GO Enrichment Analysis of Co-expressed Genes with
AT4G39460
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 4 | GO:0045860: positive regulation of protein kinase activity | 0.00E+00 |
| 5 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 6 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 1.36E-05 |
| 7 | GO:0043266: regulation of potassium ion transport | 1.27E-04 |
| 8 | GO:0010480: microsporocyte differentiation | 1.27E-04 |
| 9 | GO:0031338: regulation of vesicle fusion | 1.27E-04 |
| 10 | GO:2000021: regulation of ion homeostasis | 1.27E-04 |
| 11 | GO:0045717: negative regulation of fatty acid biosynthetic process | 2.94E-04 |
| 12 | GO:0006518: peptide metabolic process | 4.86E-04 |
| 13 | GO:0090630: activation of GTPase activity | 4.86E-04 |
| 14 | GO:2001295: malonyl-CoA biosynthetic process | 4.86E-04 |
| 15 | GO:0015846: polyamine transport | 9.21E-04 |
| 16 | GO:0031122: cytoplasmic microtubule organization | 9.21E-04 |
| 17 | GO:0051781: positive regulation of cell division | 9.21E-04 |
| 18 | GO:0006552: leucine catabolic process | 9.21E-04 |
| 19 | GO:0000304: response to singlet oxygen | 1.16E-03 |
| 20 | GO:0007094: mitotic spindle assembly checkpoint | 1.16E-03 |
| 21 | GO:0071805: potassium ion transmembrane transport | 1.35E-03 |
| 22 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.43E-03 |
| 23 | GO:0006796: phosphate-containing compound metabolic process | 1.43E-03 |
| 24 | GO:0006574: valine catabolic process | 1.43E-03 |
| 25 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.43E-03 |
| 26 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.43E-03 |
| 27 | GO:0016126: sterol biosynthetic process | 1.51E-03 |
| 28 | GO:0009082: branched-chain amino acid biosynthetic process | 1.71E-03 |
| 29 | GO:0009942: longitudinal axis specification | 1.71E-03 |
| 30 | GO:0015995: chlorophyll biosynthetic process | 1.78E-03 |
| 31 | GO:0048437: floral organ development | 2.01E-03 |
| 32 | GO:0008610: lipid biosynthetic process | 2.32E-03 |
| 33 | GO:0032544: plastid translation | 2.65E-03 |
| 34 | GO:0071482: cellular response to light stimulus | 2.65E-03 |
| 35 | GO:0015996: chlorophyll catabolic process | 2.65E-03 |
| 36 | GO:0009657: plastid organization | 2.65E-03 |
| 37 | GO:0010206: photosystem II repair | 3.00E-03 |
| 38 | GO:0034765: regulation of ion transmembrane transport | 3.00E-03 |
| 39 | GO:0048507: meristem development | 3.00E-03 |
| 40 | GO:0007346: regulation of mitotic cell cycle | 3.36E-03 |
| 41 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.36E-03 |
| 42 | GO:0045036: protein targeting to chloroplast | 3.73E-03 |
| 43 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.73E-03 |
| 44 | GO:0019538: protein metabolic process | 3.73E-03 |
| 45 | GO:1903507: negative regulation of nucleic acid-templated transcription | 4.12E-03 |
| 46 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.12E-03 |
| 47 | GO:0048229: gametophyte development | 4.12E-03 |
| 48 | GO:0046856: phosphatidylinositol dephosphorylation | 4.12E-03 |
| 49 | GO:0006415: translational termination | 4.12E-03 |
| 50 | GO:0046686: response to cadmium ion | 4.16E-03 |
| 51 | GO:0012501: programmed cell death | 4.52E-03 |
| 52 | GO:0006820: anion transport | 4.52E-03 |
