co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
2	GO:0006642: triglyceride mobilization	0.00E+00
3	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
4	GO:0060416: response to growth hormone	0.00E+00
5	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
6	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
7	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
8	GO:0002184: cytoplasmic translational termination	0.00E+00
9	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
10	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.51E-06
11	GO:0032544: plastid translation	2.45E-05
12	GO:0009658: chloroplast organization	5.15E-05
13	GO:0016556: mRNA modification	5.66E-05
14	GO:0032543: mitochondrial translation	1.54E-04
15	GO:0016123: xanthophyll biosynthetic process	1.54E-04
16	GO:0015995: chlorophyll biosynthetic process	1.79E-04
17	GO:0006655: phosphatidylglycerol biosynthetic process	2.21E-04
18	GO:0016998: cell wall macromolecule catabolic process	2.77E-04
19	GO:0043266: regulation of potassium ion transport	4.10E-04
20	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	4.10E-04
21	GO:2000021: regulation of ion homeostasis	4.10E-04
22	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	4.10E-04
23	GO:1900865: chloroplast RNA modification	8.29E-04
24	GO:0010115: regulation of abscisic acid biosynthetic process	8.88E-04
25	GO:0045717: negative regulation of fatty acid biosynthetic process	8.88E-04
26	GO:0018026: peptidyl-lysine monomethylation	8.88E-04
27	GO:0080148: negative regulation of response to water deprivation	8.88E-04
28	GO:0010289: homogalacturonan biosynthetic process	8.88E-04
29	GO:0010270: photosystem II oxygen evolving complex assembly	8.88E-04
30	GO:0010198: synergid death	8.88E-04
31	GO:0006415: translational termination	1.11E-03
32	GO:0016024: CDP-diacylglycerol biosynthetic process	1.27E-03
33	GO:0010411: xyloglucan metabolic process	1.37E-03
34	GO:0042254: ribosome biogenesis	1.40E-03
35	GO:0019563: glycerol catabolic process	1.44E-03
36	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.44E-03
37	GO:2001295: malonyl-CoA biosynthetic process	1.44E-03
38	GO:0032504: multicellular organism reproduction	1.44E-03
39	GO:0090506: axillary shoot meristem initiation	1.44E-03
40	GO:0010020: chloroplast fission	1.62E-03
41	GO:0009407: toxin catabolic process	1.76E-03
42	GO:0006424: glutamyl-tRNA aminoacylation	2.08E-03
43	GO:0046739: transport of virus in multicellular host	2.08E-03
44	GO:0043572: plastid fission	2.08E-03
45	GO:0055070: copper ion homeostasis	2.08E-03
46	GO:0010371: regulation of gibberellin biosynthetic process	2.08E-03
47	GO:0009152: purine ribonucleotide biosynthetic process	2.08E-03
48	GO:0046653: tetrahydrofolate metabolic process	2.08E-03
49	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.11E-03
50	GO:0006633: fatty acid biosynthetic process	2.56E-03
51	GO:0031122: cytoplasmic microtubule organization	2.80E-03
52	GO:0006749: glutathione metabolic process	2.80E-03
53	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	2.80E-03
54	GO:0006808: regulation of nitrogen utilization	2.80E-03
55	GO:0015976: carbon utilization	2.80E-03
56	GO:0009765: photosynthesis, light harvesting	2.80E-03
57	GO:0042546: cell wall biogenesis	3.06E-03
58	GO:0009636: response to toxic substance	3.38E-03
59	GO:0000304: response to singlet oxygen	3.59E-03
60	GO:0016120: carotene biosynthetic process	3.59E-03
61	GO:0045487: gibberellin catabolic process	3.59E-03
62	GO:0045038: protein import into chloroplast thylakoid membrane	3.59E-03
63	GO:0035434: copper ion transmembrane transport	3.59E-03
64	GO:0016117: carotenoid biosynthetic process	3.84E-03
65	GO:0000413: protein peptidyl-prolyl isomerization	4.15E-03
66	GO:0016554: cytidine to uridine editing	4.44E-03
67	GO:0006796: phosphate-containing compound metabolic process	4.44E-03
68	GO:0006828: manganese ion transport	4.44E-03
69	GO:0010190: cytochrome b6f complex assembly	4.44E-03
70	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.44E-03
71	GO:0006014: D-ribose metabolic process	4.44E-03
72	GO:0006561: proline biosynthetic process	4.44E-03
73	GO:0010405: arabinogalactan protein metabolic process	4.44E-03
74	GO:0006751: glutathione catabolic process	4.44E-03
75	GO:0010067: procambium histogenesis	5.35E-03
