GO Enrichment Analysis of Co-expressed Genes with
AT4G38860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0042549: photosystem II stabilization | 1.13E-05 |
| 3 | GO:0042371: vitamin K biosynthetic process | 6.58E-05 |
| 4 | GO:0006949: syncytium formation | 6.92E-05 |
| 5 | GO:0009735: response to cytokinin | 8.13E-05 |
| 6 | GO:0010207: photosystem II assembly | 1.27E-04 |
| 7 | GO:0034755: iron ion transmembrane transport | 1.59E-04 |
| 8 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.62E-04 |
| 9 | GO:0009800: cinnamic acid biosynthetic process | 3.90E-04 |
| 10 | GO:2001141: regulation of RNA biosynthetic process | 3.90E-04 |
| 11 | GO:1902476: chloride transmembrane transport | 3.90E-04 |
| 12 | GO:0051513: regulation of monopolar cell growth | 3.90E-04 |
| 13 | GO:2000038: regulation of stomatal complex development | 5.20E-04 |
| 14 | GO:0015976: carbon utilization | 5.20E-04 |
| 15 | GO:0009828: plant-type cell wall loosening | 5.49E-04 |
| 16 | GO:0032876: negative regulation of DNA endoreduplication | 6.60E-04 |
| 17 | GO:0030308: negative regulation of cell growth | 6.60E-04 |
| 18 | GO:0006559: L-phenylalanine catabolic process | 8.06E-04 |
| 19 | GO:0009826: unidimensional cell growth | 8.63E-04 |
| 20 | GO:0010019: chloroplast-nucleus signaling pathway | 9.59E-04 |
| 21 | GO:2000037: regulation of stomatal complex patterning | 9.59E-04 |
| 22 | GO:0006821: chloride transport | 1.12E-03 |
| 23 | GO:0009610: response to symbiotic fungus | 1.12E-03 |
| 24 | GO:0050829: defense response to Gram-negative bacterium | 1.12E-03 |
| 25 | GO:0042255: ribosome assembly | 1.29E-03 |
| 26 | GO:0010114: response to red light | 1.34E-03 |
| 27 | GO:0009744: response to sucrose | 1.34E-03 |
| 28 | GO:0009699: phenylpropanoid biosynthetic process | 1.47E-03 |
| 29 | GO:0071482: cellular response to light stimulus | 1.47E-03 |
| 30 | GO:0009657: plastid organization | 1.47E-03 |
| 31 | GO:0009051: pentose-phosphate shunt, oxidative branch | 1.65E-03 |
| 32 | GO:0009664: plant-type cell wall organization | 1.67E-03 |
| 33 | GO:0010205: photoinhibition | 1.85E-03 |
| 34 | GO:0009299: mRNA transcription | 2.05E-03 |
| 35 | GO:0019684: photosynthesis, light reaction | 2.26E-03 |
| 36 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.26E-03 |
| 37 | GO:0043085: positive regulation of catalytic activity | 2.26E-03 |
| 38 | GO:0006879: cellular iron ion homeostasis | 2.26E-03 |
| 39 | GO:0006352: DNA-templated transcription, initiation | 2.26E-03 |
| 40 | GO:0009750: response to fructose | 2.26E-03 |
| 41 | GO:0009698: phenylpropanoid metabolic process | 2.26E-03 |
| 42 | GO:0009740: gibberellic acid mediated signaling pathway | 2.38E-03 |
| 43 | GO:0042545: cell wall modification | 2.46E-03 |
| 44 | GO:0015706: nitrate transport | 2.48E-03 |
| 45 | GO:0008361: regulation of cell size | 2.48E-03 |
| 46 | GO:0006006: glucose metabolic process | 2.70E-03 |
| 47 | GO:0009725: response to hormone | 2.70E-03 |
| 48 | GO:0010167: response to nitrate | 3.16E-03 |
| 49 | GO:0040008: regulation of growth | 4.14E-03 |
| 50 | GO:0031408: oxylipin biosynthetic process | 4.17E-03 |
| 51 | GO:0007623: circadian rhythm | 4.34E-03 |
| 52 | GO:0045490: pectin catabolic process | 4.34E-03 |