| 53 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.52E-03 |
| 54 | GO:0010075: regulation of meristem growth | 4.93E-03 |
| 55 | GO:0010102: lateral root morphogenesis | 4.93E-03 |
| 56 | GO:0009934: regulation of meristem structural organization | 5.36E-03 |
| 57 | GO:0071732: cellular response to nitric oxide | 5.80E-03 |
| 58 | GO:0007010: cytoskeleton organization | 6.71E-03 |
| 59 | GO:0008299: isoprenoid biosynthetic process | 7.19E-03 |
| 60 | GO:0031408: oxylipin biosynthetic process | 7.68E-03 |
| 61 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 8.18E-03 |
| 62 | GO:0080092: regulation of pollen tube growth | 8.18E-03 |
| 63 | GO:0071369: cellular response to ethylene stimulus | 8.69E-03 |
| 64 | GO:0009790: embryo development | 8.90E-03 |
| 65 | GO:0006633: fatty acid biosynthetic process | 9.58E-03 |
| 66 | GO:0016117: carotenoid biosynthetic process | 9.75E-03 |
| 67 | GO:0010051: xylem and phloem pattern formation | 1.03E-02 |
| 68 | GO:0048653: anther development | 1.03E-02 |
| 69 | GO:0042391: regulation of membrane potential | 1.03E-02 |
| 70 | GO:0010305: leaf vascular tissue pattern formation | 1.09E-02 |
| 71 | GO:0009791: post-embryonic development | 1.20E-02 |
| 72 | GO:0071554: cell wall organization or biogenesis | 1.26E-02 |
| 73 | GO:1901657: glycosyl compound metabolic process | 1.38E-02 |
| 74 | GO:0030163: protein catabolic process | 1.38E-02 |
| 75 | GO:0071281: cellular response to iron ion | 1.38E-02 |
| 76 | GO:0016125: sterol metabolic process | 1.44E-02 |
| 77 | GO:0005975: carbohydrate metabolic process | 1.45E-02 |
| 78 | GO:0010027: thylakoid membrane organization | 1.63E-02 |
| 79 | GO:0009816: defense response to bacterium, incompatible interaction | 1.70E-02 |
| 80 | GO:0018298: protein-chromophore linkage | 1.97E-02 |
| 81 | GO:0009817: defense response to fungus, incompatible interaction | 1.97E-02 |
| 82 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.10E-02 |
| 83 | GO:0006811: ion transport | 2.11E-02 |
| 84 | GO:0046777: protein autophosphorylation | 2.17E-02 |
| 85 | GO:0009793: embryo development ending in seed dormancy | 2.72E-02 |
| 86 | GO:0016042: lipid catabolic process | 2.91E-02 |
| 87 | GO:0016310: phosphorylation | 2.97E-02 |
| 88 | GO:0031347: regulation of defense response | 3.20E-02 |
| 89 | GO:0006812: cation transport | 3.29E-02 |
| 90 | GO:0042538: hyperosmotic salinity response | 3.29E-02 |
| 91 | GO:0009733: response to auxin | 3.44E-02 |
| 92 | GO:0006364: rRNA processing | 3.46E-02 |
| 93 | GO:0006813: potassium ion transport | 3.46E-02 |
| 94 | GO:0043086: negative regulation of catalytic activity | 3.89E-02 |
| 95 | GO:0048316: seed development | 3.98E-02 |
| 96 | GO:0042545: cell wall modification | 4.35E-02 |
| 97 | GO:0018105: peptidyl-serine phosphorylation | 4.53E-02 |
| 98 | GO:0006396: RNA processing | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019808: polyamine binding | 0.00E+00 |
| 2 | GO:0004676: 3-phosphoinositide-dependent protein kinase activity | 0.00E+00 |
| 3 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 4 | GO:0004496: mevalonate kinase activity | 0.00E+00 |
| 5 | GO:0004561: alpha-N-acetylglucosaminidase activity | 0.00E+00 |
