Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G09590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046292: formaldehyde metabolic process0.00E+00
2GO:0030149: sphingolipid catabolic process0.00E+00
3GO:0006069: ethanol oxidation0.00E+00
4GO:0006182: cGMP biosynthetic process0.00E+00
5GO:0046686: response to cadmium ion2.49E-07
6GO:0006101: citrate metabolic process1.93E-06
7GO:0051788: response to misfolded protein1.93E-06
8GO:0009651: response to salt stress2.00E-06
9GO:0006099: tricarboxylic acid cycle2.80E-06
10GO:0006102: isocitrate metabolic process2.94E-06
11GO:0001676: long-chain fatty acid metabolic process1.63E-05
12GO:0006499: N-terminal protein myristoylation3.93E-05
13GO:0006097: glyoxylate cycle4.82E-05
14GO:0006121: mitochondrial electron transport, succinate to ubiquinone7.11E-05
15GO:0043248: proteasome assembly7.11E-05
16GO:0006457: protein folding1.51E-04
17GO:0080173: male-female gamete recognition during double fertilization2.02E-04
18GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.02E-04
19GO:0010726: positive regulation of hydrogen peroxide metabolic process2.02E-04
20GO:0003400: regulation of COPII vesicle coating2.02E-04
21GO:0006007: glucose catabolic process2.02E-04
22GO:0006390: transcription from mitochondrial promoter2.02E-04
23GO:0048448: stamen morphogenesis2.02E-04
24GO:0048455: stamen formation2.02E-04
25GO:0035266: meristem growth2.02E-04
26GO:0010450: inflorescence meristem growth2.02E-04
27GO:0007292: female gamete generation2.02E-04
28GO:0006805: xenobiotic metabolic process2.02E-04
29GO:0051938: L-glutamate import2.02E-04
30GO:0015760: glucose-6-phosphate transport2.02E-04
31GO:1990641: response to iron ion starvation2.02E-04
32GO:0043067: regulation of programmed cell death3.01E-04
33GO:0007051: spindle organization4.52E-04
34GO:0019521: D-gluconate metabolic process4.52E-04
35GO:0019752: carboxylic acid metabolic process4.52E-04
36GO:0019374: galactolipid metabolic process4.52E-04
37GO:1902000: homogentisate catabolic process4.52E-04
38GO:0008535: respiratory chain complex IV assembly4.52E-04
39GO:0015712: hexose phosphate transport4.52E-04
40GO:0019441: tryptophan catabolic process to kynurenine4.52E-04
41GO:0097054: L-glutamate biosynthetic process4.52E-04
42GO:0043091: L-arginine import4.52E-04
43GO:0006597: spermine biosynthetic process4.52E-04
44GO:0010155: regulation of proton transport4.52E-04
45GO:0048833: specification of floral organ number4.52E-04
46GO:0010043: response to zinc ion5.14E-04
47GO:0009408: response to heat6.35E-04
48GO:0090351: seedling development6.71E-04
49GO:0015714: phosphoenolpyruvate transport7.36E-04
50GO:0035436: triose phosphate transmembrane transport7.36E-04
51GO:0045039: protein import into mitochondrial inner membrane7.36E-04
52GO:0009072: aromatic amino acid family metabolic process7.36E-04
53GO:0060968: regulation of gene silencing7.36E-04
54GO:0006855: drug transmembrane transport9.61E-04
55GO:0006537: glutamate biosynthetic process1.05E-03
56GO:0072334: UDP-galactose transmembrane transport1.05E-03
57GO:0042823: pyridoxal phosphate biosynthetic process1.05E-03
58GO:0055114: oxidation-reduction process1.16E-03
59GO:1902584: positive regulation of response to water deprivation1.40E-03
60GO:0010363: regulation of plant-type hypersensitive response1.40E-03
61GO:0033356: UDP-L-arabinose metabolic process1.40E-03
62GO:0051205: protein insertion into membrane1.40E-03
63GO:0015713: phosphoglycerate transport1.40E-03
64GO:0010109: regulation of photosynthesis1.40E-03
65GO:0019676: ammonia assimilation cycle1.40E-03
66GO:0010118: stomatal movement1.49E-03
67GO:0006979: response to oxidative stress1.68E-03
68GO:0009555: pollen development1.73E-03
69GO:0009697: salicylic acid biosynthetic process1.78E-03
70GO:0006090: pyruvate metabolic process1.78E-03
71GO:0045927: positive regulation of growth1.78E-03
72GO:0006564: L-serine biosynthetic process1.78E-03
