0.00E+00
10	GO:0060416: response to growth hormone	0.00E+00
11	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
12	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
13	GO:0015995: chlorophyll biosynthetic process	6.23E-07
14	GO:0018026: peptidyl-lysine monomethylation	7.22E-06
15	GO:0032544: plastid translation	2.33E-05
16	GO:0006546: glycine catabolic process	9.64E-05
17	GO:0010020: chloroplast fission	1.26E-04
18	GO:0016123: xanthophyll biosynthetic process	1.50E-04
19	GO:0032543: mitochondrial translation	1.50E-04
20	GO:0006655: phosphatidylglycerol biosynthetic process	2.14E-04
21	GO:0016998: cell wall macromolecule catabolic process	2.67E-04
22	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	4.02E-04
23	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.02E-04
24	GO:0060627: regulation of vesicle-mediated transport	4.02E-04
25	GO:0043266: regulation of potassium ion transport	4.02E-04
26	GO:0010442: guard cell morphogenesis	4.02E-04
27	GO:2000021: regulation of ion homeostasis	4.02E-04
28	GO:0043007: maintenance of rDNA	4.02E-04
29	GO:0006353: DNA-templated transcription, termination	4.66E-04
30	GO:0000413: protein peptidyl-prolyl isomerization	4.68E-04
31	GO:0006633: fatty acid biosynthetic process	5.07E-04
32	GO:0071554: cell wall organization or biogenesis	6.76E-04
33	GO:0006779: porphyrin-containing compound biosynthetic process	8.05E-04
34	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.71E-04
35	GO:0052541: plant-type cell wall cellulose metabolic process	8.71E-04
36	GO:0010198: synergid death	8.71E-04
37	GO:0046741: transport of virus in host, tissue to tissue	8.71E-04
38	GO:0045717: negative regulation of fatty acid biosynthetic process	8.71E-04
39	GO:0080148: negative regulation of response to water deprivation	8.71E-04
40	GO:0006782: protoporphyrinogen IX biosynthetic process	9.37E-04
41	GO:0010027: thylakoid membrane organization	1.07E-03
42	GO:0006415: translational termination	1.08E-03
43	GO:0016024: CDP-diacylglycerol biosynthetic process	1.23E-03
44	GO:0009658: chloroplast organization	1.29E-03
45	GO:0010411: xyloglucan metabolic process	1.32E-03
46	GO:1902448: positive regulation of shade avoidance	1.41E-03
47	GO:2001295: malonyl-CoA biosynthetic process	1.41E-03
48	GO:0009817: defense response to fungus, incompatible interaction	1.50E-03
49	GO:0010207: photosystem II assembly	1.57E-03
50	GO:0009407: toxin catabolic process	1.70E-03
51	GO:0010371: regulation of gibberellin biosynthetic process	2.04E-03
52	GO:0007231: osmosensory signaling pathway	2.04E-03
53	GO:0010239: chloroplast mRNA processing	2.04E-03
54	GO:0006424: glutamyl-tRNA aminoacylation	2.04E-03
55	GO:0016556: mRNA modification	2.04E-03
56	GO:0046739: transport of virus in multicellular host	2.04E-03
57	GO:0043572: plastid fission	2.04E-03
58	GO:0055070: copper ion homeostasis	2.04E-03
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.04E-03
60	GO:0015979: photosynthesis	2.39E-03
61	GO:0006418: tRNA aminoacylation for protein translation	2.41E-03
62	GO:0015976: carbon utilization	2.74E-03
63	GO:0019464: glycine decarboxylation via glycine cleavage system	2.74E-03
64	GO:0009765: photosynthesis, light harvesting	2.74E-03
65	GO:0033500: carbohydrate homeostasis	2.74E-03
66	GO:0031122: cytoplasmic microtubule organization	2.74E-03
67	GO:0008295: spermidine biosynthetic process	2.74E-03
68	GO:0006749: glutathione metabolic process	2.74E-03
69	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	2.74E-03
70	GO:0042546: cell wall biogenesis	2.95E-03
71	GO:0009636: response to toxic substance	3.25E-03
72	GO:0000304: response to singlet oxygen	3.51E-03
73	GO:0016120: carotene biosynthetic process	3.51E-03
74	GO:0045487: gibberellin catabolic process	3.51E-03
75	GO:0035434: copper ion transmembrane transport	3.51E-03
