Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G04360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
2GO:0090627: plant epidermal cell differentiation0.00E+00
3GO:1905157: positive regulation of photosynthesis0.00E+00
4GO:0034757: negative regulation of iron ion transport1.77E-05
5GO:0015969: guanosine tetraphosphate metabolic process1.77E-05
6GO:0009933: meristem structural organization1.83E-05
7GO:0010271: regulation of chlorophyll catabolic process4.61E-05
8GO:0080117: secondary growth8.18E-05
9GO:2001295: malonyl-CoA biosynthetic process8.18E-05
10GO:0051639: actin filament network formation1.23E-04
11GO:0006552: leucine catabolic process1.69E-04
12GO:0009956: radial pattern formation1.69E-04
13GO:0051781: positive regulation of cell division1.69E-04
14GO:0051764: actin crosslink formation1.69E-04
15GO:0009631: cold acclimation1.87E-04
16GO:0016120: carotene biosynthetic process2.19E-04
17GO:0009913: epidermal cell differentiation2.72E-04
18GO:0048831: regulation of shoot system development2.72E-04
19GO:0009643: photosynthetic acclimation2.72E-04
20GO:0048509: regulation of meristem development3.27E-04
21GO:0030497: fatty acid elongation3.84E-04
22GO:0009827: plant-type cell wall modification5.05E-04
23GO:0018105: peptidyl-serine phosphorylation5.25E-04
24GO:0034765: regulation of ion transmembrane transport5.68E-04
25GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process6.32E-04
26GO:0045036: protein targeting to chloroplast6.99E-04
27GO:0010072: primary shoot apical meristem specification7.68E-04
28GO:1903507: negative regulation of nucleic acid-templated transcription7.68E-04
29GO:0071365: cellular response to auxin stimulus8.38E-04
30GO:0018107: peptidyl-threonine phosphorylation9.08E-04
31GO:0010540: basipetal auxin transport9.82E-04
32GO:0009825: multidimensional cell growth1.06E-03
33GO:0006636: unsaturated fatty acid biosynthetic process1.13E-03
34GO:0019762: glucosinolate catabolic process1.13E-03
35GO:0051017: actin filament bundle assembly1.21E-03
36GO:2000022: regulation of jasmonic acid mediated signaling pathway1.46E-03
37GO:0071215: cellular response to abscisic acid stimulus1.54E-03
38GO:0046777: protein autophosphorylation1.71E-03
39GO:0070417: cellular response to cold1.72E-03
40GO:0016117: carotenoid biosynthetic process1.72E-03
41GO:0042391: regulation of membrane potential1.81E-03
42GO:0010087: phloem or xylem histogenesis1.81E-03
43GO:0045489: pectin biosynthetic process1.90E-03
44GO:0010305: leaf vascular tissue pattern formation1.90E-03
45GO:0048825: cotyledon development2.09E-03
46GO:0009791: post-embryonic development2.09E-03
47GO:0009753: response to jasmonic acid2.51E-03
48GO:0071805: potassium ion transmembrane transport2.60E-03
49GO:0016126: sterol biosynthetic process2.80E-03
50GO:0010029: regulation of seed germination2.91E-03
51GO:0009816: defense response to bacterium, incompatible interaction2.91E-03
52GO:0009734: auxin-activated signaling pathway3.27E-03
53GO:0030244: cellulose biosynthetic process3.36E-03
54GO:0010311: lateral root formation3.47E-03
55GO:0000160: phosphorelay signal transduction system3.47E-03
56GO:0009834: plant-type secondary cell wall biogenesis3.59E-03
57GO:0009611: response to wounding4.20E-03
58GO:0035556: intracellular signal transduction4.34E-03
59GO:0009926: auxin polar transport4.68E-03
60GO:0009636: response to toxic substance5.07E-03
61GO:0009965: leaf morphogenesis5.07E-03
62GO:0031347: regulation of defense response5.34E-03
63GO:0006813: potassium ion transport5.75E-03
64GO:0009736: cytokinin-activated signaling pathway5.75E-03
65GO:0009909: regulation of flower development6.17E-03
66GO:0048367: shoot system development6.60E-03
67GO:0009845: seed germination9.06E-03
68GO:0006633: fatty acid biosynthetic process1.01E-02
69GO:0006413: translational initiation1.02E-02
70GO:0007623: circadian rhythm1.08E-02
71GO:0010150: leaf senescence1.08E-02
72GO:0010228: vegetative to reproductive phase transition of meristem1.11E-02
73GO:0007166: cell surface receptor signaling pathway1.18E-02
74GO:0006970: response to osmotic stress1.54E-02
75GO:0009737: response to abscisic acid1.78E-02