73GO:0006461: protein complex assembly1.78E-03
74GO:0007029: endoplasmic reticulum organization1.78E-03
75GO:0006405: RNA export from nucleus1.78E-03
76GO:0009624: response to nematode1.79E-03
77GO:0010193: response to ozone1.98E-03
78GO:0007264: small GTPase mediated signal transduction2.11E-03
79GO:0006596: polyamine biosynthetic process2.19E-03
80GO:0042176: regulation of protein catabolic process2.19E-03
81GO:0009643: photosynthetic acclimation2.19E-03
82GO:0006014: D-ribose metabolic process2.19E-03
83GO:0035435: phosphate ion transmembrane transport2.19E-03
84GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.19E-03
85GO:0000060: protein import into nucleus, translocation2.19E-03
86GO:0010942: positive regulation of cell death2.19E-03
87GO:0006751: glutathione catabolic process2.19E-03
88GO:0048827: phyllome development2.19E-03
89GO:0048232: male gamete generation2.19E-03
90GO:0010286: heat acclimation2.54E-03
91GO:1901001: negative regulation of response to salt stress2.63E-03
92GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.63E-03
93GO:0034389: lipid particle organization2.63E-03
94GO:0006120: mitochondrial electron transport, NADH to ubiquinone2.63E-03
95GO:0009615: response to virus2.85E-03
96GO:0006511: ubiquitin-dependent protein catabolic process2.96E-03
97GO:0080186: developmental vegetative growth3.09E-03
98GO:0042773: ATP synthesis coupled electron transport3.09E-03
99GO:0019745: pentacyclic triterpenoid biosynthetic process3.09E-03
100GO:0000082: G1/S transition of mitotic cell cycle3.09E-03
101GO:0048528: post-embryonic root development3.09E-03
102GO:0006888: ER to Golgi vesicle-mediated transport3.35E-03
103GO:0009061: anaerobic respiration3.59E-03
104GO:0010078: maintenance of root meristem identity3.59E-03
105GO:0006644: phospholipid metabolic process3.59E-03
106GO:0008219: cell death3.71E-03
107GO:0048767: root hair elongation3.89E-03
108GO:0009880: embryonic pattern specification4.10E-03
109GO:0009657: plastid organization4.10E-03
110GO:0006098: pentose-phosphate shunt4.65E-03
111GO:0045087: innate immune response4.69E-03
112GO:0009853: photorespiration4.69E-03
113GO:0090332: stomatal closure5.21E-03
114GO:0006631: fatty acid metabolic process5.57E-03
115GO:0051555: flavonol biosynthetic process5.80E-03
116GO:0000103: sulfate assimilation5.80E-03
117GO:0043069: negative regulation of programmed cell death5.80E-03
118GO:0048829: root cap development5.80E-03
119GO:0009744: response to sucrose6.04E-03
120GO:0009735: response to cytokinin6.19E-03
121GO:0009807: lignan biosynthetic process6.41E-03
122GO:0010015: root morphogenesis6.41E-03
123GO:0009965: leaf morphogenesis6.78E-03
124GO:0006952: defense response7.10E-03
125GO:0006108: malate metabolic process7.70E-03
126GO:0009809: lignin biosynthetic process8.14E-03
127GO:0006486: protein glycosylation8.14E-03
128GO:0009933: meristem structural organization8.37E-03
129GO:0009266: response to temperature stimulus8.37E-03
130GO:0070588: calcium ion transmembrane transport9.07E-03
131GO:0010053: root epidermal cell differentiation9.07E-03
132GO:0034976: response to endoplasmic reticulum stress9.79E-03
133GO:0006071: glycerol metabolic process9.79E-03
134GO:0048316: seed development9.95E-03
135GO:0045454: cell redox homeostasis1.03E-02
136GO:0007010: cytoskeleton organization1.05E-02
137GO:0010187: negative regulation of seed germination1.05E-02
138GO:0006487: protein N-linked glycosylation1.05E-02
139GO:0006810: transport1.16E-02
140GO:0003333: amino acid transmembrane transport1.21E-02
141GO:0098542: defense response to other organism1.21E-02
142GO:0030433: ubiquitin-dependent ERAD pathway1.29E-02
143GO:0031348: negative regulation of defense response1.29E-02
144GO:0006012: galactose metabolic process1.37E-02
145GO:0009306: protein secretion1.45E-02
146GO:0006508: proteolysis1.49E-02
147GO:0051028: mRNA transport1.54E-02
