Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G05860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901698: response to nitrogen compound0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0000372: Group I intron splicing0.00E+00
4GO:0006723: cuticle hydrocarbon biosynthetic process2.41E-05
5GO:0034628: 'de novo' NAD biosynthetic process from aspartate2.41E-05
6GO:0016119: carotene metabolic process2.41E-05
7GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.16E-05
8GO:0010086: embryonic root morphogenesis6.16E-05
9GO:0016560: protein import into peroxisome matrix, docking6.16E-05
10GO:0009741: response to brassinosteroid9.62E-05
11GO:0051176: positive regulation of sulfur metabolic process1.09E-04
12GO:0043447: alkane biosynthetic process1.09E-04
13GO:0071705: nitrogen compound transport1.09E-04
14GO:0010623: programmed cell death involved in cell development1.09E-04
15GO:0006515: misfolded or incompletely synthesized protein catabolic process1.62E-04
16GO:0007231: osmosensory signaling pathway1.62E-04
17GO:0071329: cellular response to sucrose stimulus1.62E-04
18GO:0071249: cellular response to nitrate2.21E-04
19GO:0033500: carbohydrate homeostasis2.21E-04
20GO:0042991: transcription factor import into nucleus2.21E-04
21GO:0016123: xanthophyll biosynthetic process2.84E-04
22GO:0009435: NAD biosynthetic process2.84E-04
23GO:0006564: L-serine biosynthetic process2.84E-04
24GO:0006354: DNA-templated transcription, elongation3.51E-04
25GO:0016554: cytidine to uridine editing3.51E-04
26GO:0048831: regulation of shoot system development3.51E-04
27GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.51E-04
28GO:0048509: regulation of meristem development4.20E-04
29GO:0051510: regulation of unidimensional cell growth4.92E-04
30GO:0008272: sulfate transport4.92E-04
31GO:0009736: cytokinin-activated signaling pathway5.25E-04
32GO:0008610: lipid biosynthetic process5.68E-04
33GO:0006402: mRNA catabolic process5.68E-04
34GO:0000373: Group II intron splicing7.25E-04
35GO:0009060: aerobic respiration7.25E-04
36GO:0009742: brassinosteroid mediated signaling pathway7.78E-04
37GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process8.07E-04
38GO:1900865: chloroplast RNA modification8.07E-04
39GO:0016485: protein processing9.78E-04
40GO:0015706: nitrate transport1.07E-03
41GO:2000028: regulation of photoperiodism, flowering1.16E-03
42GO:0010167: response to nitrate1.35E-03
43GO:0006833: water transport1.45E-03
44GO:0010025: wax biosynthetic process1.45E-03
45GO:0009116: nucleoside metabolic process1.55E-03
46GO:0006418: tRNA aminoacylation for protein translation1.65E-03
47GO:0009826: unidimensional cell growth1.81E-03
48GO:0016226: iron-sulfur cluster assembly1.87E-03
49GO:0040007: growth1.98E-03
50GO:0034220: ion transmembrane transport2.33E-03
51GO:0042335: cuticle development2.33E-03
52GO:0009791: post-embryonic development2.70E-03
53GO:0048825: cotyledon development2.70E-03
54GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.82E-03
55GO:0048235: pollen sperm cell differentiation2.95E-03
56GO:0006629: lipid metabolic process3.41E-03
57GO:0010029: regulation of seed germination3.76E-03
58GO:0016311: dephosphorylation4.20E-03
59GO:0048481: plant ovule development4.34E-03
60GO:0000160: phosphorelay signal transduction system4.49E-03
61GO:0048527: lateral root development4.80E-03
62GO:0009640: photomorphogenesis6.08E-03
63GO:0051603: proteolysis involved in cellular protein catabolic process7.65E-03
64GO:0006096: glycolytic process8.40E-03
65GO:0009626: plant-type hypersensitive response8.77E-03
66GO:0009740: gibberellic acid mediated signaling pathway9.16E-03
67GO:0009414: response to water deprivation1.19E-02
68GO:0016036: cellular response to phosphate starvation1.34E-02