| 53 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 4.70E-03 |
| 54 | GO:0009739: response to gibberellin | 4.85E-03 |
| 55 | GO:0006284: base-excision repair | 4.98E-03 |
| 56 | GO:0009561: megagametogenesis | 4.98E-03 |
| 57 | GO:0000413: protein peptidyl-prolyl isomerization | 5.55E-03 |
| 58 | GO:0010087: phloem or xylem histogenesis | 5.55E-03 |
| 59 | GO:0042631: cellular response to water deprivation | 5.55E-03 |
| 60 | GO:0009749: response to glucose | 6.45E-03 |
| 61 | GO:0032502: developmental process | 7.08E-03 |
| 62 | GO:0006412: translation | 7.08E-03 |
| 63 | GO:0010090: trichome morphogenesis | 7.40E-03 |
| 64 | GO:0080167: response to karrikin | 8.30E-03 |
| 65 | GO:0010027: thylakoid membrane organization | 8.74E-03 |
| 66 | GO:0042128: nitrate assimilation | 9.44E-03 |
| 67 | GO:0042742: defense response to bacterium | 9.67E-03 |
| 68 | GO:0010411: xyloglucan metabolic process | 9.79E-03 |
| 69 | GO:0015995: chlorophyll biosynthetic process | 9.79E-03 |
| 70 | GO:0000160: phosphorelay signal transduction system | 1.09E-02 |
| 71 | GO:0009733: response to auxin | 1.12E-02 |
| 72 | GO:0010119: regulation of stomatal movement | 1.17E-02 |
| 73 | GO:0009409: response to cold | 1.42E-02 |
| 74 | GO:0042546: cell wall biogenesis | 1.53E-02 |
| 75 | GO:0009736: cytokinin-activated signaling pathway | 1.84E-02 |
| 76 | GO:0006417: regulation of translation | 1.98E-02 |
| 77 | GO:0006396: RNA processing | 2.41E-02 |
| 78 | GO:0055114: oxidation-reduction process | 2.45E-02 |
| 79 | GO:0009742: brassinosteroid mediated signaling pathway | 2.46E-02 |
| 80 | GO:0006457: protein folding | 2.83E-02 |
| 81 | GO:0006633: fatty acid biosynthetic process | 3.26E-02 |
| 82 | GO:0009451: RNA modification | 3.54E-02 |
| 83 | GO:0008380: RNA splicing | 3.95E-02 |
| 84 | GO:0006979: response to oxidative stress | 4.44E-02 |
| 85 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 4.50E-02 |
| 86 | GO:0009658: chloroplast organization | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 4 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 5 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.35E-06 |
| 6 | GO:0019843: rRNA binding | 2.40E-05 |
| 7 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.77E-05 |
| 8 | GO:0046906: tetrapyrrole binding | 6.58E-05 |
| 9 | GO:0009671: nitrate:proton symporter activity | 6.58E-05 |
| 10 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 1.59E-04 |
| 11 | GO:0042389: omega-3 fatty acid desaturase activity | 1.59E-04 |
| 12 | GO:0043425: bHLH transcription factor binding | 1.59E-04 |
| 13 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 1.59E-04 |
| 14 | GO:0005528: FK506 binding | 1.81E-04 |
| 15 | GO:0045548: phenylalanine ammonia-lyase activity | 2.69E-04 |
| 16 | GO:0003727: single-stranded RNA binding | 2.92E-04 |
| 17 | GO:0005253: anion channel activity | 5.20E-04 |
| 18 | GO:0001053: plastid sigma factor activity | 5.20E-04 |
| 19 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 5.20E-04 |
| 20 | GO:0016987: sigma factor activity | 5.20E-04 |
| 21 | GO:0008725: DNA-3-methyladenine glycosylase activity | 6.60E-04 |
| 22 | GO:0005247: voltage-gated chloride channel activity | 8.06E-04 |