148GO:0016117: carotenoid biosynthetic process1.54E-02
149GO:0008033: tRNA processing1.62E-02
150GO:0034220: ion transmembrane transport1.62E-02
151GO:0006520: cellular amino acid metabolic process1.71E-02
152GO:0006662: glycerol ether metabolic process1.71E-02
153GO:0009749: response to glucose1.89E-02
154GO:0019252: starch biosynthetic process1.89E-02
155GO:0080156: mitochondrial mRNA modification1.99E-02
156GO:0002229: defense response to oomycetes1.99E-02
157GO:0042742: defense response to bacterium2.05E-02
158GO:0032502: developmental process2.08E-02
159GO:0030163: protein catabolic process2.18E-02
160GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.25E-02
161GO:0009617: response to bacterium2.40E-02
162GO:0010029: regulation of seed germination2.69E-02
163GO:0009816: defense response to bacterium, incompatible interaction2.69E-02
164GO:0009607: response to biotic stimulus2.69E-02
165GO:0006974: cellular response to DNA damage stimulus2.80E-02
166GO:0009611: response to wounding2.84E-02
167GO:0006950: response to stress2.90E-02
168GO:0048481: plant ovule development3.12E-02
169GO:0030244: cellulose biosynthetic process3.12E-02
170GO:0009832: plant-type cell wall biogenesis3.23E-02
171GO:0010311: lateral root formation3.23E-02
172GO:0009407: toxin catabolic process3.35E-02
173GO:0006468: protein phosphorylation3.60E-02
174GO:0034599: cellular response to oxidative stress3.81E-02
175GO:0006839: mitochondrial transport4.05E-02
176GO:0016192: vesicle-mediated transport4.06E-02
177GO:0042542: response to hydrogen peroxide4.30E-02
178GO:0051707: response to other organism4.42E-02
179GO:0009644: response to high light intensity4.68E-02
180GO:0006886: intracellular protein transport4.75E-02
181GO:0009636: response to toxic substance4.80E-02
RankGO TermAdjusted P value
1GO:0051670: inulinase activity0.00E+00
2GO:0004622: lysophospholipase activity0.00E+00
3GO:0015930: glutamate synthase activity0.00E+00
4GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
5GO:0003846: 2-acylglycerol O-acyltransferase activity0.00E+00
6GO:0016034: maleylacetoacetate isomerase activity0.00E+00
7GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
8GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
9GO:0005524: ATP binding3.61E-07
10GO:0003994: aconitate hydratase activity1.93E-06
11GO:0051539: 4 iron, 4 sulfur cluster binding3.52E-06
12GO:0000104: succinate dehydrogenase activity4.82E-05
13GO:0102391: decanoate--CoA ligase activity9.88E-05
14GO:0004467: long-chain fatty acid-CoA ligase activity1.31E-04
15GO:0016831: carboxy-lyase activity1.31E-04
16GO:0005090: Sar guanyl-nucleotide exchange factor activity2.02E-04
17GO:0051669: fructan beta-fructosidase activity2.02E-04
18GO:0031219: levanase activity2.02E-04
19GO:0016768: spermine synthase activity2.02E-04
20GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.02E-04
21GO:0016041: glutamate synthase (ferredoxin) activity2.02E-04
22GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity2.02E-04
23GO:0051082: unfolded protein binding2.59E-04
24GO:0008171: O-methyltransferase activity3.54E-04
25GO:0019172: glyoxalase III activity4.52E-04
26GO:0004061: arylformamidase activity4.52E-04
27GO:0004775: succinate-CoA ligase (ADP-forming) activity4.52E-04
28GO:0015036: disulfide oxidoreductase activity4.52E-04
29GO:0008517: folic acid transporter activity4.52E-04
30GO:0048531: beta-1,3-galactosyltransferase activity4.52E-04
31GO:0004776: succinate-CoA ligase (GDP-forming) activity4.52E-04
32GO:0004617: phosphoglycerate dehydrogenase activity4.52E-04
33GO:0004766: spermidine synthase activity4.52E-04
34GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity4.52E-04
35GO:0015152: glucose-6-phosphate transmembrane transporter activity4.52E-04
36GO:0005096: GTPase activator activity4.55E-04
37GO:0004022: alcohol dehydrogenase (NAD) activity5.33E-04
38GO:0005315: inorganic phosphate transmembrane transporter activity5.33E-04
