co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G01015

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905499: trichome papilla formation	0.00E+00
2	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
3	GO:1901698: response to nitrogen compound	0.00E+00
4	GO:0006223: uracil salvage	0.00E+00
5	GO:0006642: triglyceride mobilization	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0060416: response to growth hormone	0.00E+00
8	GO:0097164: ammonium ion metabolic process	0.00E+00
9	GO:0010027: thylakoid membrane organization	1.30E-06
10	GO:0010583: response to cyclopentenone	1.73E-05
11	GO:0010444: guard mother cell differentiation	1.74E-04
12	GO:0042335: cuticle development	1.75E-04
13	GO:0043007: maintenance of rDNA	2.43E-04
14	GO:1903409: reactive oxygen species biosynthetic process	2.43E-04
15	GO:0006438: valyl-tRNA aminoacylation	2.43E-04
16	GO:0046520: sphingoid biosynthetic process	2.43E-04
17	GO:0010442: guard cell morphogenesis	2.43E-04
18	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.43E-04
19	GO:0032544: plastid translation	2.74E-04
20	GO:0080148: negative regulation of response to water deprivation	5.39E-04
21	GO:0006529: asparagine biosynthetic process	5.39E-04
22	GO:2000123: positive regulation of stomatal complex development	5.39E-04
23	GO:0052541: plant-type cell wall cellulose metabolic process	5.39E-04
24	GO:0006695: cholesterol biosynthetic process	5.39E-04
25	GO:0010115: regulation of abscisic acid biosynthetic process	5.39E-04
26	GO:0070981: L-asparagine biosynthetic process	5.39E-04
27	GO:0060919: auxin influx	5.39E-04
28	GO:0018026: peptidyl-lysine monomethylation	5.39E-04
29	GO:0006633: fatty acid biosynthetic process	8.01E-04
30	GO:0032504: multicellular organism reproduction	8.75E-04
31	GO:0006954: inflammatory response	8.75E-04
32	GO:0019563: glycerol catabolic process	8.75E-04
33	GO:0006518: peptide metabolic process	8.75E-04
34	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.75E-04
35	GO:0071705: nitrogen compound transport	8.75E-04
36	GO:0051604: protein maturation	8.75E-04
37	GO:0006631: fatty acid metabolic process	9.99E-04
38	GO:0006166: purine ribonucleoside salvage	1.25E-03
39	GO:0006424: glutamyl-tRNA aminoacylation	1.25E-03
40	GO:0046739: transport of virus in multicellular host	1.25E-03
41	GO:0006168: adenine salvage	1.25E-03
42	GO:0006808: regulation of nitrogen utilization	1.67E-03
43	GO:0015976: carbon utilization	1.67E-03
44	GO:0071249: cellular response to nitrate	1.67E-03
45	GO:2000038: regulation of stomatal complex development	1.67E-03
46	GO:0006021: inositol biosynthetic process	1.67E-03
47	GO:0044206: UMP salvage	1.67E-03
48	GO:0006749: glutathione metabolic process	1.67E-03
49	GO:0009658: chloroplast organization	1.78E-03
50	GO:0042254: ribosome biogenesis	1.83E-03
51	GO:0080022: primary root development	1.94E-03
52	GO:0044209: AMP salvage	2.13E-03
53	GO:0006665: sphingolipid metabolic process	2.13E-03
54	GO:0010375: stomatal complex patterning	2.13E-03
55	GO:0009247: glycolipid biosynthetic process	2.13E-03
56	GO:0032543: mitochondrial translation	2.13E-03
57	GO:0043097: pyrimidine nucleoside salvage	2.13E-03
58	GO:0006564: L-serine biosynthetic process	2.13E-03
59	GO:0045038: protein import into chloroplast thylakoid membrane	2.13E-03
60	GO:0006561: proline biosynthetic process	2.62E-03
61	GO:0010405: arabinogalactan protein metabolic process	2.62E-03
62	GO:0016554: cytidine to uridine editing	2.62E-03
63	GO:0006655: phosphatidylglycerol biosynthetic process	2.62E-03
64	GO:0042793: transcription from plastid promoter	2.62E-03
65	GO:0010190: cytochrome b6f complex assembly	2.62E-03
