GO Enrichment Analysis of Co-expressed Genes with
AT5G04790
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 2 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 3 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 4 | GO:0015979: photosynthesis | 1.33E-33 |
| 5 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.99E-10 |
| 6 | GO:0018298: protein-chromophore linkage | 1.92E-08 |
| 7 | GO:0010196: nonphotochemical quenching | 1.15E-07 |
| 8 | GO:0042742: defense response to bacterium | 3.72E-07 |
| 9 | GO:0015995: chlorophyll biosynthetic process | 9.52E-07 |
| 10 | GO:0010207: photosystem II assembly | 1.93E-06 |
| 11 | GO:2000122: negative regulation of stomatal complex development | 4.21E-06 |
| 12 | GO:0010037: response to carbon dioxide | 4.21E-06 |
| 13 | GO:0015976: carbon utilization | 4.21E-06 |
| 14 | GO:0009735: response to cytokinin | 6.22E-06 |
| 15 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.15E-05 |
| 16 | GO:0010027: thylakoid membrane organization | 3.08E-05 |
| 17 | GO:0010218: response to far red light | 5.46E-05 |
| 18 | GO:0010119: regulation of stomatal movement | 5.87E-05 |
| 19 | GO:0006106: fumarate metabolic process | 6.42E-05 |
| 20 | GO:1902458: positive regulation of stomatal opening | 6.42E-05 |
| 21 | GO:0009637: response to blue light | 6.74E-05 |
| 22 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.90E-05 |
| 23 | GO:0009773: photosynthetic electron transport in photosystem I | 7.90E-05 |
| 24 | GO:0010114: response to red light | 9.88E-05 |
| 25 | GO:0019253: reductive pentose-phosphate cycle | 1.23E-04 |
| 26 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 1.55E-04 |
| 27 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.55E-04 |
| 28 | GO:0090391: granum assembly | 2.63E-04 |
| 29 | GO:0006000: fructose metabolic process | 2.63E-04 |
| 30 | GO:0055070: copper ion homeostasis | 3.82E-04 |
| 31 | GO:0071484: cellular response to light intensity | 3.82E-04 |
| 32 | GO:0010109: regulation of photosynthesis | 5.10E-04 |
| 33 | GO:0009765: photosynthesis, light harvesting | 5.10E-04 |
| 34 | GO:0045727: positive regulation of translation | 5.10E-04 |
| 35 | GO:0009409: response to cold | 6.36E-04 |
| 36 | GO:0032543: mitochondrial translation | 6.45E-04 |
| 37 | GO:0045038: protein import into chloroplast thylakoid membrane | 6.45E-04 |
| 38 | GO:0031365: N-terminal protein amino acid modification | 6.45E-04 |
| 39 | GO:0034052: positive regulation of plant-type hypersensitive response | 6.45E-04 |
| 40 | GO:0010190: cytochrome b6f complex assembly | 7.90E-04 |
| 41 | GO:0009635: response to herbicide | 7.90E-04 |
| 42 | GO:0042549: photosystem II stabilization | 7.90E-04 |
| 43 | GO:0009817: defense response to fungus, incompatible interaction | 8.14E-04 |
| 44 | GO:0009658: chloroplast organization | 8.69E-04 |
| 45 | GO:0017148: negative regulation of translation | 9.40E-04 |
| 46 | GO:0010189: vitamin E biosynthetic process | 9.40E-04 |
| 47 | GO:0009645: response to low light intensity stimulus | 1.10E-03 |
| 48 | GO:0009772: photosynthetic electron transport in photosystem II | 1.10E-03 |
| 49 | GO:0055114: oxidation-reduction process | 1.21E-03 |
| 50 | GO:0043068: positive regulation of programmed cell death | 1.26E-03 |
| 51 | GO:2000070: regulation of response to water deprivation | 1.26E-03 |
| 52 | GO:0009644: response to high light intensity | 1.40E-03 |
| 53 | GO:0032544: plastid translation | 1.44E-03 |
| 54 | GO:0006002: fructose 6-phosphate metabolic process | 1.44E-03 |
| 55 | GO:0015996: chlorophyll catabolic process | 1.44E-03 |
| 56 | GO:0007186: G-protein coupled receptor signaling pathway | 1.44E-03 |
| 57 | GO:0010206: photosystem II repair | 1.62E-03 |
| 58 | GO:0009245: lipid A biosynthetic process | 1.62E-03 |
