co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G05890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0006154: adenosine catabolic process	0.00E+00
5	GO:0090627: plant epidermal cell differentiation	0.00E+00
6	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
7	GO:0000476: maturation of 4.5S rRNA	1.60E-04
8	GO:0000967: rRNA 5'-end processing	1.60E-04
9	GO:0015808: L-alanine transport	1.60E-04
10	GO:0043266: regulation of potassium ion transport	1.60E-04
11	GO:0010480: microsporocyte differentiation	1.60E-04
12	GO:0031338: regulation of vesicle fusion	1.60E-04
13	GO:2000021: regulation of ion homeostasis	1.60E-04
14	GO:0006148: inosine catabolic process	1.60E-04
15	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	1.60E-04
16	GO:0010028: xanthophyll cycle	1.60E-04
17	GO:1903507: negative regulation of nucleic acid-templated transcription	2.97E-04
18	GO:0010541: acropetal auxin transport	3.65E-04
19	GO:0098712: L-glutamate import across plasma membrane	3.65E-04
20	GO:0016122: xanthophyll metabolic process	3.65E-04
21	GO:0010270: photosystem II oxygen evolving complex assembly	3.65E-04
22	GO:0015804: neutral amino acid transport	3.65E-04
23	GO:0034470: ncRNA processing	3.65E-04
24	GO:0055129: L-proline biosynthetic process	3.65E-04
25	GO:0008152: metabolic process	4.21E-04
26	GO:0010540: basipetal auxin transport	4.38E-04
27	GO:0010160: formation of animal organ boundary	5.97E-04
28	GO:0051176: positive regulation of sulfur metabolic process	5.97E-04
29	GO:0090630: activation of GTPase activity	5.97E-04
30	GO:2001295: malonyl-CoA biosynthetic process	5.97E-04
31	GO:0031022: nuclear migration along microfilament	5.97E-04
32	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.98E-04
33	GO:0080170: hydrogen peroxide transmembrane transport	8.53E-04
34	GO:0043481: anthocyanin accumulation in tissues in response to UV light	8.53E-04
35	GO:1901332: negative regulation of lateral root development	8.53E-04
36	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.53E-04
37	GO:0051639: actin filament network formation	8.53E-04
38	GO:1901601: strigolactone biosynthetic process	1.13E-03
39	GO:0051764: actin crosslink formation	1.13E-03
40	GO:0006085: acetyl-CoA biosynthetic process	1.13E-03
41	GO:0045727: positive regulation of translation	1.13E-03
42	GO:0015994: chlorophyll metabolic process	1.13E-03
43	GO:0010305: leaf vascular tissue pattern formation	1.17E-03
44	GO:0007018: microtubule-based movement	1.26E-03
45	GO:0045454: cell redox homeostasis	1.31E-03
46	GO:0048825: cotyledon development	1.35E-03
47	GO:0009904: chloroplast accumulation movement	1.43E-03
48	GO:0009435: NAD biosynthetic process	1.43E-03
49	GO:0010438: cellular response to sulfur starvation	1.43E-03
50	GO:0006828: manganese ion transport	1.76E-03
51	GO:0009913: epidermal cell differentiation	1.76E-03
52	GO:0060918: auxin transport	1.76E-03
53	GO:0000741: karyogamy	1.76E-03
54	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.76E-03
55	GO:0009759: indole glucosinolate biosynthetic process	1.76E-03
56	GO:0006561: proline biosynthetic process	1.76E-03
57	GO:0006751: glutathione catabolic process	1.76E-03
58	GO:0048827: phyllome development	1.76E-03
59	GO:0042549: photosystem II stabilization	1.76E-03
60	GO:0006633: fatty acid biosynthetic process	2.10E-03
61	GO:0009903: chloroplast avoidance movement	2.11E-03
62	GO:0015995: chlorophyll biosynthetic process	2.43E-03
63	GO:0048437: floral organ development	2.48E-03
64	GO:0010196: nonphotochemical quenching	2.48E-03
65	GO:1900057: positive regulation of leaf senescence	2.48E-03
66	GO:0051510: regulation of unidimensional cell growth	2.48E-03
67	GO:0043090: amino acid import	2.48E-03
68	GO:0032544: plastid translation	3.29E-03
