Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G02160

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0042593: glucose homeostasis0.00E+00
3GO:0061157: mRNA destabilization0.00E+00
4GO:2000505: regulation of energy homeostasis0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0033494: ferulate metabolic process0.00E+00
7GO:2000121: regulation of removal of superoxide radicals0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:0016553: base conversion or substitution editing0.00E+00
10GO:0005996: monosaccharide metabolic process0.00E+00
11GO:0015979: photosynthesis1.46E-25
12GO:0009735: response to cytokinin2.61E-14
13GO:0009773: photosynthetic electron transport in photosystem I8.69E-14
14GO:0042254: ribosome biogenesis2.03E-07
15GO:0009768: photosynthesis, light harvesting in photosystem I8.43E-07
16GO:0015976: carbon utilization1.68E-06
17GO:0015995: chlorophyll biosynthetic process1.70E-06
18GO:0010207: photosystem II assembly9.60E-06
19GO:0010196: nonphotochemical quenching1.90E-05
20GO:0009645: response to low light intensity stimulus1.90E-05
21GO:0006412: translation3.02E-05
22GO:0018298: protein-chromophore linkage3.67E-05
23GO:0010206: photosystem II repair5.37E-05
24GO:0080170: hydrogen peroxide transmembrane transport8.00E-05
25GO:0009409: response to cold8.51E-05
26GO:0042742: defense response to bacterium1.01E-04
27GO:0010114: response to red light1.10E-04
28GO:0010037: response to carbon dioxide1.39E-04
29GO:0045727: positive regulation of translation1.39E-04
30GO:2000122: negative regulation of stomatal complex development1.39E-04
31GO:0006546: glycine catabolic process1.39E-04
32GO:0042549: photosystem II stabilization3.01E-04
33GO:0000481: maturation of 5S rRNA5.00E-04
34GO:0006106: fumarate metabolic process5.00E-04
35GO:0034337: RNA folding5.00E-04
36GO:0071588: hydrogen peroxide mediated signaling pathway5.00E-04
37GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.00E-04
38GO:0043489: RNA stabilization5.00E-04
39GO:0071370: cellular response to gibberellin stimulus5.00E-04
40GO:0009637: response to blue light5.10E-04
41GO:0009772: photosynthetic electron transport in photosystem II5.16E-04
42GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.20E-04
43GO:0034220: ion transmembrane transport7.10E-04
44GO:0000413: protein peptidyl-prolyl isomerization7.10E-04
45GO:0032544: plastid translation7.83E-04
46GO:0009657: plastid organization7.83E-04
47GO:0015986: ATP synthesis coupled proton transport8.56E-04
48GO:0009664: plant-type cell wall organization1.06E-03
49GO:0001736: establishment of planar polarity1.08E-03
50GO:0006521: regulation of cellular amino acid metabolic process1.08E-03
51GO:0030388: fructose 1,6-bisphosphate metabolic process1.08E-03
52GO:0006949: syncytium formation1.28E-03
53GO:0009828: plant-type cell wall loosening1.29E-03
54GO:0018119: peptidyl-cysteine S-nitrosylation1.48E-03
55GO:0045493: xylan catabolic process1.76E-03
56GO:2001295: malonyl-CoA biosynthetic process1.76E-03
57GO:0006000: fructose metabolic process1.76E-03
58GO:0090391: granum assembly1.76E-03
59GO:0006518: peptide metabolic process1.76E-03
60GO:0006006: glucose metabolic process1.93E-03
61GO:0009826: unidimensional cell growth2.17E-03
62GO:0010143: cutin biosynthetic process2.18E-03
63GO:0019253: reductive pentose-phosphate cycle2.18E-03
64GO:0009658: chloroplast organization2.32E-03
65GO:0010030: positive regulation of seed germination2.45E-03
66GO:0005985: sucrose metabolic process2.45E-03
67GO:0055070: copper ion homeostasis2.56E-03
68GO:2001141: regulation of RNA biosynthetic process2.56E-03
69GO:1902476: chloride transmembrane transport2.56E-03
70GO:0051513: regulation of monopolar cell growth2.56E-03
71GO:0071484: cellular response to light intensity2.56E-03
72GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.56E-03
73GO:1901332: negative regulation of lateral root development2.56E-03
74GO:0010218: response to far red light2.58E-03
75GO:0006833: water transport2.73E-03
76GO:0009631: cold acclimation2.75E-03
77GO:0006810: transport2.88E-03
78GO:0010109: regulation of photosynthesis3.44E-03
79GO:0019464: glycine decarboxylation via glycine cleavage system3.44E-03
80GO:0009765: photosynthesis, light harvesting3.44E-03