76	GO:0016117: carotenoid biosynthetic process	3.73E-03
77	GO:0006751: glutathione catabolic process	4.35E-03
78	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.35E-03
79	GO:0016554: cytidine to uridine editing	4.35E-03
80	GO:0006796: phosphate-containing compound metabolic process	4.35E-03
81	GO:0042793: transcription from plastid promoter	4.35E-03
82	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.35E-03
83	GO:0010190: cytochrome b6f complex assembly	4.35E-03
84	GO:0010405: arabinogalactan protein metabolic process	4.35E-03
85	GO:0042372: phylloquinone biosynthetic process	5.24E-03
86	GO:1901259: chloroplast rRNA processing	5.24E-03
87	GO:0009554: megasporogenesis	5.24E-03
88	GO:0010555: response to mannitol	5.24E-03
89	GO:0042254: ribosome biogenesis	5.68E-03
90	GO:0007264: small GTPase mediated signal transduction	5.73E-03
91	GO:0006955: immune response	6.19E-03
92	GO:0009395: phospholipid catabolic process	6.19E-03
93	GO:0009828: plant-type cell wall loosening	6.51E-03
94	GO:0016559: peroxisome fission	7.20E-03
95	GO:0048564: photosystem I assembly	7.20E-03
96	GO:0045292: mRNA cis splicing, via spliceosome	7.20E-03
97	GO:0010928: regulation of auxin mediated signaling pathway	7.20E-03
98	GO:0009642: response to light intensity	7.20E-03
99	GO:0042255: ribosome assembly	7.20E-03
100	GO:0009704: de-etiolation	7.20E-03
101	GO:0051607: defense response to virus	7.34E-03
102	GO:0010497: plasmodesmata-mediated intercellular transport	8.26E-03
103	GO:0009657: plastid organization	8.26E-03
104	GO:0006526: arginine biosynthetic process	8.26E-03
105	GO:0017004: cytochrome complex assembly	8.26E-03
106	GO:0009627: systemic acquired resistance	8.68E-03
107	GO:0010206: photosystem II repair	9.38E-03
108	GO:0006783: heme biosynthetic process	9.38E-03
109	GO:0006754: ATP biosynthetic process	9.38E-03
110	GO:0000373: Group II intron splicing	9.38E-03
111	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	1.06E-02
112	GO:1900865: chloroplast RNA modification	1.06E-02
113	GO:0006949: syncytium formation	1.18E-02
114	GO:0019538: protein metabolic process	1.18E-02
115	GO:0006816: calcium ion transport	1.30E-02
116	GO:0009773: photosynthetic electron transport in photosystem I	1.30E-02
117	GO:0009073: aromatic amino acid family biosynthetic process	1.30E-02
118	GO:0018119: peptidyl-cysteine S-nitrosylation	1.30E-02
119	GO:0006412: translation	1.33E-02
120	GO:0006820: anion transport	1.44E-02
121	GO:0030001: metal ion transport	1.47E-02
122	GO:0009767: photosynthetic electron transport chain	1.57E-02
123	GO:0050826: response to freezing	1.57E-02
124	GO:0070588: calcium ion transmembrane transport	1.86E-02
125	GO:0006071: glycerol metabolic process	2.01E-02
126	GO:0042538: hyperosmotic salinity response	2.10E-02
127	GO:0009664: plant-type cell wall organization	2.10E-02
128	GO:0019344: cysteine biosynthetic process	2.16E-02
129	GO:0007010: cytoskeleton organization	2.16E-02
130	GO:0019953: sexual reproduction	2.32E-02
131	GO:0010026: trichome differentiation	2.32E-02
132	GO:0031408: oxylipin biosynthetic process	2.48E-02
133	GO:0016226: iron-sulfur cluster assembly	2.64E-02
134	GO:0006012: galactose metabolic process	2.81E-02
135	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.81E-02
136	GO:0009735: response to cytokinin	2.84E-02
137	GO:0009306: protein secretion	2.99E-02
138	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.07E-02
139	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.16E-02
140	GO:0009416: response to light stimulus	3.24E-02
141	GO:0008033: tRNA processing	3.34E-02
142	GO:0071555: cell wall organization	3.40E-02
143	GO:0008360: regulation of cell shape	3.53E-02
144	GO:0009958: positive gravitropism	3.53E-02
145	GO:0006520: cellular amino acid metabolic process	3.53E-02
146	GO:0045454: cell redox homeostasis	3.68E-02
147	GO:0002229: defense response to oomycetes	4.09E-02