| 6 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 7 | GO:0004856: xylulokinase activity | 1.27E-04 |
| 8 | GO:0008568: microtubule-severing ATPase activity | 1.27E-04 |
| 9 | GO:0034256: chlorophyll(ide) b reductase activity | 1.27E-04 |
| 10 | GO:0004163: diphosphomevalonate decarboxylase activity | 1.27E-04 |
| 11 | GO:0030941: chloroplast targeting sequence binding | 1.27E-04 |
| 12 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.27E-04 |
| 13 | GO:0005227: calcium activated cation channel activity | 1.27E-04 |
| 14 | GO:0004075: biotin carboxylase activity | 4.86E-04 |
| 15 | GO:0030267: glyoxylate reductase (NADP) activity | 4.86E-04 |
| 16 | GO:0070402: NADPH binding | 4.86E-04 |
| 17 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 4.86E-04 |
| 18 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 4.86E-04 |
| 19 | GO:0003913: DNA photolyase activity | 4.86E-04 |
| 20 | GO:0016149: translation release factor activity, codon specific | 6.95E-04 |
| 21 | GO:0052656: L-isoleucine transaminase activity | 6.95E-04 |
| 22 | GO:0043023: ribosomal large subunit binding | 6.95E-04 |
| 23 | GO:0052654: L-leucine transaminase activity | 6.95E-04 |
| 24 | GO:0052655: L-valine transaminase activity | 6.95E-04 |
| 25 | GO:0004445: inositol-polyphosphate 5-phosphatase activity | 6.95E-04 |
| 26 | GO:0051861: glycolipid binding | 9.21E-04 |
| 27 | GO:0004084: branched-chain-amino-acid transaminase activity | 9.21E-04 |
| 28 | GO:0003989: acetyl-CoA carboxylase activity | 1.16E-03 |
| 29 | GO:0008381: mechanically-gated ion channel activity | 1.16E-03 |
| 30 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.16E-03 |
| 31 | GO:0017137: Rab GTPase binding | 1.16E-03 |
| 32 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 1.43E-03 |
| 33 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.43E-03 |
| 34 | GO:0042578: phosphoric ester hydrolase activity | 1.43E-03 |
| 35 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.71E-03 |
| 36 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.71E-03 |
| 37 | GO:0005242: inward rectifier potassium channel activity | 1.71E-03 |
| 38 | GO:0051920: peroxiredoxin activity | 1.71E-03 |
| 39 | GO:0015631: tubulin binding | 1.71E-03 |
| 40 | GO:0070300: phosphatidic acid binding | 1.71E-03 |
| 41 | GO:0004427: inorganic diphosphatase activity | 2.01E-03 |
| 42 | GO:0009881: photoreceptor activity | 2.01E-03 |
| 43 | GO:0042802: identical protein binding | 2.14E-03 |
| 44 | GO:0043022: ribosome binding | 2.32E-03 |
| 45 | GO:0016209: antioxidant activity | 2.32E-03 |
| 46 | GO:0004033: aldo-keto reductase (NADP) activity | 2.32E-03 |
| 47 | GO:0016788: hydrolase activity, acting on ester bonds | 2.81E-03 |
| 48 | GO:0003747: translation release factor activity | 3.00E-03 |
| 49 | GO:0047617: acyl-CoA hydrolase activity | 3.36E-03 |
| 50 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 4.12E-03 |
| 51 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 4.52E-03 |
| 52 | GO:0004565: beta-galactosidase activity | 4.93E-03 |
| 53 | GO:0004190: aspartic-type endopeptidase activity | 5.80E-03 |
| 54 | GO:0005528: FK506 binding | 6.71E-03 |
| 55 | GO:0003714: transcription corepressor activity | 6.71E-03 |