69	GO:0009932: cell tip growth	3.29E-03
70	GO:0006098: pentose-phosphate shunt	3.72E-03
71	GO:0048507: meristem development	3.72E-03
72	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.72E-03
73	GO:0010206: photosystem II repair	3.72E-03
74	GO:0009060: aerobic respiration	3.72E-03
75	GO:0046685: response to arsenic-containing substance	3.72E-03
76	GO:0006779: porphyrin-containing compound biosynthetic process	4.17E-03
77	GO:0009640: photomorphogenesis	4.37E-03
78	GO:0009611: response to wounding	4.46E-03
79	GO:0006782: protoporphyrinogen IX biosynthetic process	4.64E-03
80	GO:0010215: cellulose microfibril organization	4.64E-03
81	GO:0009807: lignan biosynthetic process	5.12E-03
82	GO:0048229: gametophyte development	5.12E-03
83	GO:0006816: calcium ion transport	5.12E-03
84	GO:0031347: regulation of defense response	5.28E-03
85	GO:0042538: hyperosmotic salinity response	5.48E-03
86	GO:0005983: starch catabolic process	5.62E-03
87	GO:0002213: defense response to insect	5.62E-03
88	GO:0008361: regulation of cell size	5.62E-03
89	GO:0006364: rRNA processing	5.88E-03
90	GO:0010588: cotyledon vascular tissue pattern formation	6.14E-03
91	GO:0010229: inflorescence development	6.14E-03
92	GO:0018107: peptidyl-threonine phosphorylation	6.14E-03
93	GO:0009718: anthocyanin-containing compound biosynthetic process	6.14E-03
94	GO:0010075: regulation of meristem growth	6.14E-03
95	GO:0006094: gluconeogenesis	6.14E-03
96	GO:0055085: transmembrane transport	6.20E-03
97	GO:0010223: secondary shoot formation	6.67E-03
98	GO:0009934: regulation of meristem structural organization	6.67E-03
99	GO:0009825: multidimensional cell growth	7.22E-03
100	GO:0010053: root epidermal cell differentiation	7.22E-03
101	GO:0006636: unsaturated fatty acid biosynthetic process	7.79E-03
102	GO:0006833: water transport	7.79E-03
103	GO:0000162: tryptophan biosynthetic process	7.79E-03
104	GO:0051017: actin filament bundle assembly	8.38E-03
105	GO:0006629: lipid metabolic process	8.87E-03
106	GO:0016575: histone deacetylation	8.97E-03
107	GO:0048364: root development	9.36E-03
108	GO:0009753: response to jasmonic acid	9.70E-03
109	GO:0016226: iron-sulfur cluster assembly	1.02E-02
110	GO:0048443: stamen development	1.15E-02
111	GO:0019722: calcium-mediated signaling	1.15E-02
112	GO:0007165: signal transduction	1.21E-02
113	GO:0080022: primary root development	1.29E-02
114	GO:0034220: ion transmembrane transport	1.29E-02
115	GO:0010087: phloem or xylem histogenesis	1.29E-02
116	GO:0048653: anther development	1.29E-02
117	GO:0009958: positive gravitropism	1.36E-02
118	GO:0006662: glycerol ether metabolic process	1.36E-02
119	GO:0010197: polar nucleus fusion	1.36E-02
120	GO:0009741: response to brassinosteroid	1.36E-02
121	GO:0009734: auxin-activated signaling pathway	1.37E-02
122	GO:0009791: post-embryonic development	1.50E-02
123	GO:0071554: cell wall organization or biogenesis	1.58E-02
124	GO:0030163: protein catabolic process	1.73E-02
125	GO:0009639: response to red or far red light	1.81E-02
126	GO:0009416: response to light stimulus	1.84E-02
127	GO:0071805: potassium ion transmembrane transport	1.89E-02
128	GO:0007267: cell-cell signaling	1.89E-02
129	GO:0009911: positive regulation of flower development	2.05E-02
130	GO:0001666: response to hypoxia	2.05E-02
131	GO:0016126: sterol biosynthetic process	2.05E-02
132	GO:0045893: positive regulation of transcription, DNA-templated	2.19E-02
133	GO:0005975: carbohydrate metabolic process	2.35E-02
134	GO:0009817: defense response to fungus, incompatible interaction	2.47E-02
135	GO:0010311: lateral root formation	2.56E-02
136	GO:0010218: response to far red light	2.65E-02
137	GO:0009631: cold acclimation	2.74E-02
138	GO:0048527: lateral root development	2.74E-02