66	GO:0006206: pyrimidine nucleobase metabolic process	2.62E-03
67	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.62E-03
68	GO:0035435: phosphate ion transmembrane transport	2.62E-03
69	GO:0046855: inositol phosphate dephosphorylation	2.62E-03
70	GO:0009972: cytidine deamination	2.62E-03
71	GO:0032502: developmental process	2.75E-03
72	GO:0009554: megasporogenesis	3.15E-03
73	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.15E-03
74	GO:0009955: adaxial/abaxial pattern specification	3.15E-03
75	GO:0042372: phylloquinone biosynthetic process	3.15E-03
76	GO:1901259: chloroplast rRNA processing	3.15E-03
77	GO:0006694: steroid biosynthetic process	3.15E-03
78	GO:0048280: vesicle fusion with Golgi apparatus	3.15E-03
79	GO:0007267: cell-cell signaling	3.31E-03
80	GO:0009610: response to symbiotic fungus	3.72E-03
81	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.72E-03
82	GO:0009690: cytokinin metabolic process	4.31E-03
83	GO:0006605: protein targeting	4.31E-03
84	GO:0019375: galactolipid biosynthetic process	4.31E-03
85	GO:0010078: maintenance of root meristem identity	4.31E-03
86	GO:0006875: cellular metal ion homeostasis	4.31E-03
87	GO:0009704: de-etiolation	4.31E-03
88	GO:0043562: cellular response to nitrogen levels	4.93E-03
89	GO:0009808: lignin metabolic process	4.93E-03
90	GO:0009932: cell tip growth	4.93E-03
91	GO:0010497: plasmodesmata-mediated intercellular transport	4.93E-03
92	GO:0048527: lateral root development	5.59E-03
93	GO:0045337: farnesyl diphosphate biosynthetic process	5.59E-03
94	GO:0033384: geranyl diphosphate biosynthetic process	5.59E-03
95	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	6.27E-03
96	GO:0042761: very long-chain fatty acid biosynthetic process	6.27E-03
97	GO:1900865: chloroplast RNA modification	6.27E-03
98	GO:0055114: oxidation-reduction process	6.71E-03
99	GO:0009688: abscisic acid biosynthetic process	6.99E-03
100	GO:0043069: negative regulation of programmed cell death	6.99E-03
101	GO:0048829: root cap development	6.99E-03
102	GO:0006896: Golgi to vacuole transport	6.99E-03
103	GO:0006535: cysteine biosynthetic process from serine	6.99E-03
104	GO:0009684: indoleacetic acid biosynthetic process	7.73E-03
105	GO:0000038: very long-chain fatty acid metabolic process	7.73E-03
106	GO:0009073: aromatic amino acid family biosynthetic process	7.73E-03
107	GO:0006415: translational termination	7.73E-03
108	GO:0009750: response to fructose	7.73E-03
109	GO:0018119: peptidyl-cysteine S-nitrosylation	7.73E-03
110	GO:0006790: sulfur compound metabolic process	8.49E-03
111	GO:0015706: nitrate transport	8.49E-03
112	GO:0016024: CDP-diacylglycerol biosynthetic process	8.49E-03
113	GO:0045037: protein import into chloroplast stroma	8.49E-03
114	GO:0008643: carbohydrate transport	8.55E-03
115	GO:0030036: actin cytoskeleton organization	9.29E-03
116	GO:0050826: response to freezing	9.29E-03
117	GO:0006094: gluconeogenesis	9.29E-03
118	GO:0010588: cotyledon vascular tissue pattern formation	9.29E-03
119	GO:0042538: hyperosmotic salinity response	9.93E-03
120	GO:0007049: cell cycle	1.01E-02
121	GO:0048467: gynoecium development	1.01E-02
122	GO:0006541: glutamine metabolic process	1.01E-02
123	GO:0019253: reductive pentose-phosphate cycle	1.01E-02
124	GO:0046854: phosphatidylinositol phosphorylation	1.10E-02
125	GO:0010167: response to nitrate	1.10E-02
126	GO:0019853: L-ascorbic acid biosynthetic process	1.10E-02
127	GO:0006071: glycerol metabolic process	1.18E-02
128	GO:0006833: water transport	1.18E-02
129	GO:0010025: wax biosynthetic process	1.18E-02
130	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.20E-02