69GO:0040008: regulation of growth1.36E-02
70GO:0007166: cell surface receptor signaling pathway1.54E-02
71GO:0055114: oxidation-reduction process1.54E-02
72GO:0046777: protein autophosphorylation2.34E-02
73GO:0006468: protein phosphorylation2.49E-02
74GO:0006869: lipid transport2.71E-02
75GO:0006397: mRNA processing3.04E-02
76GO:0048364: root development3.04E-02
77GO:0009873: ethylene-activated signaling pathway3.54E-02
78GO:0009908: flower development4.13E-02
RankGO TermAdjusted P value
1GO:0009885: transmembrane histidine kinase cytokinin receptor activity0.00E+00
2GO:0019955: cytokine binding0.00E+00
3GO:0008987: quinolinate synthetase A activity0.00E+00
4GO:0004822: isoleucine-tRNA ligase activity0.00E+00
5GO:0010291: carotene beta-ring hydroxylase activity6.16E-05
6GO:0004617: phosphoglycerate dehydrogenase activity6.16E-05
7GO:0009884: cytokinin receptor activity6.16E-05
8GO:0005034: osmosensor activity1.09E-04
9GO:0002161: aminoacyl-tRNA editing activity1.09E-04
10GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.21E-04
11GO:0019899: enzyme binding4.92E-04
12GO:0008047: enzyme activator activity8.92E-04
13GO:0004673: protein histidine kinase activity8.92E-04
14GO:0000049: tRNA binding1.07E-03
15GO:0000155: phosphorelay sensor kinase activity1.16E-03
16GO:0004022: alcohol dehydrogenase (NAD) activity1.16E-03
17GO:0003723: RNA binding1.42E-03
18GO:0043424: protein histidine kinase binding1.65E-03
19GO:0004176: ATP-dependent peptidase activity1.76E-03
20GO:0004812: aminoacyl-tRNA ligase activity2.21E-03
21GO:0019901: protein kinase binding2.70E-03
22GO:0004197: cysteine-type endopeptidase activity2.95E-03
23GO:0004518: nuclease activity2.95E-03
24GO:0016597: amino acid binding3.49E-03
25GO:0015250: water channel activity3.63E-03
26GO:0004721: phosphoprotein phosphatase activity4.05E-03
27GO:0008236: serine-type peptidase activity4.20E-03
28GO:0016787: hydrolase activity4.90E-03
29GO:0003993: acid phosphatase activity5.26E-03
30GO:0051539: 4 iron, 4 sulfur cluster binding5.59E-03
31GO:0051287: NAD binding6.94E-03
32GO:0003899: DNA-directed 5'-3' RNA polymerase activity7.47E-03
33GO:0016298: lipase activity7.65E-03
34GO:0008234: cysteine-type peptidase activity8.02E-03
35GO:0005506: iron ion binding1.20E-02
36GO:0004252: serine-type endopeptidase activity1.20E-02
37GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.34E-02
38GO:0016491: oxidoreductase activity1.61E-02
39GO:0042802: identical protein binding1.66E-02
40GO:0004842: ubiquitin-protein transferase activity1.69E-02
41GO:0004672: protein kinase activity1.80E-02
42GO:0003729: mRNA binding1.82E-02
43GO:0003677: DNA binding1.95E-02
44GO:0042803: protein homodimerization activity2.62E-02
45GO:0004722: protein serine/threonine phosphatase activity2.71E-02
46GO:0004519: endonuclease activity3.13E-02
47GO:0008270: zinc ion binding3.58E-02
48GO:0008289: lipid binding3.73E-02
49GO:0003700: transcription factor activity, sequence-specific DNA binding4.08E-02
RankGO TermAdjusted P value
1GO:0043233: organelle lumen0.00E+00
2GO:0000428: DNA-directed RNA polymerase complex2.41E-05
3GO:0005782: peroxisomal matrix1.09E-04
4GO:0030529: intracellular ribonucleoprotein complex1.81E-04
5GO:0009570: chloroplast stroma1.05E-03
6GO:0005764: lysosome1.25E-03
7GO:0009532: plastid stroma1.76E-03
8GO:0009295: nucleoid3.35E-03
9GO:0000325: plant-type vacuole4.80E-03
10GO:0005615: extracellular space1.52E-02
11GO:0005789: endoplasmic reticulum membrane1.87E-02
12GO:0031969: chloroplast membrane2.23E-02
13GO:0005887: integral component of plasma membrane3.66E-02
14GO:0005576: extracellular region3.92E-02
15GO:0005777: peroxisome4.89E-02
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Gene type



Gene DE type