co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38770

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019284: L-methionine salvage from S-adenosylmethionine	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
7	GO:0005996: monosaccharide metabolic process	0.00E+00
8	GO:0015979: photosynthesis	1.05E-13
9	GO:0009773: photosynthetic electron transport in photosystem I	7.98E-12
10	GO:0015995: chlorophyll biosynthetic process	1.34E-06
11	GO:0009735: response to cytokinin	2.45E-06
12	GO:0034755: iron ion transmembrane transport	9.99E-06
13	GO:0030388: fructose 1,6-bisphosphate metabolic process	9.99E-06
14	GO:0010196: nonphotochemical quenching	1.67E-05
15	GO:0006810: transport	2.09E-05
16	GO:0006000: fructose metabolic process	3.40E-05
17	GO:0010218: response to far red light	3.87E-05
18	GO:0010206: photosystem II repair	4.75E-05
19	GO:0034220: ion transmembrane transport	5.90E-05
20	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.31E-05
21	GO:0080170: hydrogen peroxide transmembrane transport	7.31E-05
22	GO:0010037: response to carbon dioxide	1.27E-04
23	GO:0015976: carbon utilization	1.27E-04
24	GO:0045727: positive regulation of translation	1.27E-04
25	GO:2000122: negative regulation of stomatal complex development	1.27E-04
26	GO:0006546: glycine catabolic process	1.27E-04
27	GO:0006833: water transport	2.48E-04
28	GO:0042549: photosystem II stabilization	2.78E-04
29	GO:0018298: protein-chromophore linkage	3.08E-04
30	GO:0009768: photosynthesis, light harvesting in photosystem I	3.28E-04
31	GO:0010019: chloroplast-nucleus signaling pathway	3.72E-04
32	GO:0071370: cellular response to gibberellin stimulus	4.76E-04
33	GO:0006824: cobalt ion transport	4.76E-04
34	GO:0010480: microsporocyte differentiation	4.76E-04
35	GO:0000481: maturation of 5S rRNA	4.76E-04
36	GO:0033206: meiotic cytokinesis	4.76E-04
37	GO:0071461: cellular response to redox state	4.76E-04
38	GO:0034337: RNA folding	4.76E-04
39	GO:0071588: hydrogen peroxide mediated signaling pathway	4.76E-04
40	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.76E-04
41	GO:0060627: regulation of vesicle-mediated transport	4.76E-04
42	GO:0043489: RNA stabilization	4.76E-04
43	GO:0010114: response to red light	6.70E-04
44	GO:0009657: plastid organization	7.27E-04
45	GO:0032544: plastid translation	7.27E-04
46	GO:0006002: fructose 6-phosphate metabolic process	7.27E-04
47	GO:0042742: defense response to bacterium	8.73E-04
48	GO:0010541: acropetal auxin transport	1.02E-03
49	GO:0010205: photoinhibition	1.02E-03
50	GO:0009638: phototropism	1.02E-03
51	GO:0080005: photosystem stoichiometry adjustment	1.02E-03
52	GO:0010027: thylakoid membrane organization	1.47E-03
53	GO:0006013: mannose metabolic process	1.67E-03
54	GO:0010160: formation of animal organ boundary	1.67E-03
55	GO:0045493: xylan catabolic process	1.67E-03
56	GO:2001295: malonyl-CoA biosynthetic process	1.67E-03
57	GO:0090391: granum assembly	1.67E-03
58	GO:0006518: peptide metabolic process	1.67E-03
59	GO:0006094: gluconeogenesis	1.79E-03
60	GO:0005986: sucrose biosynthetic process	1.79E-03
61	GO:0009409: response to cold	1.91E-03
62	GO:0008152: metabolic process	1.97E-03
63	GO:0019253: reductive pentose-phosphate cycle	2.02E-03
64	GO:0010143: cutin biosynthetic process	2.02E-03
65	GO:0010207: photosystem II assembly	2.02E-03
66	GO:0009817: defense response to fungus, incompatible interaction	2.06E-03
67	GO:0005985: sucrose metabolic process	2.26E-03
68	GO:1901332: negative regulation of lateral root development	2.42E-03
69	GO:2001141: regulation of RNA biosynthetic process	2.42E-03
70	GO:0046836: glycolipid transport	2.42E-03
71	GO:0051513: regulation of monopolar cell growth	2.42E-03
72	GO:0071484: cellular response to light intensity	2.42E-03
73	GO:0009152: purine ribonucleotide biosynthetic process	2.42E-03
74	GO:0046653: tetrahydrofolate metabolic process	2.42E-03
75	GO:0034059: response to anoxia	2.42E-03
76	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.42E-03
77	GO:0009226: nucleotide-sugar biosynthetic process	2.42E-03
78	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.42E-03
79	GO:0010731: protein glutathionylation	2.42E-03