39GO:0003840: gamma-glutamyltransferase activity7.36E-04
40GO:0036374: glutathione hydrolase activity7.36E-04
41GO:0004383: guanylate cyclase activity7.36E-04
42GO:0016805: dipeptidase activity7.36E-04
43GO:0071917: triose-phosphate transmembrane transporter activity7.36E-04
44GO:0000030: mannosyltransferase activity7.36E-04
45GO:0005093: Rab GDP-dissociation inhibitor activity7.36E-04
46GO:0001653: peptide receptor activity1.05E-03
47GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.05E-03
48GO:0015181: arginine transmembrane transporter activity1.05E-03
49GO:0004449: isocitrate dehydrogenase (NAD+) activity1.05E-03
50GO:0042299: lupeol synthase activity1.05E-03
51GO:0015189: L-lysine transmembrane transporter activity1.05E-03
52GO:0008276: protein methyltransferase activity1.05E-03
53GO:0004470: malic enzyme activity1.40E-03
54GO:0005313: L-glutamate transmembrane transporter activity1.40E-03
55GO:0016004: phospholipase activator activity1.40E-03
56GO:0009916: alternative oxidase activity1.40E-03
57GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor1.40E-03
58GO:0016866: intramolecular transferase activity1.40E-03
59GO:0015120: phosphoglycerate transmembrane transporter activity1.40E-03
60GO:0004737: pyruvate decarboxylase activity1.40E-03
61GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity1.40E-03
62GO:0005509: calcium ion binding1.41E-03
63GO:0010181: FMN binding1.72E-03
64GO:0005459: UDP-galactose transmembrane transporter activity1.78E-03
65GO:0008177: succinate dehydrogenase (ubiquinone) activity1.78E-03
66GO:0005496: steroid binding1.78E-03
67GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.78E-03
68GO:0051538: 3 iron, 4 sulfur cluster binding1.78E-03
69GO:0002020: protease binding1.78E-03
70GO:0008137: NADH dehydrogenase (ubiquinone) activity1.98E-03
71GO:0005215: transporter activity2.02E-03
72GO:0031593: polyubiquitin binding2.19E-03
73GO:0036402: proteasome-activating ATPase activity2.19E-03
74GO:0030976: thiamine pyrophosphate binding2.19E-03
75GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.63E-03
76GO:0004747: ribokinase activity2.63E-03
77GO:0003978: UDP-glucose 4-epimerase activity2.63E-03
78GO:0051020: GTPase binding2.63E-03
79GO:0051920: peroxiredoxin activity2.63E-03
80GO:0016491: oxidoreductase activity2.86E-03
81GO:0008320: protein transmembrane transporter activity3.09E-03
82GO:0004620: phospholipase activity3.09E-03
83GO:0008235: metalloexopeptidase activity3.09E-03
84GO:0005507: copper ion binding3.22E-03
85GO:0015297: antiporter activity3.37E-03
86GO:0008865: fructokinase activity3.59E-03
87GO:0016209: antioxidant activity3.59E-03
88GO:0016301: kinase activity3.86E-03
89GO:0015238: drug transmembrane transporter activity3.89E-03
90GO:0050897: cobalt ion binding4.28E-03
91GO:0030145: manganese ion binding4.28E-03
92GO:0008889: glycerophosphodiester phosphodiesterase activity4.65E-03
93GO:0015174: basic amino acid transmembrane transporter activity5.21E-03
94GO:0047617: acyl-CoA hydrolase activity5.21E-03
95GO:0016887: ATPase activity5.77E-03
96GO:0030234: enzyme regulator activity5.80E-03
97GO:0004177: aminopeptidase activity6.41E-03
98GO:0008559: xenobiotic-transporting ATPase activity6.41E-03
99GO:0051287: NAD binding7.31E-03
100GO:0015114: phosphate ion transmembrane transporter activity7.70E-03
101GO:0005388: calcium-transporting ATPase activity7.70E-03
102GO:0017025: TBP-class protein binding9.07E-03
103GO:0051536: iron-sulfur cluster binding1.05E-02
104GO:0003954: NADH dehydrogenase activity1.05E-02
105GO:0043424: protein histidine kinase binding1.13E-02
106GO:0005515: protein binding1.17E-02
107GO:0004298: threonine-type endopeptidase activity1.21E-02
108GO:0003756: protein disulfide isomerase activity1.45E-02
109GO:0047134: protein-disulfide reductase activity1.54E-02
110GO:0005199: structural constituent of cell wall1.71E-02