76	GO:0042372: phylloquinone biosynthetic process	5.35E-03
77	GO:0042026: protein refolding	5.35E-03
78	GO:0009082: branched-chain amino acid biosynthetic process	5.35E-03
79	GO:0006458: 'de novo' protein folding	5.35E-03
80	GO:0009099: valine biosynthetic process	5.35E-03
81	GO:0071554: cell wall organization or biogenesis	5.53E-03
82	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.32E-03
83	GO:0006955: immune response	6.32E-03
84	GO:0009395: phospholipid catabolic process	6.32E-03
85	GO:0042255: ribosome assembly	7.35E-03
86	GO:0006353: DNA-templated transcription, termination	7.35E-03
87	GO:0009704: de-etiolation	7.35E-03
88	GO:0048564: photosystem I assembly	7.35E-03
89	GO:0010027: thylakoid membrane organization	8.01E-03
90	GO:0010497: plasmodesmata-mediated intercellular transport	8.43E-03
91	GO:0009657: plastid organization	8.43E-03
92	GO:0009097: isoleucine biosynthetic process	8.43E-03
93	GO:0006526: arginine biosynthetic process	8.43E-03
94	GO:0017004: cytochrome complex assembly	8.43E-03
95	GO:0010206: photosystem II repair	9.58E-03
96	GO:0006754: ATP biosynthetic process	9.58E-03
97	GO:0000373: Group II intron splicing	9.58E-03
98	GO:0048589: developmental growth	9.58E-03
99	GO:0015979: photosynthesis	9.79E-03
100	GO:0031425: chloroplast RNA processing	1.08E-02
101	GO:0009793: embryo development ending in seed dormancy	1.08E-02
102	GO:0006779: porphyrin-containing compound biosynthetic process	1.08E-02
103	GO:0009098: leucine biosynthetic process	1.08E-02
104	GO:0006782: protoporphyrinogen IX biosynthetic process	1.20E-02
105	GO:0019538: protein metabolic process	1.20E-02
106	GO:0009688: abscisic acid biosynthetic process	1.20E-02
107	GO:0009773: photosynthetic electron transport in photosystem I	1.33E-02
108	GO:0016051: carbohydrate biosynthetic process	1.33E-02
109	GO:0009750: response to fructose	1.33E-02
110	GO:0018119: peptidyl-cysteine S-nitrosylation	1.33E-02
111	GO:0030148: sphingolipid biosynthetic process	1.33E-02
112	GO:0006816: calcium ion transport	1.33E-02
113	GO:0006412: translation	1.44E-02
114	GO:0030001: metal ion transport	1.52E-02
115	GO:0006839: mitochondrial transport	1.52E-02
116	GO:0010628: positive regulation of gene expression	1.61E-02
117	GO:0006094: gluconeogenesis	1.61E-02
118	GO:0009767: photosynthetic electron transport chain	1.61E-02
119	GO:0010207: photosystem II assembly	1.75E-02
120	GO:0019253: reductive pentose-phosphate cycle	1.75E-02
121	GO:0010223: secondary shoot formation	1.75E-02
122	GO:0048768: root hair cell tip growth	1.75E-02
123	GO:0071732: cellular response to nitric oxide	1.90E-02
124	GO:0007010: cytoskeleton organization	2.21E-02
125	GO:0006418: tRNA aminoacylation for protein translation	2.37E-02
126	GO:0031408: oxylipin biosynthetic process	2.53E-02
127	GO:0061077: chaperone-mediated protein folding	2.53E-02
128	GO:0016226: iron-sulfur cluster assembly	2.70E-02
129	GO:0035428: hexose transmembrane transport	2.70E-02
130	GO:0006096: glycolytic process	2.75E-02
131	GO:0071369: cellular response to ethylene stimulus	2.87E-02
132	GO:0001944: vasculature development	2.87E-02
133	GO:0019722: calcium-mediated signaling	3.05E-02
134	GO:0009306: protein secretion	3.05E-02
135	GO:0010089: xylem development	3.05E-02
136	GO:0042545: cell wall modification	3.21E-02
137	GO:0042335: cuticle development	3.41E-02
138	GO:0080022: primary root development	3.41E-02
139	GO:0008033: tRNA processing	3.41E-02
140	GO:0010087: phloem or xylem histogenesis	3.41E-02
141	GO:0071555: cell wall organization	3.57E-02
142	GO:0006520: cellular amino acid metabolic process	3.60E-02
143	GO:0010182: sugar mediated signaling pathway	3.60E-02
144	GO:0046323: glucose import	3.60E-02
145	GO:0019252: starch biosynthetic process	3.99E-02
146	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.18E-02
147	GO:0006869: lipid transport	4.28E-02
148	GO:0032502: developmental process	4.38E-02
149	GO:0007264: small GTPase mediated signal transduction	4.38E-02
150	GO:0071281: cellular response to iron ion	4.59E-02
151	GO:0016042: lipid catabolic process	4.77E-02
152	GO:0016125: sterol metabolic process	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0004496: mevalonate kinase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0004823: leucine-tRNA ligase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