80	GO:0006636: unsaturated fatty acid biosynthetic process	2.52E-03
81	GO:0009637: response to blue light	2.80E-03
82	GO:0006808: regulation of nitrogen utilization	3.26E-03
83	GO:0019464: glycine decarboxylation via glycine cleavage system	3.26E-03
84	GO:0015994: chlorophyll metabolic process	3.26E-03
85	GO:0030104: water homeostasis	3.26E-03
86	GO:0010117: photoprotection	4.18E-03
87	GO:0006461: protein complex assembly	4.18E-03
88	GO:0034052: positive regulation of plant-type hypersensitive response	4.18E-03
89	GO:0042335: cuticle development	5.18E-03
90	GO:0000741: karyogamy	5.18E-03
91	GO:0000413: protein peptidyl-prolyl isomerization	5.18E-03
92	GO:0042631: cellular response to water deprivation	5.18E-03
93	GO:0060918: auxin transport	5.18E-03
94	GO:1902456: regulation of stomatal opening	5.18E-03
95	GO:0009958: positive gravitropism	5.59E-03
96	GO:2000033: regulation of seed dormancy process	6.24E-03
97	GO:0019509: L-methionine salvage from methylthioadenosine	6.24E-03
98	GO:0005975: carbohydrate metabolic process	6.84E-03
99	GO:0000302: response to reactive oxygen species	6.91E-03
100	GO:0009772: photosynthetic electron transport in photosystem II	7.39E-03
101	GO:0048437: floral organ development	7.39E-03
102	GO:0055085: transmembrane transport	8.10E-03
103	GO:0009658: chloroplast organization	8.11E-03
104	GO:0009850: auxin metabolic process	8.60E-03
105	GO:0043068: positive regulation of programmed cell death	8.60E-03
106	GO:0032508: DNA duplex unwinding	8.60E-03
107	GO:0048564: photosystem I assembly	8.60E-03
108	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	8.60E-03
109	GO:0009819: drought recovery	8.60E-03
110	GO:0071482: cellular response to light stimulus	9.88E-03
111	GO:0010233: phloem transport	9.88E-03
112	GO:0000373: Group II intron splicing	1.12E-02
113	GO:0042128: nitrate assimilation	1.12E-02
114	GO:0009051: pentose-phosphate shunt, oxidative branch	1.12E-02
115	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.12E-02
116	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.18E-02
117	GO:0042744: hydrogen peroxide catabolic process	1.40E-02
118	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.41E-02
119	GO:0048829: root cap development	1.41E-02
120	GO:0006949: syncytium formation	1.41E-02
121	GO:0045454: cell redox homeostasis	1.48E-02
122	GO:0009631: cold acclimation	1.52E-02
123	GO:0010119: regulation of stomatal movement	1.52E-02
124	GO:0006879: cellular iron ion homeostasis	1.56E-02
125	GO:0006352: DNA-templated transcription, initiation	1.56E-02
126	GO:0000272: polysaccharide catabolic process	1.56E-02
127	GO:0018119: peptidyl-cysteine S-nitrosylation	1.56E-02
128	GO:0048229: gametophyte development	1.56E-02
129	GO:0010015: root morphogenesis	1.56E-02
130	GO:0019684: photosynthesis, light reaction	1.56E-02
131	GO:0009698: phenylpropanoid metabolic process	1.56E-02
132	GO:0009089: lysine biosynthetic process via diaminopimelate	1.56E-02
133	GO:0043085: positive regulation of catalytic activity	1.56E-02
134	GO:0006633: fatty acid biosynthetic process	1.59E-02
135	GO:0016024: CDP-diacylglycerol biosynthetic process	1.72E-02
136	GO:0008361: regulation of cell size	1.72E-02
137	GO:0034599: cellular response to oxidative stress	1.75E-02
138	GO:0045490: pectin catabolic process	1.79E-02
139	GO:0007623: circadian rhythm	1.79E-02
140	GO:0006006: glucose metabolic process	1.88E-02
141	GO:0009718: anthocyanin-containing compound biosynthetic process	1.88E-02
142	GO:0010075: regulation of meristem growth	1.88E-02
143	GO:0009767: photosynthetic electron transport chain	1.88E-02
144	GO:0016042: lipid catabolic process	1.94E-02
145	GO:0010540: basipetal auxin transport	2.05E-02
146	GO:0009934: regulation of meristem structural organization	2.05E-02
147	GO:0006397: mRNA processing	2.15E-02
148	GO:0010030: positive regulation of seed germination	2.23E-02
149	GO:0009644: response to high light intensity	2.33E-02
150	GO:0006855: drug transmembrane transport	2.52E-02
151	GO:0010187: negative regulation of seed germination	2.59E-02
152	GO:2000377: regulation of reactive oxygen species metabolic process	2.59E-02