76GO:0009793: embryo development ending in seed dormancy1.93E-02
77GO:0048364: root development2.32E-02
78GO:0009735: response to cytokinin3.18E-02
79GO:0009738: abscisic acid-activated signaling pathway3.31E-02
80GO:0055085: transmembrane transport4.01E-02
81GO:0006457: protein folding4.07E-02
RankGO TermAdjusted P value
1GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
2GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
3GO:0016719: carotene 7,8-desaturase activity0.00E+00
4GO:0004075: biotin carboxylase activity9.97E-08
5GO:0070006: metalloaminopeptidase activity1.77E-05
6GO:0030941: chloroplast targeting sequence binding1.77E-05
7GO:0004485: methylcrotonoyl-CoA carboxylase activity1.77E-05
8GO:0009884: cytokinin receptor activity4.61E-05
9GO:0019172: glyoxalase III activity4.61E-05
10GO:0008728: GTP diphosphokinase activity4.61E-05
11GO:0004312: fatty acid synthase activity4.61E-05
12GO:0005034: osmosensor activity8.18E-05
13GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity8.18E-05
14GO:0022890: inorganic cation transmembrane transporter activity1.23E-04
15GO:0004506: squalene monooxygenase activity1.69E-04
16GO:0051861: glycolipid binding1.69E-04
17GO:0003989: acetyl-CoA carboxylase activity2.19E-04
18GO:0004462: lactoylglutathione lyase activity2.72E-04
19GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.27E-04
20GO:0019900: kinase binding3.27E-04
21GO:0005242: inward rectifier potassium channel activity3.27E-04
22GO:0004673: protein histidine kinase activity6.99E-04
23GO:0030234: enzyme regulator activity6.99E-04
24GO:0015386: potassium:proton antiporter activity7.68E-04
25GO:0004177: aminopeptidase activity7.68E-04
26GO:0005525: GTP binding8.97E-04
27GO:0008081: phosphoric diester hydrolase activity9.08E-04
28GO:0000155: phosphorelay sensor kinase activity9.08E-04
29GO:0042802: identical protein binding1.08E-03
30GO:0003714: transcription corepressor activity1.21E-03
31GO:0015079: potassium ion transmembrane transporter activity1.29E-03
32GO:0043424: protein histidine kinase binding1.29E-03
33GO:0005524: ATP binding1.54E-03
34GO:0005249: voltage-gated potassium channel activity1.81E-03
35GO:0030551: cyclic nucleotide binding1.81E-03
36GO:0015299: solute:proton antiporter activity2.00E-03
37GO:0019901: protein kinase binding2.09E-03
38GO:0004518: nuclease activity2.29E-03
39GO:0051015: actin filament binding2.39E-03
40GO:0016413: O-acetyltransferase activity2.70E-03
41GO:0009931: calcium-dependent protein serine/threonine kinase activity3.02E-03
42GO:0004683: calmodulin-dependent protein kinase activity3.13E-03
43GO:0050897: cobalt ion binding3.70E-03
44GO:0003746: translation elongation factor activity3.94E-03
45GO:0035091: phosphatidylinositol binding4.94E-03
46GO:0003779: actin binding7.19E-03
47GO:0005509: calcium ion binding7.65E-03
48GO:0005515: protein binding9.27E-03
49GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.02E-02
50GO:0046872: metal ion binding1.05E-02
51GO:0016301: kinase activity1.08E-02
52GO:0003743: translation initiation factor activity1.20E-02
53GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.27E-02
54GO:0050660: flavin adenine dinucleotide binding1.62E-02
55GO:0008289: lipid binding2.85E-02
56GO:0004674: protein serine/threonine kinase activity4.10E-02
57GO:0005516: calmodulin binding4.53E-02
RankGO TermAdjusted P value
1GO:0009509: chromoplast8.18E-05
2GO:0032432: actin filament bundle1.23E-04
3GO:0031359: integral component of chloroplast outer membrane3.84E-04
4GO:0005884: actin filament7.68E-04
5GO:0031969: chloroplast membrane1.60E-03
6GO:0009507: chloroplast2.57E-03
7GO:0019005: SCF ubiquitin ligase complex3.36E-03
8GO:0009707: chloroplast outer membrane3.36E-03
9GO:0005759: mitochondrial matrix1.01E-02
10GO:0005886: plasma membrane1.05E-02
11GO:0009570: chloroplast stroma1.24E-02
12GO:0005789: endoplasmic reticulum membrane1.27E-02
13GO:0005887: integral component of plasma membrane2.80E-02
14GO:0009941: chloroplast envelope3.92E-02
15GO:0005737: cytoplasm4.67E-02
16GO:0005802: trans-Golgi network4.74E-02
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Gene type



Gene DE type