7	GO:1990534: thermospermine oxidase activity	0.00E+00
8	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
11	GO:0019843: rRNA binding	4.84E-06
12	GO:0016149: translation release factor activity, codon specific	5.66E-05
13	GO:0016851: magnesium chelatase activity	5.66E-05
14	GO:0051920: peroxiredoxin activity	2.97E-04
15	GO:0016788: hydrolase activity, acting on ester bonds	3.17E-04
16	GO:0008568: microtubule-severing ATPase activity	4.10E-04
17	GO:0047560: 3-dehydrosphinganine reductase activity	4.10E-04
18	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	4.10E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.10E-04
20	GO:0004328: formamidase activity	4.10E-04
21	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.10E-04
22	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	4.10E-04
23	GO:0005227: calcium activated cation channel activity	4.10E-04
24	GO:0004807: triose-phosphate isomerase activity	4.10E-04
25	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.10E-04
26	GO:0042834: peptidoglycan binding	4.10E-04
27	GO:0016209: antioxidant activity	4.80E-04
28	GO:0016762: xyloglucan:xyloglucosyl transferase activity	7.01E-04
29	GO:0003747: translation release factor activity	7.02E-04
30	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	8.88E-04
31	GO:0003839: gamma-glutamylcyclotransferase activity	8.88E-04
32	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.88E-04
33	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.37E-03
34	GO:0019829: cation-transporting ATPase activity	1.44E-03
35	GO:0017150: tRNA dihydrouridine synthase activity	1.44E-03
36	GO:0003913: DNA photolyase activity	1.44E-03
37	GO:0002161: aminoacyl-tRNA editing activity	1.44E-03
38	GO:0004148: dihydrolipoyl dehydrogenase activity	1.44E-03
39	GO:0004022: alcohol dehydrogenase (NAD) activity	1.44E-03
40	GO:0004075: biotin carboxylase activity	1.44E-03
41	GO:0030267: glyoxylate reductase (NADP) activity	1.44E-03
42	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.44E-03
43	GO:0008864: formyltetrahydrofolate deformylase activity	1.44E-03
44	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.44E-03
45	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.44E-03
46	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.44E-03
47	GO:0016531: copper chaperone activity	1.44E-03
48	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.08E-03
49	GO:0052656: L-isoleucine transaminase activity	2.08E-03
50	GO:0043023: ribosomal large subunit binding	2.08E-03
51	GO:0052654: L-leucine transaminase activity	2.08E-03
52	GO:0008097: 5S rRNA binding	2.08E-03
53	GO:0052655: L-valine transaminase activity	2.08E-03
54	GO:0001872: (1->3)-beta-D-glucan binding	2.08E-03
55	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.08E-03
56	GO:0004364: glutathione transferase activity	2.77E-03
57	GO:0052793: pectin acetylesterase activity	2.80E-03
58	GO:0004084: branched-chain-amino-acid transaminase activity	2.80E-03
59	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.80E-03
60	GO:0016279: protein-lysine N-methyltransferase activity	2.80E-03
61	GO:0016836: hydro-lyase activity	2.80E-03
62	GO:0004045: aminoacyl-tRNA hydrolase activity	2.80E-03
63	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.54E-03
64	GO:0003989: acetyl-CoA carboxylase activity	3.59E-03
65	GO:0016208: AMP binding	4.44E-03
66	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.44E-03
67	GO:0008200: ion channel inhibitor activity	4.44E-03
68	GO:0080030: methyl indole-3-acetate esterase activity	4.44E-03
69	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.44E-03
70	GO:0015631: tubulin binding	5.35E-03
71	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.35E-03
72	GO:0004747: ribokinase activity	5.35E-03
73	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.35E-03
74	GO:0009881: photoreceptor activity	6.32E-03
75	GO:0043295: glutathione binding	6.32E-03
76	GO:0004427: inorganic diphosphatase activity	6.32E-03
77	GO:0008237: metallopeptidase activity	7.12E-03
78	GO:0005516: calmodulin binding	7.27E-03
79	GO:0008865: fructokinase activity	7.35E-03
80	GO:0008312: 7S RNA binding	7.35E-03
81	GO:0016413: O-acetyltransferase activity	7.56E-03
82	GO:0003735: structural constituent of ribosome	7.59E-03