| 59 | GO:0019684: photosynthesis, light reaction | 2.21E-03 |
| 60 | GO:0000272: polysaccharide catabolic process | 2.21E-03 |
| 61 | GO:0045037: protein import into chloroplast stroma | 2.42E-03 |
| 62 | GO:0006108: malate metabolic process | 2.64E-03 |
| 63 | GO:0006006: glucose metabolic process | 2.64E-03 |
| 64 | GO:0006094: gluconeogenesis | 2.64E-03 |
| 65 | GO:0005986: sucrose biosynthetic process | 2.64E-03 |
| 66 | GO:0046688: response to copper ion | 3.09E-03 |
| 67 | GO:0009416: response to light stimulus | 3.79E-03 |
| 68 | GO:0061077: chaperone-mediated protein folding | 4.08E-03 |
| 69 | GO:0009269: response to desiccation | 4.08E-03 |
| 70 | GO:0009814: defense response, incompatible interaction | 4.34E-03 |
| 71 | GO:0009411: response to UV | 4.60E-03 |
| 72 | GO:0000413: protein peptidyl-prolyl isomerization | 5.43E-03 |
| 73 | GO:0042631: cellular response to water deprivation | 5.43E-03 |
| 74 | GO:0042335: cuticle development | 5.43E-03 |
| 75 | GO:0010182: sugar mediated signaling pathway | 5.72E-03 |
| 76 | GO:0015986: ATP synthesis coupled proton transport | 6.01E-03 |
| 77 | GO:0019252: starch biosynthetic process | 6.31E-03 |
| 78 | GO:0042254: ribosome biogenesis | 6.60E-03 |
| 79 | GO:0006412: translation | 6.68E-03 |
| 80 | GO:0080167: response to karrikin | 8.04E-03 |
| 81 | GO:0009627: systemic acquired resistance | 9.22E-03 |
| 82 | GO:0042128: nitrate assimilation | 9.22E-03 |
| 83 | GO:0006869: lipid transport | 1.06E-02 |
| 84 | GO:0009631: cold acclimation | 1.14E-02 |
| 85 | GO:0016051: carbohydrate biosynthetic process | 1.22E-02 |
| 86 | GO:0006099: tricarboxylic acid cycle | 1.25E-02 |
| 87 | GO:0030001: metal ion transport | 1.33E-02 |
| 88 | GO:0006364: rRNA processing | 1.80E-02 |
| 89 | GO:0006096: glycolytic process | 2.02E-02 |
| 90 | GO:0009626: plant-type hypersensitive response | 2.12E-02 |
| 91 | GO:0009611: response to wounding | 2.16E-02 |
| 92 | GO:0009737: response to abscisic acid | 2.41E-02 |
| 93 | GO:0045893: positive regulation of transcription, DNA-templated | 2.43E-02 |
| 94 | GO:0006633: fatty acid biosynthetic process | 3.19E-02 |
| 95 | GO:0007623: circadian rhythm | 3.41E-02 |
| 96 | GO:0006508: proteolysis | 3.80E-02 |
| 97 | GO:0010468: regulation of gene expression | 3.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 2 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 3 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 4 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 5 | GO:0016168: chlorophyll binding | 1.10E-12 |
| 6 | GO:0031409: pigment binding | 1.62E-10 |
| 7 | GO:0003959: NADPH dehydrogenase activity | 7.07E-06 |
| 8 | GO:0019843: rRNA binding | 2.25E-05 |
| 9 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 6.42E-05 |
| 10 | GO:0004333: fumarate hydratase activity | 6.42E-05 |
| 11 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 6.42E-05 |
| 12 | GO:0004089: carbonate dehydratase activity | 1.07E-04 |
| 13 | GO:0008266: poly(U) RNA binding | 1.23E-04 |
| 14 | GO:0016630: protochlorophyllide reductase activity | 1.55E-04 |
| 15 | GO:0010297: heteropolysaccharide binding | 1.55E-04 |
| 16 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.55E-04 |
| 17 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.55E-04 |
| 18 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 2.63E-04 |
| 19 | GO:0004324: ferredoxin-NADP+ reductase activity | 2.63E-04 |
| 20 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 2.63E-04 |
| 21 | GO:0005509: calcium ion binding | 3.18E-04 |
| 22 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 3.82E-04 |
| 23 | GO:0031177: phosphopantetheine binding | 7.90E-04 |
| 24 | GO:0042578: phosphoric ester hydrolase activity | 7.90E-04 |