148	GO:0032502: developmental process	4.29E-02
149	GO:0016042: lipid catabolic process	4.60E-02
150	GO:0016125: sterol metabolic process	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
2	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
3	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
4	GO:0004496: mevalonate kinase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0004823: leucine-tRNA ligase activity	0.00E+00
9	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
10	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
11	GO:0019843: rRNA binding	3.07E-07
12	GO:0016851: magnesium chelatase activity	3.23E-07
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.55E-07
14	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	7.22E-06
15	GO:0005528: FK506 binding	9.98E-06
16	GO:0002161: aminoacyl-tRNA editing activity	2.51E-05
17	GO:0016149: translation release factor activity, codon specific	5.48E-05
18	GO:0016279: protein-lysine N-methyltransferase activity	9.64E-05
19	GO:0051920: peroxiredoxin activity	2.88E-04
20	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.02E-04
21	GO:0004560: alpha-L-fucosidase activity	4.02E-04
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.02E-04
23	GO:0042834: peptidoglycan binding	4.02E-04
24	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	4.02E-04
25	GO:0008568: microtubule-severing ATPase activity	4.02E-04
26	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.02E-04
27	GO:0004328: formamidase activity	4.02E-04
28	GO:0016209: antioxidant activity	4.66E-04
29	GO:0016762: xyloglucan:xyloglucosyl transferase activity	6.76E-04
30	GO:0003747: translation release factor activity	6.82E-04
31	GO:0003839: gamma-glutamylcyclotransferase activity	8.71E-04
32	GO:0004047: aminomethyltransferase activity	8.71E-04
33	GO:0004766: spermidine synthase activity	8.71E-04
34	GO:0008883: glutamyl-tRNA reductase activity	8.71E-04
35	GO:0016413: O-acetyltransferase activity	9.99E-04
36	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.32E-03
37	GO:0016788: hydrolase activity, acting on ester bonds	1.33E-03
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.41E-03
39	GO:0016531: copper chaperone activity	1.41E-03
40	GO:0019829: cation-transporting ATPase activity	1.41E-03
41	GO:0004148: dihydrolipoyl dehydrogenase activity	1.41E-03
42	GO:0004075: biotin carboxylase activity	1.41E-03
43	GO:0030267: glyoxylate reductase (NADP) activity	1.41E-03
44	GO:0008097: 5S rRNA binding	2.04E-03
45	GO:0001872: (1->3)-beta-D-glucan binding	2.04E-03
46	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.04E-03
47	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.04E-03
48	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.04E-03
49	GO:0043023: ribosomal large subunit binding	2.04E-03
50	GO:0052689: carboxylic ester hydrolase activity	2.25E-03
51	GO:0004364: glutathione transferase activity	2.66E-03
52	GO:0003735: structural constituent of ribosome	2.66E-03
53	GO:0016836: hydro-lyase activity	2.74E-03
54	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.74E-03
55	GO:0052793: pectin acetylesterase activity	2.74E-03
56	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.74E-03
57	GO:0003989: acetyl-CoA carboxylase activity	3.51E-03
58	GO:0008381: mechanically-gated ion channel activity	3.51E-03
59	GO:0004812: aminoacyl-tRNA ligase activity	3.73E-03
60	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.35E-03
61	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.35E-03
62	GO:0042578: phosphoric ester hydrolase activity	4.35E-03
63	GO:0016208: AMP binding	4.35E-03
64	GO:0008200: ion channel inhibitor activity	4.35E-03
65	GO:0015631: tubulin binding	5.24E-03
66	GO:0102391: decanoate--CoA ligase activity	5.24E-03
67	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.24E-03