| 23 | GO:0019899: enzyme binding | 1.12E-03 |
| 24 | GO:0003735: structural constituent of ribosome | 1.31E-03 |
| 25 | GO:0015112: nitrate transmembrane transporter activity | 1.85E-03 |
| 26 | GO:0005381: iron ion transmembrane transporter activity | 1.85E-03 |
| 27 | GO:0045330: aspartyl esterase activity | 1.98E-03 |
| 28 | GO:0030599: pectinesterase activity | 2.38E-03 |
| 29 | GO:0004089: carbonate dehydratase activity | 2.70E-03 |
| 30 | GO:0031072: heat shock protein binding | 2.70E-03 |
| 31 | GO:0008146: sulfotransferase activity | 3.16E-03 |
| 32 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 6.76E-03 |
| 33 | GO:0000156: phosphorelay response regulator activity | 7.40E-03 |
| 34 | GO:0016597: amino acid binding | 8.40E-03 |
| 35 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 9.79E-03 |
| 36 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.02E-02 |
| 37 | GO:0003993: acid phosphatase activity | 1.28E-02 |
| 38 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.28E-02 |
| 39 | GO:0050661: NADP binding | 1.36E-02 |
| 40 | GO:0046983: protein dimerization activity | 1.40E-02 |
| 41 | GO:0004185: serine-type carboxypeptidase activity | 1.49E-02 |
| 42 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.57E-02 |
| 43 | GO:0043621: protein self-association | 1.57E-02 |
| 44 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.84E-02 |
| 45 | GO:0003690: double-stranded DNA binding | 1.88E-02 |
| 46 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.12E-02 |
| 47 | GO:0051082: unfolded protein binding | 2.36E-02 |
| 48 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.32E-02 |
| 49 | GO:0046910: pectinesterase inhibitor activity | 3.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.13E-13 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 6.28E-08 |
| 4 | GO:0009941: chloroplast envelope | 1.88E-07 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 8.95E-07 |
| 6 | GO:0009570: chloroplast stroma | 9.58E-07 |
| 7 | GO:0009534: chloroplast thylakoid | 1.04E-06 |
| 8 | GO:0000311: plastid large ribosomal subunit | 9.59E-05 |
| 9 | GO:0000312: plastid small ribosomal subunit | 1.27E-04 |
| 10 | GO:0009579: thylakoid | 1.42E-04 |
| 11 | GO:0042170: plastid membrane | 1.59E-04 |
| 12 | GO:0042646: plastid nucleoid | 3.90E-04 |
| 13 | GO:0034707: chloride channel complex | 8.06E-04 |
| 14 | GO:0016363: nuclear matrix | 9.59E-04 |
| 15 | GO:0005762: mitochondrial large ribosomal subunit | 9.59E-04 |
| 16 | GO:0015934: large ribosomal subunit | 9.63E-04 |
| 17 | GO:0031969: chloroplast membrane | 1.18E-03 |
| 18 | GO:0031977: thylakoid lumen | 1.24E-03 |
| 19 | GO:0005763: mitochondrial small ribosomal subunit | 1.65E-03 |
| 20 | GO:0009505: plant-type cell wall | 2.80E-03 |
| 21 | GO:0005618: cell wall | 4.40E-03 |
| 22 | GO:0009522: photosystem I | 6.15E-03 |
| 23 | GO:0009523: photosystem II | 6.45E-03 |
| 24 | GO:0071944: cell periphery | 7.40E-03 |
| 25 | GO:0010319: stromule | 8.06E-03 |
| 26 | GO:0009295: nucleoid | 8.06E-03 |
| 27 | GO:0009706: chloroplast inner membrane | 2.36E-02 |
| 28 | GO:0016020: membrane | 3.37E-02 |
| 29 | GO:0009705: plant-type vacuole membrane | 3.49E-02 |
| 30 | GO:0022627: cytosolic small ribosomal subunit | 4.26E-02 |