co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
2	GO:0002376: immune system process	0.00E+00
3	GO:0030149: sphingolipid catabolic process	0.00E+00
4	GO:0006592: ornithine biosynthetic process	0.00E+00
5	GO:0006014: D-ribose metabolic process	1.83E-05
6	GO:0010726: positive regulation of hydrogen peroxide metabolic process	8.78E-05
7	GO:0035266: meristem growth	8.78E-05
8	GO:0007292: female gamete generation	8.78E-05
9	GO:0051788: response to misfolded protein	2.08E-04
10	GO:0006101: citrate metabolic process	2.08E-04
11	GO:0019752: carboxylic acid metabolic process	2.08E-04
12	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	2.08E-04
13	GO:0008535: respiratory chain complex IV assembly	2.08E-04
14	GO:0090351: seedling development	2.16E-04
15	GO:0060968: regulation of gene silencing	3.48E-04
16	GO:0009062: fatty acid catabolic process	3.48E-04
17	GO:0072334: UDP-galactose transmembrane transport	5.01E-04
18	GO:0033014: tetrapyrrole biosynthetic process	5.01E-04
19	GO:0001676: long-chain fatty acid metabolic process	5.01E-04
20	GO:0000187: activation of MAPK activity	5.01E-04
21	GO:0019252: starch biosynthetic process	6.17E-04
22	GO:0000302: response to reactive oxygen species	6.59E-04
23	GO:2000038: regulation of stomatal complex development	6.66E-04
24	GO:0080037: negative regulation of cytokinin-activated signaling pathway	6.66E-04
25	GO:0046345: abscisic acid catabolic process	6.66E-04
26	GO:0010387: COP9 signalosome assembly	6.66E-04
27	GO:0000304: response to singlet oxygen	8.44E-04
28	GO:0009697: salicylic acid biosynthetic process	8.44E-04
29	GO:2000762: regulation of phenylpropanoid metabolic process	8.44E-04
30	GO:0006097: glyoxylate cycle	8.44E-04
31	GO:0007029: endoplasmic reticulum organization	8.44E-04
32	GO:0010150: leaf senescence	8.48E-04
33	GO:0043248: proteasome assembly	1.03E-03
34	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.03E-03
35	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.03E-03
36	GO:0010942: positive regulation of cell death	1.03E-03
37	GO:0010405: arabinogalactan protein metabolic process	1.03E-03
38	GO:0048827: phyllome development	1.03E-03
39	GO:0048232: male gamete generation	1.03E-03
40	GO:0008219: cell death	1.21E-03
41	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.23E-03
42	GO:2000037: regulation of stomatal complex patterning	1.23E-03
43	GO:1900056: negative regulation of leaf senescence	1.44E-03
44	GO:0000338: protein deneddylation	1.44E-03
45	GO:0043090: amino acid import	1.44E-03
46	GO:0045087: innate immune response	1.52E-03
47	GO:0006099: tricarboxylic acid cycle	1.58E-03
48	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.66E-03
49	GO:0009819: drought recovery	1.66E-03
50	GO:0030162: regulation of proteolysis	1.66E-03
51	GO:0030091: protein repair	1.66E-03
52	GO:0010078: maintenance of root meristem identity	1.66E-03
53	GO:0006102: isocitrate metabolic process	1.66E-03
54	GO:0006526: arginine biosynthetic process	1.89E-03
55	GO:0030968: endoplasmic reticulum unfolded protein response	1.89E-03
56	GO:0009808: lignin metabolic process	1.89E-03
57	GO:0006511: ubiquitin-dependent protein catabolic process	1.95E-03
58	GO:0006783: heme biosynthetic process	2.14E-03
59	GO:0046685: response to arsenic-containing substance	2.14E-03
60	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.39E-03
61	GO:0006486: protein glycosylation	2.61E-03
62	GO:0007064: mitotic sister chromatid cohesion	2.65E-03
63	GO:0048829: root cap development	2.65E-03
64	GO:0010015: root morphogenesis	2.93E-03
65	GO:0009626: plant-type hypersensitive response	3.27E-03
66	GO:0010229: inflorescence development	3.50E-03
67	GO:0006979: response to oxidative stress	3.63E-03
68	GO:0002237: response to molecule of bacterial origin	3.80E-03
69	GO:0009933: meristem structural organization	3.80E-03
70	GO:0000162: tryptophan biosynthetic process	4.42E-03