81GO:0015994: chlorophyll metabolic process3.44E-03
82GO:0030104: water homeostasis3.44E-03
83GO:0006461: protein complex assembly4.41E-03
84GO:0034052: positive regulation of plant-type hypersensitive response4.41E-03
85GO:0032543: mitochondrial translation4.41E-03
86GO:0045454: cell redox homeostasis4.65E-03
87GO:0045490: pectin catabolic process4.70E-03
88GO:1902456: regulation of stomatal opening5.46E-03
89GO:0032973: amino acid export5.46E-03
90GO:0042631: cellular response to water deprivation5.60E-03
91GO:0010019: chloroplast-nucleus signaling pathway6.60E-03
92GO:0010555: response to mannitol6.60E-03
93GO:0009612: response to mechanical stimulus6.60E-03
94GO:0017148: negative regulation of translation6.60E-03
95GO:0000302: response to reactive oxygen species7.48E-03
96GO:0043090: amino acid import7.80E-03
97GO:1900056: negative regulation of leaf senescence7.80E-03
98GO:0006821: chloride transport7.80E-03
99GO:0009769: photosynthesis, light harvesting in photosystem II7.80E-03
100GO:0030091: protein repair9.09E-03
101GO:0009819: drought recovery9.09E-03
102GO:0009642: response to light intensity9.09E-03
103GO:0043068: positive regulation of programmed cell death9.09E-03
104GO:0046620: regulation of organ growth9.09E-03
105GO:0032508: DNA duplex unwinding9.09E-03
106GO:0009740: gibberellic acid mediated signaling pathway9.10E-03
107GO:0006002: fructose 6-phosphate metabolic process1.04E-02
108GO:0071482: cellular response to light stimulus1.04E-02
109GO:0010027: thylakoid membrane organization1.09E-02
110GO:0006754: ATP biosynthetic process1.19E-02
111GO:0009051: pentose-phosphate shunt, oxidative branch1.19E-02
112GO:0090305: nucleic acid phosphodiester bond hydrolysis1.19E-02
113GO:0080144: amino acid homeostasis1.19E-02
114GO:0006783: heme biosynthetic process1.19E-02
115GO:0042128: nitrate assimilation1.21E-02
116GO:0010411: xyloglucan metabolic process1.28E-02
117GO:0009638: phototropism1.34E-02
118GO:0009817: defense response to fungus, incompatible interaction1.42E-02
119GO:0048829: root cap development1.49E-02
120GO:0009299: mRNA transcription1.49E-02
121GO:0006782: protoporphyrinogen IX biosynthetic process1.49E-02
122GO:0010311: lateral root formation1.49E-02
123GO:0009750: response to fructose1.65E-02
124GO:0048765: root hair cell differentiation1.65E-02
125GO:0009684: indoleacetic acid biosynthetic process1.65E-02
126GO:0010015: root morphogenesis1.65E-02
127GO:0009698: phenylpropanoid metabolic process1.65E-02
128GO:0019684: photosynthesis, light reaction1.65E-02
129GO:0010119: regulation of stomatal movement1.65E-02
130GO:0009089: lysine biosynthetic process via diaminopimelate1.65E-02
131GO:0006352: DNA-templated transcription, initiation1.65E-02
132GO:0000272: polysaccharide catabolic process1.65E-02
133GO:0006790: sulfur compound metabolic process1.82E-02
134GO:0015706: nitrate transport1.82E-02
135GO:0016024: CDP-diacylglycerol biosynthetic process1.82E-02
136GO:0034599: cellular response to oxidative stress1.89E-02
137GO:0007623: circadian rhythm1.97E-02
138GO:0006108: malate metabolic process1.99E-02
139GO:0009725: response to hormone1.99E-02
140GO:0006094: gluconeogenesis1.99E-02
141GO:0009767: photosynthetic electron transport chain1.99E-02
142GO:0005986: sucrose biosynthetic process1.99E-02
143GO:0030001: metal ion transport2.06E-02
144GO:0009926: auxin polar transport2.33E-02
145GO:0046854: phosphatidylinositol phosphorylation2.36E-02
146GO:0010167: response to nitrate2.36E-02
147GO:0046688: response to copper ion2.36E-02
148GO:0009644: response to high light intensity2.52E-02
149GO:0005992: trehalose biosynthetic process2.74E-02
150GO:0019344: cysteine biosynthetic process2.74E-02
151GO:0000027: ribosomal large subunit assembly2.74E-02
152GO:0009733: response to auxin2.87E-02
153GO:0007017: microtubule-based process2.94E-02
154GO:0055114: oxidation-reduction process3.00E-02
155GO:0006364: rRNA processing3.14E-02
156GO:0048511: rhythmic process3.15E-02
157GO:0061077: chaperone-mediated protein folding3.15E-02
158GO:0009269: response to desiccation3.15E-02
159GO:0003333: amino acid transmembrane transport3.15E-02
160GO:0019748: secondary metabolic process3.35E-02
161GO:0009814: defense response, incompatible interaction3.35E-02