131	GO:0006096: glycolytic process	1.26E-02
132	GO:0005992: trehalose biosynthetic process	1.27E-02
133	GO:0019344: cysteine biosynthetic process	1.27E-02
134	GO:0009116: nucleoside metabolic process	1.27E-02
135	GO:0006418: tRNA aminoacylation for protein translation	1.37E-02
136	GO:0010026: trichome differentiation	1.37E-02
137	GO:0007017: microtubule-based process	1.37E-02
138	GO:0003333: amino acid transmembrane transport	1.46E-02
139	GO:0016226: iron-sulfur cluster assembly	1.56E-02
140	GO:0051726: regulation of cell cycle	1.62E-02
141	GO:0006869: lipid transport	1.63E-02
142	GO:0010091: trichome branching	1.76E-02
143	GO:0019722: calcium-mediated signaling	1.76E-02
144	GO:0042127: regulation of cell proliferation	1.76E-02
145	GO:0009306: protein secretion	1.76E-02
146	GO:0042147: retrograde transport, endosome to Golgi	1.86E-02
147	GO:0000413: protein peptidyl-prolyl isomerization	1.97E-02
148	GO:0010087: phloem or xylem histogenesis	1.97E-02
149	GO:0000271: polysaccharide biosynthetic process	1.97E-02
150	GO:0034220: ion transmembrane transport	1.97E-02
151	GO:0010182: sugar mediated signaling pathway	2.07E-02
152	GO:0009958: positive gravitropism	2.07E-02
153	GO:0045489: pectin biosynthetic process	2.07E-02
154	GO:0009646: response to absence of light	2.18E-02
155	GO:0008654: phospholipid biosynthetic process	2.29E-02
156	GO:0009851: auxin biosynthetic process	2.29E-02
157	GO:0006623: protein targeting to vacuole	2.29E-02
158	GO:0048825: cotyledon development	2.29E-02
159	GO:0016132: brassinosteroid biosynthetic process	2.41E-02
160	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.41E-02
161	GO:0006891: intra-Golgi vesicle-mediated transport	2.41E-02
162	GO:0040008: regulation of growth	2.52E-02
163	GO:0009567: double fertilization forming a zygote and endosperm	2.76E-02
164	GO:0006412: translation	2.82E-02
165	GO:0000910: cytokinesis	3.01E-02
166	GO:0009735: response to cytokinin	3.46E-02
167	GO:0015995: chlorophyll biosynthetic process	3.52E-02
168	GO:0006888: ER to Golgi vesicle-mediated transport	3.52E-02
169	GO:0016311: dephosphorylation	3.65E-02
170	GO:0000160: phosphorelay signal transduction system	3.92E-02
171	GO:0009813: flavonoid biosynthetic process	3.92E-02
172	GO:0010311: lateral root formation	3.92E-02
173	GO:0009793: embryo development ending in seed dormancy	3.95E-02
174	GO:0009834: plant-type secondary cell wall biogenesis	4.05E-02
175	GO:0009407: toxin catabolic process	4.05E-02
176	GO:0007568: aging	4.19E-02
177	GO:0051301: cell division	4.30E-02
178	GO:0006865: amino acid transport	4.33E-02
179	GO:0009860: pollen tube growth	4.38E-02
180	GO:0016051: carbohydrate biosynthetic process	4.48E-02
181	GO:0030001: metal ion transport	4.91E-02
182	GO:0006839: mitochondrial transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
5	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
6	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
7	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
8	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
9	GO:0051920: peroxiredoxin activity	1.32E-04
10	GO:0016209: antioxidant activity	2.22E-04
11	GO:0004328: formamidase activity	2.43E-04
12	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.43E-04
13	GO:0000170: sphingosine hydroxylase activity	2.43E-04
14	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.43E-04
15	GO:0004560: alpha-L-fucosidase activity	2.43E-04
16	GO:0004807: triose-phosphate isomerase activity	2.43E-04
17	GO:0001530: lipopolysaccharide binding	2.43E-04
18	GO:0080132: fatty acid alpha-hydroxylase activity	2.43E-04
19	GO:0004071: aspartate-ammonia ligase activity	2.43E-04