71	GO:0009863: salicylic acid mediated signaling pathway	4.74E-03
72	GO:0080147: root hair cell development	4.74E-03
73	GO:2000377: regulation of reactive oxygen species metabolic process	4.74E-03
74	GO:0009814: defense response, incompatible interaction	5.76E-03
75	GO:0030433: ubiquitin-dependent ERAD pathway	5.76E-03
76	GO:0031348: negative regulation of defense response	5.76E-03
77	GO:0071456: cellular response to hypoxia	5.76E-03
78	GO:0009411: response to UV	6.12E-03
79	GO:0009625: response to insect	6.12E-03
80	GO:0010227: floral organ abscission	6.12E-03
81	GO:0010584: pollen exine formation	6.48E-03
82	GO:0046686: response to cadmium ion	7.01E-03
83	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	7.11E-03
84	GO:0042631: cellular response to water deprivation	7.24E-03
85	GO:0009617: response to bacterium	7.58E-03
86	GO:0006520: cellular amino acid metabolic process	7.62E-03
87	GO:0009646: response to absence of light	8.02E-03
88	GO:0002229: defense response to oomycetes	8.83E-03
89	GO:0010193: response to ozone	8.83E-03
90	GO:0006635: fatty acid beta-oxidation	8.83E-03
91	GO:0030163: protein catabolic process	9.67E-03
92	GO:0007275: multicellular organism development	9.98E-03
93	GO:0009607: response to biotic stimulus	1.19E-02
94	GO:0015995: chlorophyll biosynthetic process	1.28E-02
95	GO:0016311: dephosphorylation	1.33E-02
96	GO:0010311: lateral root formation	1.43E-02
97	GO:0006499: N-terminal protein myristoylation	1.48E-02
98	GO:0006865: amino acid transport	1.58E-02
99	GO:0042742: defense response to bacterium	1.58E-02
100	GO:0016051: carbohydrate biosynthetic process	1.63E-02
101	GO:0032259: methylation	1.73E-02
102	GO:0006631: fatty acid metabolic process	1.84E-02
103	GO:0006508: proteolysis	1.95E-02
104	GO:0009640: photomorphogenesis	1.95E-02
105	GO:0009965: leaf morphogenesis	2.12E-02
106	GO:0006855: drug transmembrane transport	2.18E-02
107	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.24E-02
108	GO:0000165: MAPK cascade	2.24E-02
109	GO:0009846: pollen germination	2.29E-02
110	GO:0009809: lignin biosynthetic process	2.41E-02
111	GO:0009585: red, far-red light phototransduction	2.41E-02
112	GO:0051603: proteolysis involved in cellular protein catabolic process	2.47E-02
113	GO:0009909: regulation of flower development	2.60E-02
114	GO:0006468: protein phosphorylation	2.72E-02
115	GO:0048367: shoot system development	2.78E-02
116	GO:0009624: response to nematode	3.10E-02
117	GO:0009416: response to light stimulus	3.21E-02
118	GO:0009737: response to abscisic acid	4.05E-02
119	GO:0009790: embryo development	4.06E-02
120	GO:0006633: fatty acid biosynthetic process	4.28E-02
121	GO:0040008: regulation of growth	4.43E-02
122	GO:0006952: defense response	4.62E-02
123	GO:0016310: phosphorylation	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0008777: acetylornithine deacetylase activity	0.00E+00
3	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	1.01E-05
5	GO:0004747: ribokinase activity	2.61E-05
6	GO:0008233: peptidase activity	2.64E-05
7	GO:0008865: fructokinase activity	4.65E-05
8	GO:0004325: ferrochelatase activity	8.78E-05
9	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	8.78E-05
10	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	8.78E-05
11	GO:0008809: carnitine racemase activity	8.78E-05
12	GO:0004425: indole-3-glycerol-phosphate synthase activity	8.78E-05
13	GO:0003994: aconitate hydratase activity	2.08E-04
14	GO:0000030: mannosyltransferase activity	3.48E-04
15	GO:0016746: transferase activity, transferring acyl groups	4.43E-04
16	GO:0004165: dodecenoyl-CoA delta-isomerase activity	5.01E-04
17	GO:0031176: endo-1,4-beta-xylanase activity	5.01E-04
18	GO:0005459: UDP-galactose transmembrane transporter activity	8.44E-04
19	GO:0010294: abscisic acid glucosyltransferase activity	8.44E-04