162GO:0035428: hexose transmembrane transport3.35E-02
163GO:0006012: galactose metabolic process3.57E-02
164GO:0009411: response to UV3.57E-02
165GO:0006284: base-excision repair3.79E-02
166GO:0006508: proteolysis4.00E-02
167GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.01E-02
168GO:0080022: primary root development4.24E-02
169GO:0042545: cell wall modification4.33E-02
170GO:0080167: response to karrikin4.44E-02
171GO:0009624: response to nematode4.46E-02
172GO:0046323: glucose import4.47E-02
173GO:0009958: positive gravitropism4.47E-02
174GO:0006396: RNA processing4.59E-02
175GO:0042752: regulation of circadian rhythm4.71E-02
176GO:0009749: response to glucose4.94E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
5GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0043864: indoleacetamide hydrolase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
10GO:0019843: rRNA binding5.29E-13
11GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.82E-09
12GO:0003735: structural constituent of ribosome4.54E-08
13GO:0031409: pigment binding4.68E-07
14GO:0005528: FK506 binding6.34E-07
15GO:0016168: chlorophyll binding1.21E-06
16GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.10E-05
17GO:0051920: peroxiredoxin activity1.20E-05
18GO:0016209: antioxidant activity2.80E-05
19GO:0016851: magnesium chelatase activity8.00E-05
20GO:0004089: carbonate dehydratase activity1.68E-04
21GO:0008266: poly(U) RNA binding2.01E-04
22GO:0004130: cytochrome-c peroxidase activity3.01E-04
23GO:0004333: fumarate hydratase activity5.00E-04
24GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity5.00E-04
25GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity5.00E-04
26GO:0009671: nitrate:proton symporter activity5.00E-04
27GO:0004853: uroporphyrinogen decarboxylase activity5.00E-04
28GO:0047746: chlorophyllase activity1.08E-03
29GO:0016868: intramolecular transferase activity, phosphotransferases1.08E-03
30GO:0010297: heteropolysaccharide binding1.08E-03
31GO:0043425: bHLH transcription factor binding1.08E-03
32GO:0004047: aminomethyltransferase activity1.08E-03
33GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.08E-03
34GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.08E-03
35GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.08E-03
36GO:0008967: phosphoglycolate phosphatase activity1.08E-03
37GO:0015250: water channel activity1.62E-03
38GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.76E-03
39GO:0004324: ferredoxin-NADP+ reductase activity1.76E-03
40GO:0010277: chlorophyllide a oxygenase [overall] activity1.76E-03
41GO:0050734: hydroxycinnamoyltransferase activity1.76E-03
42GO:0004075: biotin carboxylase activity1.76E-03
43GO:0005509: calcium ion binding2.54E-03
44GO:0004375: glycine dehydrogenase (decarboxylating) activity2.56E-03
45GO:0046556: alpha-L-arabinofuranosidase activity3.44E-03
46GO:0004659: prenyltransferase activity3.44E-03
47GO:0001053: plastid sigma factor activity3.44E-03
48GO:0010011: auxin binding3.44E-03
49GO:0004345: glucose-6-phosphate dehydrogenase activity3.44E-03
50GO:0016987: sigma factor activity3.44E-03
51GO:0010328: auxin influx transmembrane transporter activity3.44E-03
52GO:1990137: plant seed peroxidase activity3.44E-03
53GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.44E-03
54GO:0009044: xylan 1,4-beta-xylosidase activity3.44E-03
55GO:0005253: anion channel activity3.44E-03
56GO:0004185: serine-type carboxypeptidase activity4.27E-03
57GO:0030570: pectate lyase activity4.39E-03
58GO:0003989: acetyl-CoA carboxylase activity4.41E-03
59GO:0008725: DNA-3-methyladenine glycosylase activity4.41E-03
60GO:0003959: NADPH dehydrogenase activity4.41E-03
61GO:0004040: amidase activity4.41E-03
62GO:0051537: 2 iron, 2 sulfur cluster binding4.72E-03
63GO:0003727: single-stranded RNA binding4.78E-03
64GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.46E-03
65GO:0005247: voltage-gated chloride channel activity5.46E-03
66GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.46E-03
67GO:0016688: L-ascorbate peroxidase activity5.46E-03
68GO:0046933: proton-transporting ATP synthase activity, rotational mechanism6.04E-03
69GO:0050662: coenzyme binding6.50E-03
70GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.60E-03
71GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.60E-03
72GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.60E-03
73GO:0004017: adenylate kinase activity6.60E-03
74GO:0004602: glutathione peroxidase activity6.60E-03
75GO:0016791: phosphatase activity9.08E-03
76GO:0004564: beta-fructofuranosidase activity9.09E-03
77GO:0004034: aldose 1-epimerase activity9.09E-03
78GO:0004033: aldo-keto reductase (NADP) activity9.09E-03
79GO:0004601: peroxidase activity9.14E-03
80GO:0015078: hydrogen ion transmembrane transporter activity1.04E-02
81GO:0015112: nitrate transmembrane transporter activity1.34E-02
82GO:0004575: sucrose alpha-glucosidase activity1.34E-02
83GO:0004805: trehalose-phosphatase activity1.49E-02
84GO:0030234: enzyme regulator activity1.49E-02
85GO:0004222: metalloendopeptidase activity1.57E-02
86GO:0008378: galactosyltransferase activity1.82E-02
87GO:0003993: acid phosphatase activity1.89E-02
88GO:0031072: heat shock protein binding1.99E-02
89GO:0050661: NADP binding2.06E-02
90GO:0004707: MAP kinase activity3.15E-02
91GO:0004176: ATP-dependent peptidase activity3.15E-02
92GO:0046872: metal ion binding3.45E-02
93GO:0015171: amino acid transmembrane transporter activity3.48E-02
94GO:0045330: aspartyl esterase activity3.48E-02
95GO:0003756: protein disulfide isomerase activity3.79E-02
96GO:0004650: polygalacturonase activity4.08E-02
97GO:0030599: pectinesterase activity4.20E-02
98GO:0016853: isomerase activity4.71E-02
99GO:0005355: glucose transmembrane transporter activity4.71E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0009507: chloroplast1.47E-68
6GO:0009535: chloroplast thylakoid membrane2.42E-68
7GO:0009534: chloroplast thylakoid7.28E-66
8GO:0009941: chloroplast envelope7.07E-50
9GO:0009579: thylakoid1.13E-49
10GO:0009570: chloroplast stroma5.28E-41
11GO:0009543: chloroplast thylakoid lumen2.87E-37
12GO:0031977: thylakoid lumen1.89E-24
13GO:0010287: plastoglobule1.44E-14
14GO:0030095: chloroplast photosystem II6.79E-13
15GO:0009654: photosystem II oxygen evolving complex3.75E-10
16GO:0016020: membrane1.93E-09
17GO:0019898: extrinsic component of membrane7.27E-09
18GO:0005840: ribosome2.12E-08
19GO:0048046: apoplast1.43E-07
20GO:0009522: photosystem I1.93E-07
21GO:0009538: photosystem I reaction center4.75E-07
22GO:0010319: stromule6.98E-07
23GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.26E-06
24GO:0009523: photosystem II6.34E-06
25GO:0030093: chloroplast photosystem I1.10E-05
26GO:0009533: chloroplast stromal thylakoid1.90E-05
27GO:0010007: magnesium chelatase complex3.74E-05
28GO:0009505: plant-type cell wall2.26E-04
29GO:0030076: light-harvesting complex2.36E-04
30GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.01E-04
31GO:0009706: chloroplast inner membrane4.04E-04
32GO:0015935: small ribosomal subunit4.12E-04
33GO:0009344: nitrite reductase complex [NAD(P)H]5.00E-04
34GO:0045239: tricarboxylic acid cycle enzyme complex5.00E-04
35GO:0009782: photosystem I antenna complex5.00E-04
36GO:0043674: columella5.00E-04
37GO:0009783: photosystem II antenna complex5.00E-04
38GO:0009515: granal stacked thylakoid5.00E-04
39GO:0005618: cell wall5.55E-04
40GO:0000427: plastid-encoded plastid RNA polymerase complex1.08E-03
41GO:0009508: plastid chromosome1.93E-03
42GO:0009531: secondary cell wall2.56E-03
43GO:0005775: vacuolar lumen2.56E-03
44GO:0005960: glycine cleavage complex2.56E-03
45GO:0042651: thylakoid membrane3.34E-03
46GO:0031969: chloroplast membrane3.39E-03
47GO:0009544: chloroplast ATP synthase complex3.44E-03
48GO:0009517: PSII associated light-harvesting complex II3.44E-03
49GO:0055035: plastid thylakoid membrane4.41E-03
50GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)5.46E-03
51GO:0034707: chloride channel complex5.46E-03
52GO:0009986: cell surface7.80E-03
53GO:0042807: central vacuole7.80E-03
54GO:0009295: nucleoid9.65E-03
55GO:0005811: lipid particle1.04E-02
56GO:0008180: COP9 signalosome1.19E-02
57GO:0042644: chloroplast nucleoid1.19E-02
58GO:0045298: tubulin complex1.19E-02
59GO:0000311: plastid large ribosomal subunit1.82E-02
60GO:0032040: small-subunit processome1.82E-02
61GO:0009705: plant-type vacuole membrane1.97E-02
62GO:0022626: cytosolic ribosome4.91E-02
<
Gene type



Gene DE type