20	GO:0009374: biotin binding	2.43E-04
21	GO:0015088: copper uptake transmembrane transporter activity	2.43E-04
22	GO:0004832: valine-tRNA ligase activity	2.43E-04
23	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.39E-04
24	GO:0004617: phosphoglycerate dehydrogenase activity	5.39E-04
25	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.39E-04
26	GO:0052832: inositol monophosphate 3-phosphatase activity	5.39E-04
27	GO:0042284: sphingolipid delta-4 desaturase activity	5.39E-04
28	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.39E-04
29	GO:0008934: inositol monophosphate 1-phosphatase activity	5.39E-04
30	GO:0052833: inositol monophosphate 4-phosphatase activity	5.39E-04
31	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	5.39E-04
32	GO:0019843: rRNA binding	5.66E-04
33	GO:0052689: carboxylic ester hydrolase activity	6.13E-04
34	GO:0004022: alcohol dehydrogenase (NAD) activity	6.91E-04
35	GO:0017150: tRNA dihydrouridine synthase activity	8.75E-04
36	GO:0005504: fatty acid binding	8.75E-04
37	GO:0004148: dihydrolipoyl dehydrogenase activity	8.75E-04
38	GO:0008097: 5S rRNA binding	1.25E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	1.25E-03
40	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.25E-03
41	GO:0035250: UDP-galactosyltransferase activity	1.25E-03
42	GO:0003999: adenine phosphoribosyltransferase activity	1.25E-03
43	GO:0016149: translation release factor activity, codon specific	1.25E-03
44	GO:0016851: magnesium chelatase activity	1.25E-03
45	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.25E-03
46	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.25E-03
47	GO:0016279: protein-lysine N-methyltransferase activity	1.67E-03
48	GO:0004845: uracil phosphoribosyltransferase activity	1.67E-03
49	GO:0010328: auxin influx transmembrane transporter activity	1.67E-03
50	GO:0045430: chalcone isomerase activity	1.67E-03
51	GO:0008289: lipid binding	1.81E-03
52	GO:0003989: acetyl-CoA carboxylase activity	2.13E-03
53	GO:0009922: fatty acid elongase activity	2.13E-03
54	GO:0016846: carbon-sulfur lyase activity	2.13E-03
55	GO:0004040: amidase activity	2.13E-03
56	GO:0019901: protein kinase binding	2.40E-03
57	GO:0004605: phosphatidate cytidylyltransferase activity	2.62E-03
58	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.62E-03
59	GO:0016208: AMP binding	2.62E-03
60	GO:0004124: cysteine synthase activity	3.15E-03
61	GO:0004126: cytidine deaminase activity	3.15E-03
62	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.15E-03
63	GO:0051753: mannan synthase activity	3.15E-03
64	GO:0004849: uridine kinase activity	3.15E-03
65	GO:0016758: transferase activity, transferring hexosyl groups	3.23E-03
66	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.31E-03
67	GO:0005200: structural constituent of cytoskeleton	3.31E-03
68	GO:0016597: amino acid binding	3.50E-03
69	GO:0008312: 7S RNA binding	4.31E-03
70	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.33E-03
71	GO:0003747: translation release factor activity	5.59E-03
72	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.59E-03
73	GO:0004337: geranyltranstransferase activity	5.59E-03
74	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.59E-03
75	GO:0005381: iron ion transmembrane transporter activity	6.27E-03
76	GO:0004805: trehalose-phosphatase activity	6.99E-03
77	GO:0004161: dimethylallyltranstransferase activity	7.73E-03
78	GO:0016788: hydrolase activity, acting on ester bonds	8.98E-03
79	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.23E-03
80	GO:0004089: carbonate dehydratase activity	9.29E-03
81	GO:0015114: phosphate ion transmembrane transporter activity	9.29E-03