139	GO:0009910: negative regulation of flower development	2.74E-02
140	GO:0009867: jasmonic acid mediated signaling pathway	2.93E-02
141	GO:0009637: response to blue light	2.93E-02
142	GO:0046777: protein autophosphorylation	2.98E-02
143	GO:0034599: cellular response to oxidative stress	3.02E-02
144	GO:0030001: metal ion transport	3.21E-02
145	GO:0006631: fatty acid metabolic process	3.31E-02
146	GO:0009926: auxin polar transport	3.51E-02
147	GO:0006855: drug transmembrane transport	3.91E-02
148	GO:0006813: potassium ion transport	4.34E-02
149	GO:0006096: glycolytic process	4.88E-02
150	GO:0048367: shoot system development	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0008987: quinolinate synthetase A activity	0.00E+00
3	GO:0051721: protein phosphatase 2A binding	0.00E+00
4	GO:0042903: tubulin deacetylase activity	0.00E+00
5	GO:0043014: alpha-tubulin binding	0.00E+00
6	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
7	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
8	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
9	GO:0004349: glutamate 5-kinase activity	1.60E-04
10	GO:0050308: sugar-phosphatase activity	1.60E-04
11	GO:0004350: glutamate-5-semialdehyde dehydrogenase activity	1.60E-04
12	GO:0019203: carbohydrate phosphatase activity	1.60E-04
13	GO:0047622: adenosine nucleosidase activity	1.60E-04
14	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	1.60E-04
15	GO:0015194: L-serine transmembrane transporter activity	1.60E-04
16	GO:0015180: L-alanine transmembrane transporter activity	3.65E-04
17	GO:0010283: pinoresinol reductase activity	3.65E-04
18	GO:0016868: intramolecular transferase activity, phosphotransferases	3.65E-04
19	GO:0003839: gamma-glutamylcyclotransferase activity	3.65E-04
20	GO:0005094: Rho GDP-dissociation inhibitor activity	3.65E-04
21	GO:0047724: inosine nucleosidase activity	3.65E-04
22	GO:0004312: fatty acid synthase activity	3.65E-04
23	GO:0008253: 5'-nucleotidase activity	5.97E-04
24	GO:0004148: dihydrolipoyl dehydrogenase activity	5.97E-04
25	GO:0015193: L-proline transmembrane transporter activity	5.97E-04
26	GO:0004075: biotin carboxylase activity	5.97E-04
27	GO:0016805: dipeptidase activity	5.97E-04
28	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	5.97E-04
29	GO:0004180: carboxypeptidase activity	5.97E-04
30	GO:0003714: transcription corepressor activity	6.05E-04
31	GO:0005528: FK506 binding	6.05E-04
32	GO:0048487: beta-tubulin binding	8.53E-04
33	GO:0001872: (1->3)-beta-D-glucan binding	8.53E-04
34	GO:0015186: L-glutamine transmembrane transporter activity	8.53E-04
35	GO:0003878: ATP citrate synthase activity	8.53E-04
36	GO:0019201: nucleotide kinase activity	8.53E-04
37	GO:0015175: neutral amino acid transmembrane transporter activity	8.53E-04
38	GO:0005313: L-glutamate transmembrane transporter activity	1.13E-03
39	GO:0004506: squalene monooxygenase activity	1.13E-03
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.13E-03
41	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.13E-03
42	GO:0004871: signal transducer activity	1.41E-03
43	GO:0017137: Rab GTPase binding	1.43E-03
44	GO:0003989: acetyl-CoA carboxylase activity	1.43E-03
45	GO:0004518: nuclease activity	1.53E-03
46	GO:0042578: phosphoric ester hydrolase activity	1.76E-03
47	GO:2001070: starch binding	1.76E-03
48	GO:0004332: fructose-bisphosphate aldolase activity	1.76E-03
49	GO:0004017: adenylate kinase activity	2.11E-03
50	GO:0005096: GTPase activator activity	2.82E-03
51	GO:0004033: aldo-keto reductase (NADP) activity	2.88E-03
52	GO:0043022: ribosome binding	2.88E-03
53	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.20E-03
54	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.29E-03
55	GO:0005524: ATP binding	3.36E-03