68	GO:0004427: inorganic diphosphatase activity	6.19E-03
69	GO:0043295: glutathione binding	6.19E-03
70	GO:0004467: long-chain fatty acid-CoA ligase activity	6.19E-03
71	GO:0008237: metallopeptidase activity	6.91E-03
72	GO:0004034: aldose 1-epimerase activity	7.20E-03
73	GO:0004033: aldo-keto reductase (NADP) activity	7.20E-03
74	GO:0005375: copper ion transmembrane transporter activity	8.26E-03
75	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.87E-03
76	GO:0008889: glycerophosphodiester phosphodiesterase activity	9.38E-03
77	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	9.38E-03
78	GO:0008236: serine-type peptidase activity	9.66E-03
79	GO:0004222: metalloendopeptidase activity	1.12E-02
80	GO:0047372: acylglycerol lipase activity	1.30E-02
81	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.30E-02
82	GO:0003993: acid phosphatase activity	1.35E-02
83	GO:0008378: galactosyltransferase activity	1.44E-02
84	GO:0000049: tRNA binding	1.44E-02
85	GO:0005262: calcium channel activity	1.57E-02
86	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.57E-02
87	GO:0004519: endonuclease activity	1.57E-02
88	GO:0004089: carbonate dehydratase activity	1.57E-02
89	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.65E-02
90	GO:0043621: protein self-association	1.81E-02
91	GO:0051536: iron-sulfur cluster binding	2.16E-02
92	GO:0043424: protein histidine kinase binding	2.32E-02
93	GO:0008324: cation transmembrane transporter activity	2.32E-02
94	GO:0003690: double-stranded DNA binding	2.33E-02
95	GO:0004176: ATP-dependent peptidase activity	2.48E-02
96	GO:0016887: ATPase activity	2.66E-02
97	GO:0003727: single-stranded RNA binding	2.99E-02
98	GO:0003713: transcription coactivator activity	3.53E-02
99	GO:0016853: isomerase activity	3.71E-02
100	GO:0050662: coenzyme binding	3.71E-02
101	GO:0019901: protein kinase binding	3.90E-02
102	GO:0016758: transferase activity, transferring hexosyl groups	3.90E-02
103	GO:0048038: quinone binding	4.09E-02
104	GO:0003924: GTPase activity	4.76E-02
105	GO:0008483: transaminase activity	4.90E-02
106	GO:0030246: carbohydrate binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0070971: endoplasmic reticulum exit site	0.00E+00
3	GO:0009507: chloroplast	6.00E-38
4	GO:0009570: chloroplast stroma	8.92E-23
5	GO:0009941: chloroplast envelope	4.42E-20
6	GO:0009534: chloroplast thylakoid	2.24E-13
7	GO:0009543: chloroplast thylakoid lumen	1.72E-12
8	GO:0009535: chloroplast thylakoid membrane	1.65E-10
9	GO:0031977: thylakoid lumen	2.08E-10
10	GO:0009579: thylakoid	3.75E-08
11	GO:0010007: magnesium chelatase complex	6.71E-08
12	GO:0031969: chloroplast membrane	1.20E-05
13	GO:0009536: plastid	1.31E-05
14	GO:0031225: anchored component of membrane	4.87E-05
15	GO:0046658: anchored component of plasma membrane	2.02E-04
16	GO:0009533: chloroplast stromal thylakoid	3.73E-04
17	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.02E-04
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.82E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.71E-04
20	GO:0009706: chloroplast inner membrane	1.23E-03
21	GO:0005840: ribosome	1.55E-03
22	GO:0010287: plastoglobule	1.59E-03
23	GO:0043234: protein complex	1.97E-03
24	GO:0005960: glycine cleavage complex	2.04E-03
25	GO:0048046: apoplast	2.09E-03
26	GO:0009505: plant-type cell wall	2.38E-03
27	GO:0005618: cell wall	2.69E-03
28	GO:0005886: plasma membrane	6.05E-03
29	GO:0000311: plastid large ribosomal subunit	1.44E-02
30	GO:0009508: plastid chromosome	1.57E-02
31	GO:0043231: intracellular membrane-bounded organelle	1.60E-02
32	GO:0042651: thylakoid membrane	2.32E-02
33	GO:0022626: cytosolic ribosome	3.04E-02
34	GO:0019898: extrinsic component of membrane	3.90E-02
35	GO:0016020: membrane	3.91E-02
36	GO:0009295: nucleoid	4.90E-02
37	GO:0005778: peroxisomal membrane	4.90E-02