82	GO:0003735: structural constituent of ribosome	1.09E-02
83	GO:0051119: sugar transmembrane transporter activity	1.10E-02
84	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.18E-02
85	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.18E-02
86	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.18E-02
87	GO:0051536: iron-sulfur cluster binding	1.27E-02
88	GO:0016491: oxidoreductase activity	1.54E-02
89	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.56E-02
90	GO:0008514: organic anion transmembrane transporter activity	1.76E-02
91	GO:0004812: aminoacyl-tRNA ligase activity	1.86E-02
92	GO:0003713: transcription coactivator activity	2.07E-02
93	GO:0008080: N-acetyltransferase activity	2.07E-02
94	GO:0010181: FMN binding	2.18E-02
95	GO:0000156: phosphorelay response regulator activity	2.64E-02
96	GO:0008194: UDP-glycosyltransferase activity	2.95E-02
97	GO:0015250: water channel activity	3.13E-02
98	GO:0003824: catalytic activity	3.50E-02
99	GO:0030247: polysaccharide binding	3.52E-02
100	GO:0005215: transporter activity	3.54E-02
101	GO:0008236: serine-type peptidase activity	3.65E-02
102	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.78E-02
103	GO:0015238: drug transmembrane transporter activity	3.92E-02
104	GO:0004222: metalloendopeptidase activity	4.05E-02
105	GO:0004601: peroxidase activity	4.07E-02
106	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.19E-02
107	GO:0003993: acid phosphatase activity	4.62E-02
108	GO:0050660: flavin adenine dinucleotide binding	4.70E-02
109	GO:0000149: SNARE binding	4.76E-02
110	GO:0016740: transferase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009570: chloroplast stroma	7.87E-14
4	GO:0009941: chloroplast envelope	1.61E-11
5	GO:0009507: chloroplast	8.64E-11
6	GO:0046658: anchored component of plasma membrane	1.01E-08
7	GO:0031225: anchored component of membrane	2.44E-08
8	GO:0009535: chloroplast thylakoid membrane	3.41E-05
9	GO:0009923: fatty acid elongase complex	2.43E-04
10	GO:0009505: plant-type cell wall	3.89E-04
11	GO:0080085: signal recognition particle, chloroplast targeting	5.39E-04
12	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.39E-04
13	GO:0010007: magnesium chelatase complex	8.75E-04
14	GO:0009509: chromoplast	8.75E-04
15	GO:0009317: acetyl-CoA carboxylase complex	8.75E-04
16	GO:0009536: plastid	1.27E-03
17	GO:0009526: plastid envelope	1.67E-03
18	GO:0031897: Tic complex	1.67E-03
19	GO:0048046: apoplast	1.81E-03
20	GO:0009506: plasmodesma	1.88E-03
21	GO:0055035: plastid thylakoid membrane	2.13E-03
22	GO:0005840: ribosome	3.11E-03
23	GO:0005886: plasma membrane	3.22E-03
24	GO:0009543: chloroplast thylakoid lumen	3.34E-03
25	GO:0009533: chloroplast stromal thylakoid	3.72E-03
26	GO:0009579: thylakoid	3.81E-03
27	GO:0009534: chloroplast thylakoid	3.88E-03
28	GO:0012507: ER to Golgi transport vesicle membrane	4.31E-03
29	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.93E-03
30	GO:0005763: mitochondrial small ribosomal subunit	5.59E-03
31	GO:0045298: tubulin complex	5.59E-03
32	GO:0016020: membrane	6.69E-03
33	GO:0005576: extracellular region	8.15E-03
34	GO:0000311: plastid large ribosomal subunit	8.49E-03
35	GO:0009508: plastid chromosome	9.29E-03
36	GO:0009706: chloroplast inner membrane	1.52E-02
37	GO:0016021: integral component of membrane	1.77E-02
38	GO:0005789: endoplasmic reticulum membrane	1.98E-02
39	GO:0005794: Golgi apparatus	2.23E-02
40	GO:0009504: cell plate	2.29E-02
41	GO:0005778: peroxisomal membrane	2.88E-02
42	GO:0009295: nucleoid	2.88E-02
43	GO:0005615: extracellular space	2.95E-02
44	GO:0000139: Golgi membrane	4.73E-02