111GO:0008536: Ran GTPase binding1.71E-02
112GO:0004791: thioredoxin-disulfide reductase activity1.80E-02
113GO:0048038: quinone binding1.99E-02
114GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.18E-02
115GO:0008194: UDP-glycosyltransferase activity2.25E-02
116GO:0005200: structural constituent of cytoskeleton2.38E-02
117GO:0016597: amino acid binding2.48E-02
118GO:0015250: water channel activity2.58E-02
119GO:0009931: calcium-dependent protein serine/threonine kinase activity2.80E-02
120GO:0030247: polysaccharide binding2.90E-02
121GO:0004683: calmodulin-dependent protein kinase activity2.90E-02
122GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.12E-02
123GO:0004601: peroxidase activity3.12E-02
124GO:0004222: metalloendopeptidase activity3.35E-02
125GO:0004674: protein serine/threonine kinase activity3.61E-02
126GO:0003697: single-stranded DNA binding3.69E-02
127GO:0008233: peptidase activity3.79E-02
128GO:0030246: carbohydrate binding4.00E-02
129GO:0004364: glutathione transferase activity4.30E-02
130GO:0005516: calmodulin binding4.58E-02
131GO:0043621: protein self-association4.68E-02
132GO:0051537: 2 iron, 2 sulfur cluster binding4.68E-02
133GO:0016757: transferase activity, transferring glycosyl groups4.76E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0046862: chromoplast membrane0.00E+00
3GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
4GO:0005829: cytosol4.40E-10
5GO:0005783: endoplasmic reticulum1.74E-08
6GO:0005886: plasma membrane1.98E-07
7GO:0005774: vacuolar membrane3.58E-07
8GO:0000502: proteasome complex1.03E-05
9GO:0005618: cell wall2.49E-05
10GO:0005773: vacuole8.48E-05
11GO:0016020: membrane9.42E-05
12GO:0009506: plasmodesma1.00E-04
13GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.67E-04
14GO:0034245: mitochondrial DNA-directed RNA polymerase complex2.02E-04
15GO:0008540: proteasome regulatory particle, base subcomplex3.01E-04
16GO:0005794: Golgi apparatus3.61E-04
17GO:0031314: extrinsic component of mitochondrial inner membrane4.52E-04
18GO:0030134: ER to Golgi transport vesicle4.52E-04
19GO:0030176: integral component of endoplasmic reticulum membrane6.71E-04
20GO:0046861: glyoxysomal membrane7.36E-04
21GO:0009530: primary cell wall7.36E-04
22GO:0045271: respiratory chain complex I9.08E-04
23GO:0005789: endoplasmic reticulum membrane1.14E-03
24GO:0005747: mitochondrial respiratory chain complex I1.47E-03
25GO:0008250: oligosaccharyltransferase complex1.78E-03
26GO:0005798: Golgi-associated vesicle2.19E-03
27GO:0030127: COPII vesicle coat2.19E-03
28GO:0005777: peroxisome2.20E-03
29GO:0048046: apoplast2.63E-03
30GO:0005801: cis-Golgi network2.63E-03
31GO:0031597: cytosolic proteasome complex2.63E-03
32GO:0030173: integral component of Golgi membrane2.63E-03
33GO:0005743: mitochondrial inner membrane2.66E-03
34GO:0005788: endoplasmic reticulum lumen3.01E-03
35GO:0031595: nuclear proteasome complex3.09E-03
36GO:0045273: respiratory chain complex II3.59E-03
37GO:0005811: lipid particle4.10E-03
38GO:0000326: protein storage vacuole4.10E-03
39GO:0009514: glyoxysome4.10E-03
40GO:0008541: proteasome regulatory particle, lid subcomplex6.41E-03
41GO:0031966: mitochondrial membrane7.58E-03
42GO:0031969: chloroplast membrane8.18E-03
43GO:0005750: mitochondrial respiratory chain complex III8.37E-03
44GO:0005739: mitochondrion8.49E-03
45GO:0009570: chloroplast stroma1.05E-02
46GO:0070469: respiratory chain1.13E-02
47GO:0005839: proteasome core complex1.21E-02
48GO:0016021: integral component of membrane1.36E-02
49GO:0043231: intracellular membrane-bounded organelle1.52E-02
50GO:0005737: cytoplasm1.94E-02
51GO:0009536: plastid2.78E-02
52GO:0005643: nuclear pore3.12E-02
53GO:0000325: plant-type vacuole3.46E-02
54GO:0009507: chloroplast3.69E-02
55GO:0005730: nucleolus4.42E-02
56GO:0005856: cytoskeleton4.80E-02
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Gene type



Gene DE type