| 25 | GO:0000035: acyl binding | 9.40E-04 |
| 26 | GO:0004602: glutathione peroxidase activity | 9.40E-04 |
| 27 | GO:0051920: peroxiredoxin activity | 9.40E-04 |
| 28 | GO:0008235: metalloexopeptidase activity | 1.10E-03 |
| 29 | GO:0003735: structural constituent of ribosome | 1.24E-03 |
| 30 | GO:0016209: antioxidant activity | 1.26E-03 |
| 31 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.26E-03 |
| 32 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.51E-03 |
| 33 | GO:0004177: aminopeptidase activity | 2.21E-03 |
| 34 | GO:0005528: FK506 binding | 3.57E-03 |
| 35 | GO:0043424: protein histidine kinase binding | 3.82E-03 |
| 36 | GO:0022891: substrate-specific transmembrane transporter activity | 4.60E-03 |
| 37 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 5.72E-03 |
| 38 | GO:0050662: coenzyme binding | 6.01E-03 |
| 39 | GO:0050661: NADP binding | 1.33E-02 |
| 40 | GO:0046872: metal ion binding | 1.35E-02 |
| 41 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.54E-02 |
| 42 | GO:0005198: structural molecule activity | 1.58E-02 |
| 43 | GO:0051287: NAD binding | 1.66E-02 |
| 44 | GO:0008289: lipid binding | 1.66E-02 |
| 45 | GO:0005515: protein binding | 1.81E-02 |
| 46 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.76E-02 |
| 47 | GO:0005507: copper ion binding | 3.01E-02 |
| 48 | GO:0004601: peroxidase activity | 4.65E-02 |
| 49 | GO:0016788: hydrolase activity, acting on ester bonds | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.88E-49 |
| 3 | GO:0009579: thylakoid | 1.43E-42 |
| 4 | GO:0009534: chloroplast thylakoid | 1.49E-34 |
| 5 | GO:0009507: chloroplast | 1.88E-34 |
| 6 | GO:0009941: chloroplast envelope | 2.89E-30 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 2.25E-21 |
| 8 | GO:0031977: thylakoid lumen | 1.02E-17 |
| 9 | GO:0009570: chloroplast stroma | 4.49E-17 |
| 10 | GO:0010287: plastoglobule | 9.90E-14 |
| 11 | GO:0009522: photosystem I | 1.73E-11 |
| 12 | GO:0030095: chloroplast photosystem II | 8.17E-11 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 2.99E-10 |
| 14 | GO:0009523: photosystem II | 2.59E-09 |
| 15 | GO:0019898: extrinsic component of membrane | 2.59E-09 |
| 16 | GO:0010319: stromule | 6.50E-09 |
| 17 | GO:0030076: light-harvesting complex | 1.97E-08 |
| 18 | GO:0009517: PSII associated light-harvesting complex II | 4.21E-06 |
| 19 | GO:0009538: photosystem I reaction center | 2.83E-05 |
| 20 | GO:0009515: granal stacked thylakoid | 6.42E-05 |
| 21 | GO:0045239: tricarboxylic acid cycle enzyme complex | 6.42E-05 |
| 22 | GO:0009783: photosystem II antenna complex | 6.42E-05 |
| 23 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.55E-04 |
| 24 | GO:0030093: chloroplast photosystem I | 1.55E-04 |
| 25 | GO:0042651: thylakoid membrane | 1.95E-04 |
| 26 | GO:0048046: apoplast | 2.15E-04 |
| 27 | GO:0009528: plastid inner membrane | 2.63E-04 |
| 28 | GO:0005840: ribosome | 4.03E-04 |
| 29 | GO:0009527: plastid outer membrane | 5.10E-04 |
| 30 | GO:0055035: plastid thylakoid membrane | 6.45E-04 |
| 31 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 7.90E-04 |
| 32 | GO:0016020: membrane | 8.55E-04 |
| 33 | GO:0000311: plastid large ribosomal subunit | 2.42E-03 |
| 34 | GO:0009706: chloroplast inner membrane | 2.45E-03 |
| 35 | GO:0009508: plastid chromosome | 2.64E-03 |
| 36 | GO:0000312: plastid small ribosomal subunit | 2.87E-03 |
| 37 | GO:0015935: small ribosomal subunit | 4.08E-03 |
| 38 | GO:0009532: plastid stroma | 4.08E-03 |
| 39 | GO:0009295: nucleoid | 7.88E-03 |
| 40 | GO:0031969: chloroplast membrane | 8.04E-03 |
| 41 | GO:0009707: chloroplast outer membrane | 1.03E-02 |
| 42 | GO:0016021: integral component of membrane | 3.11E-02 |
| 43 | GO:0022627: cytosolic small ribosomal subunit | 4.16E-02 |