56	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.72E-03
57	GO:0016787: hydrolase activity	3.89E-03
58	GO:0005384: manganese ion transmembrane transporter activity	4.17E-03
59	GO:0008047: enzyme activator activity	4.64E-03
60	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.09E-03
61	GO:0004565: beta-galactosidase activity	6.14E-03
62	GO:0010329: auxin efflux transmembrane transporter activity	6.14E-03
63	GO:0008081: phosphoric diester hydrolase activity	6.14E-03
64	GO:0015095: magnesium ion transmembrane transporter activity	6.14E-03
65	GO:0003777: microtubule motor activity	6.51E-03
66	GO:0008266: poly(U) RNA binding	6.67E-03
67	GO:0004407: histone deacetylase activity	8.38E-03
68	GO:0015035: protein disulfide oxidoreductase activity	8.62E-03
69	GO:0015079: potassium ion transmembrane transporter activity	8.97E-03
70	GO:0004707: MAP kinase activity	9.59E-03
71	GO:0033612: receptor serine/threonine kinase binding	9.59E-03
72	GO:0016829: lyase activity	1.14E-02
73	GO:0047134: protein-disulfide reductase activity	1.22E-02
74	GO:0050662: coenzyme binding	1.43E-02
75	GO:0004791: thioredoxin-disulfide reductase activity	1.43E-02
76	GO:0046872: metal ion binding	1.44E-02
77	GO:0008017: microtubule binding	1.52E-02
78	GO:0048038: quinone binding	1.58E-02
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.73E-02
80	GO:0051015: actin filament binding	1.73E-02
81	GO:0016301: kinase activity	1.84E-02
82	GO:0042802: identical protein binding	1.85E-02
83	GO:0016413: O-acetyltransferase activity	1.97E-02
84	GO:0015250: water channel activity	2.05E-02
85	GO:0030247: polysaccharide binding	2.30E-02
86	GO:0008236: serine-type peptidase activity	2.39E-02
87	GO:0015238: drug transmembrane transporter activity	2.56E-02
88	GO:0050660: flavin adenine dinucleotide binding	2.60E-02
89	GO:0003746: translation elongation factor activity	2.93E-02
90	GO:0051539: 4 iron, 4 sulfur cluster binding	3.21E-02
91	GO:0005515: protein binding	3.39E-02
92	GO:0035091: phosphatidylinositol binding	3.71E-02
93	GO:0043621: protein self-association	3.71E-02
94	GO:0015293: symporter activity	3.81E-02
95	GO:0016298: lipase activity	4.44E-02
96	GO:0015171: amino acid transmembrane transporter activity	4.66E-02
97	GO:0031625: ubiquitin protein ligase binding	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0009930: longitudinal side of cell surface	0.00E+00
2	GO:0009507: chloroplast	8.20E-11
3	GO:0009570: chloroplast stroma	7.95E-10
4	GO:0009941: chloroplast envelope	1.18E-05
5	GO:0009543: chloroplast thylakoid lumen	2.20E-04
6	GO:0009534: chloroplast thylakoid	3.03E-04
7	GO:0031977: thylakoid lumen	4.77E-04
8	GO:0009897: external side of plasma membrane	5.97E-04
9	GO:0016328: lateral plasma membrane	5.97E-04
10	GO:0032432: actin filament bundle	8.53E-04
11	GO:0009346: citrate lyase complex	8.53E-04
12	GO:0005871: kinesin complex	1.01E-03
13	GO:0009505: plant-type cell wall	1.35E-03
14	GO:0005886: plasma membrane	1.42E-03
15	GO:0009533: chloroplast stromal thylakoid	2.48E-03
16	GO:0046658: anchored component of plasma membrane	3.37E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.72E-03
18	GO:0008180: COP9 signalosome	3.72E-03
19	GO:0009535: chloroplast thylakoid membrane	4.25E-03
20	GO:0005884: actin filament	5.12E-03
21	GO:0009579: thylakoid	5.66E-03
22	GO:0030095: chloroplast photosystem II	6.67E-03
23	GO:0042651: thylakoid membrane	8.97E-03
24	GO:0010287: plastoglobule	9.93E-03
25	GO:0048046: apoplast	1.09E-02
26	GO:0005770: late endosome	1.36E-02
27	GO:0005773: vacuole	2.25E-02
28	GO:0009506: plasmodesma	2.42E-02
29	GO:0019005: SCF ubiquitin ligase complex	2.47E-02
30	GO:0005874: microtubule	2.70E-02
31	GO:0031969: chloroplast membrane	2.79E-02
32	GO:0000502: proteasome complex	4.34E-02