| 56 | GO:0015079: potassium ion transmembrane transporter activity | 7.19E-03 |
| 57 | GO:0004176: ATP-dependent peptidase activity | 7.68E-03 |
| 58 | GO:0033612: receptor serine/threonine kinase binding | 7.68E-03 |
| 59 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.82E-03 |
| 60 | GO:0005249: voltage-gated potassium channel activity | 1.03E-02 |
| 61 | GO:0030551: cyclic nucleotide binding | 1.03E-02 |
| 62 | GO:0016853: isomerase activity | 1.14E-02 |
| 63 | GO:0019901: protein kinase binding | 1.20E-02 |
| 64 | GO:0008237: metallopeptidase activity | 1.50E-02 |
| 65 | GO:0016413: O-acetyltransferase activity | 1.57E-02 |
| 66 | GO:0004721: phosphoprotein phosphatase activity | 1.83E-02 |
| 67 | GO:0102483: scopolin beta-glucosidase activity | 1.83E-02 |
| 68 | GO:0008236: serine-type peptidase activity | 1.90E-02 |
| 69 | GO:0016301: kinase activity | 1.99E-02 |
| 70 | GO:0008233: peptidase activity | 1.99E-02 |
| 71 | GO:0004497: monooxygenase activity | 2.03E-02 |
| 72 | GO:0005096: GTPase activator activity | 2.04E-02 |
| 73 | GO:0005515: protein binding | 2.08E-02 |
| 74 | GO:0004222: metalloendopeptidase activity | 2.11E-02 |
| 75 | GO:0030145: manganese ion binding | 2.19E-02 |
| 76 | GO:0052689: carboxylic ester hydrolase activity | 2.24E-02 |
| 77 | GO:0008422: beta-glucosidase activity | 2.48E-02 |
| 78 | GO:0043621: protein self-association | 2.96E-02 |
| 79 | GO:0035091: phosphatidylinositol binding | 2.96E-02 |
| 80 | GO:0004674: protein serine/threonine kinase activity | 3.01E-02 |
| 81 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.12E-02 |
| 82 | GO:0003777: microtubule motor activity | 3.72E-02 |
| 83 | GO:0045330: aspartyl esterase activity | 3.72E-02 |
| 84 | GO:0016491: oxidoreductase activity | 4.18E-02 |
| 85 | GO:0030599: pectinesterase activity | 4.26E-02 |
| 86 | GO:0016887: ATPase activity | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042597: periplasmic space | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 5.31E-09 |
| 3 | GO:0009570: chloroplast stroma | 2.94E-07 |
| 4 | GO:0009941: chloroplast envelope | 7.58E-05 |
| 5 | GO:0009534: chloroplast thylakoid | 7.77E-04 |
| 6 | GO:0005828: kinetochore microtubule | 9.21E-04 |
| 7 | GO:0010287: plastoglobule | 9.92E-04 |
| 8 | GO:0000776: kinetochore | 1.16E-03 |
| 9 | GO:0000777: condensed chromosome kinetochore | 1.71E-03 |
| 10 | GO:0010369: chromocenter | 1.71E-03 |
| 11 | GO:0031359: integral component of chloroplast outer membrane | 2.01E-03 |
| 12 | GO:0005876: spindle microtubule | 3.36E-03 |
| 13 | GO:0009579: thylakoid | 3.48E-03 |
| 14 | GO:0016324: apical plasma membrane | 3.73E-03 |
| 15 | GO:0043234: protein complex | 6.25E-03 |
| 16 | GO:0009543: chloroplast thylakoid lumen | 7.62E-03 |
| 17 | GO:0009535: chloroplast thylakoid membrane | 7.82E-03 |
| 18 | GO:0009536: plastid | 1.05E-02 |
| 19 | GO:0009707: chloroplast outer membrane | 1.97E-02 |
| 20 | GO:0031969: chloroplast membrane | 2.03E-02 |
| 21 | GO:0031977: thylakoid lumen | 2.64E-02 |
| 22 | GO:0009506: plasmodesma | 2.84E-02 |
| 23 | GO:0005635: nuclear envelope | 3.63E-02 |
| 24 | GO:0009505: plant-type cell wall | 3.94E-02 |
| 25 | GO:0012505: endomembrane system | 4.35E-02 |
| 26 | GO:0005886: plasma membrane | 4.86E-02 |