83	GO:0016491: oxidoreductase activity	8.08E-03
84	GO:0005375: copper ion transmembrane transporter activity	8.43E-03
85	GO:0052689: carboxylic ester hydrolase activity	9.32E-03
86	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	9.58E-03
87	GO:0008236: serine-type peptidase activity	9.95E-03
88	GO:0005384: manganese ion transmembrane transporter activity	1.08E-02
89	GO:0047617: acyl-CoA hydrolase activity	1.08E-02
90	GO:0004222: metalloendopeptidase activity	1.16E-02
91	GO:0044183: protein binding involved in protein folding	1.33E-02
92	GO:0047372: acylglycerol lipase activity	1.33E-02
93	GO:0003993: acid phosphatase activity	1.39E-02
94	GO:0008378: galactosyltransferase activity	1.47E-02
95	GO:0004565: beta-galactosidase activity	1.61E-02
96	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.61E-02
97	GO:0004089: carbonate dehydratase activity	1.61E-02
98	GO:0015095: magnesium ion transmembrane transporter activity	1.61E-02
99	GO:0004519: endonuclease activity	1.64E-02
100	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.74E-02
101	GO:0008131: primary amine oxidase activity	1.75E-02
102	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.75E-02
103	GO:0051536: iron-sulfur cluster binding	2.21E-02
104	GO:0005528: FK506 binding	2.21E-02
105	GO:0004601: peroxidase activity	2.34E-02
106	GO:0008324: cation transmembrane transporter activity	2.37E-02
107	GO:0043424: protein histidine kinase binding	2.37E-02
108	GO:0005524: ATP binding	2.39E-02
109	GO:0003690: double-stranded DNA binding	2.40E-02
110	GO:0004176: ATP-dependent peptidase activity	2.53E-02
111	GO:0033612: receptor serine/threonine kinase binding	2.53E-02
112	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.53E-02
113	GO:0045330: aspartyl esterase activity	2.57E-02
114	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.70E-02
115	GO:0016887: ATPase activity	2.78E-02
116	GO:0003727: single-stranded RNA binding	3.05E-02
117	GO:0030599: pectinesterase activity	3.11E-02
118	GO:0004812: aminoacyl-tRNA ligase activity	3.23E-02
119	GO:0005102: receptor binding	3.23E-02
120	GO:0003713: transcription coactivator activity	3.60E-02
121	GO:0008080: N-acetyltransferase activity	3.60E-02
122	GO:0005355: glucose transmembrane transporter activity	3.79E-02
123	GO:0050662: coenzyme binding	3.79E-02
124	GO:0019901: protein kinase binding	3.99E-02
125	GO:0016758: transferase activity, transferring hexosyl groups	4.02E-02
126	GO:0004871: signal transducer activity	4.05E-02
127	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.24E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009507: chloroplast	1.69E-29
3	GO:0009570: chloroplast stroma	1.24E-19
4	GO:0009941: chloroplast envelope	3.12E-14
5	GO:0009579: thylakoid	4.52E-10
6	GO:0009543: chloroplast thylakoid lumen	1.06E-09
7	GO:0031977: thylakoid lumen	1.67E-07
8	GO:0009535: chloroplast thylakoid membrane	4.41E-07
9	GO:0031969: chloroplast membrane	1.42E-06
10	GO:0009534: chloroplast thylakoid	3.17E-06
11	GO:0010007: magnesium chelatase complex	2.60E-05
12	GO:0046658: anchored component of plasma membrane	2.16E-04
13	GO:0009536: plastid	2.63E-04
14	GO:0009533: chloroplast stromal thylakoid	3.84E-04
15	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.10E-04
16	GO:0031225: anchored component of membrane	7.98E-04
17	GO:0080085: signal recognition particle, chloroplast targeting	8.88E-04
18	GO:0010287: plastoglobule	1.66E-03
19	GO:0005886: plasma membrane	4.83E-03
20	GO:0005840: ribosome	4.94E-03
21	GO:0005618: cell wall	6.99E-03
22	GO:0009505: plant-type cell wall	7.27E-03
23	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	8.43E-03
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.58E-03
25	GO:0015934: large ribosomal subunit	1.21E-02
26	GO:0048046: apoplast	1.31E-02
27	GO:0000311: plastid large ribosomal subunit	1.47E-02
28	GO:0009508: plastid chromosome	1.61E-02
29	GO:0030659: cytoplasmic vesicle membrane	1.75E-02
30	GO:0030095: chloroplast photosystem II	1.75E-02
31	GO:0043234: protein complex	2.05E-02
32	GO:0005875: microtubule associated complex	2.05E-02
33	GO:0042651: thylakoid membrane	2.37E-02
34	GO:0009654: photosystem II oxygen evolving complex	2.37E-02
35	GO:0009706: chloroplast inner membrane	3.31E-02
36	GO:0019898: extrinsic component of membrane	3.99E-02