20	GO:0036402: proteasome-activating ATPase activity	1.03E-03
21	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.03E-03
22	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.23E-03
23	GO:0102391: decanoate--CoA ligase activity	1.23E-03
24	GO:0004656: procollagen-proline 4-dioxygenase activity	1.23E-03
25	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	1.23E-03
26	GO:0016831: carboxy-lyase activity	1.44E-03
27	GO:0008320: protein transmembrane transporter activity	1.44E-03
28	GO:0004467: long-chain fatty acid-CoA ligase activity	1.44E-03
29	GO:0004708: MAP kinase kinase activity	1.66E-03
30	GO:0071949: FAD binding	2.14E-03
31	GO:0016301: kinase activity	2.19E-03
32	GO:0004713: protein tyrosine kinase activity	2.65E-03
33	GO:0008171: O-methyltransferase activity	2.65E-03
34	GO:0005524: ATP binding	2.71E-03
35	GO:0004129: cytochrome-c oxidase activity	2.93E-03
36	GO:0008794: arsenate reductase (glutaredoxin) activity	2.93E-03
37	GO:0008378: galactosyltransferase activity	3.21E-03
38	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.37E-03
39	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.37E-03
40	GO:0017025: TBP-class protein binding	4.10E-03
41	GO:0003712: transcription cofactor activity	4.10E-03
42	GO:0016758: transferase activity, transferring hexosyl groups	4.49E-03
43	GO:0031418: L-ascorbic acid binding	4.74E-03
44	GO:0008194: UDP-glycosyltransferase activity	7.11E-03
45	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.05E-02
46	GO:0008237: metallopeptidase activity	1.05E-02
47	GO:0004674: protein serine/threonine kinase activity	1.26E-02
48	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.33E-02
49	GO:0015238: drug transmembrane transporter activity	1.43E-02
50	GO:0004222: metalloendopeptidase activity	1.48E-02
51	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.63E-02
52	GO:0003993: acid phosphatase activity	1.68E-02
53	GO:0003824: catalytic activity	1.77E-02
54	GO:0051539: 4 iron, 4 sulfur cluster binding	1.79E-02
55	GO:0004364: glutathione transferase activity	1.90E-02
56	GO:0015293: symporter activity	2.12E-02
57	GO:0015171: amino acid transmembrane transporter activity	2.60E-02
58	GO:0031625: ubiquitin protein ligase binding	2.60E-02
59	GO:0016887: ATPase activity	2.80E-02
60	GO:0015035: protein disulfide oxidoreductase activity	3.17E-02
61	GO:0030170: pyridoxal phosphate binding	3.92E-02
62	GO:0030246: carbohydrate binding	4.30E-02
63	GO:0015297: antiporter activity	4.43E-02
64	GO:0005507: copper ion binding	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0005839: proteasome core complex	1.01E-05
2	GO:0000502: proteasome complex	1.62E-05
3	GO:0019773: proteasome core complex, alpha-subunit complex	5.90E-05
4	GO:0005789: endoplasmic reticulum membrane	6.82E-05
5	GO:0045252: oxoglutarate dehydrogenase complex	8.78E-05
6	GO:0030134: ER to Golgi transport vesicle	2.08E-04
7	GO:0046861: glyoxysomal membrane	3.48E-04
8	GO:0005886: plasma membrane	7.68E-04
9	GO:0005746: mitochondrial respiratory chain	8.44E-04
10	GO:0005801: cis-Golgi network	1.23E-03
11	GO:0031597: cytosolic proteasome complex	1.23E-03
12	GO:0030173: integral component of Golgi membrane	1.23E-03
13	GO:0031595: nuclear proteasome complex	1.44E-03
14	GO:0009514: glyoxysome	1.89E-03
15	GO:0005829: cytosol	1.95E-03
16	GO:0008180: COP9 signalosome	2.14E-03
17	GO:0008540: proteasome regulatory particle, base subcomplex	2.39E-03
18	GO:0005740: mitochondrial envelope	2.65E-03
19	GO:0016020: membrane	3.38E-03
20	GO:0030176: integral component of endoplasmic reticulum membrane	4.10E-03
21	GO:0005741: mitochondrial outer membrane	5.42E-03
22	GO:0005783: endoplasmic reticulum	7.65E-03
23	GO:0016021: integral component of membrane	9.39E-03
24	GO:0031969: chloroplast membrane	1.22E-02
25	GO:0019005: SCF ubiquitin ligase complex	1.38E-02
26	GO:0005777: peroxisome	3.68E-02
27	GO:0005773: vacuole	4.34E-02