153	GO:0005992: trehalose biosynthetic process	2.59E-02
154	GO:0009863: salicylic acid mediated signaling pathway	2.59E-02
155	GO:0009664: plant-type cell wall organization	2.71E-02
156	GO:0042538: hyperosmotic salinity response	2.71E-02
157	GO:0007017: microtubule-based process	2.78E-02
158	GO:0006364: rRNA processing	2.91E-02
159	GO:0009585: red, far-red light phototransduction	2.91E-02
160	GO:0003333: amino acid transmembrane transport	2.97E-02
161	GO:0048511: rhythmic process	2.97E-02
162	GO:0061077: chaperone-mediated protein folding	2.97E-02
163	GO:0010017: red or far-red light signaling pathway	3.17E-02
164	GO:0009814: defense response, incompatible interaction	3.17E-02
165	GO:0006417: regulation of translation	3.22E-02
166	GO:0009734: auxin-activated signaling pathway	3.35E-02
167	GO:0006012: galactose metabolic process	3.37E-02
168	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.37E-02
169	GO:0009306: protein secretion	3.58E-02
170	GO:0048443: stamen development	3.58E-02
171	GO:0009723: response to ethylene	3.71E-02
172	GO:0055114: oxidation-reduction process	3.78E-02
173	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.79E-02
174	GO:0080022: primary root development	4.01E-02
175	GO:0048653: anther development	4.01E-02
176	GO:0080167: response to karrikin	4.04E-02
177	GO:0009624: response to nematode	4.13E-02
178	GO:0010197: polar nucleus fusion	4.23E-02
179	GO:0006396: RNA processing	4.25E-02
180	GO:0042752: regulation of circadian rhythm	4.45E-02
181	GO:0019252: starch biosynthetic process	4.68E-02
182	GO:0002229: defense response to oomycetes	4.91E-02
183	GO:0010193: response to ozone	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
3	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
4	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
8	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
9	GO:0046570: methylthioribulose 1-phosphate dehydratase activity	0.00E+00
10	GO:0043874: acireductone synthase activity	0.00E+00
11	GO:0005528: FK506 binding	5.14E-07
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.54E-07
13	GO:0019843: rRNA binding	9.97E-06
14	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	9.99E-06
15	GO:0016851: magnesium chelatase activity	7.31E-05
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.27E-04
17	GO:0008266: poly(U) RNA binding	1.80E-04
18	GO:0015250: water channel activity	1.97E-04
19	GO:0016168: chlorophyll binding	2.17E-04
20	GO:0031409: pigment binding	2.48E-04
21	GO:0004130: cytochrome-c peroxidase activity	2.78E-04
22	GO:0051920: peroxiredoxin activity	3.72E-04
23	GO:0004017: adenylate kinase activity	3.72E-04
24	GO:0045485: omega-6 fatty acid desaturase activity	4.76E-04
25	GO:0046906: tetrapyrrole binding	4.76E-04
26	GO:0004856: xylulokinase activity	4.76E-04
27	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	4.76E-04
28	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	4.76E-04
29	GO:0016209: antioxidant activity	5.96E-04
30	GO:0051537: 2 iron, 2 sulfur cluster binding	7.56E-04
31	GO:0008967: phosphoglycolate phosphatase activity	1.02E-03
32	GO:0047746: chlorophyllase activity	1.02E-03
33	GO:0042389: omega-3 fatty acid desaturase activity	1.02E-03
34	GO:0016868: intramolecular transferase activity, phosphotransferases	1.02E-03
35	GO:0010297: heteropolysaccharide binding	1.02E-03
36	GO:0004047: aminomethyltransferase activity	1.02E-03
37	GO:0005381: iron ion transmembrane transporter activity	1.02E-03
38	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.02E-03
39	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.02E-03
40	GO:0004075: biotin carboxylase activity	1.67E-03
41	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.67E-03
42	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.67E-03
43	GO:0008864: formyltetrahydrofolate deformylase activity	1.67E-03
44	GO:0004324: ferredoxin-NADP+ reductase activity	1.67E-03
45	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.67E-03
46	GO:0050734: hydroxycinnamoyltransferase activity	1.67E-03
47	GO:0004089: carbonate dehydratase activity	1.79E-03
48	GO:0016788: hydrolase activity, acting on ester bonds	2.09E-03
49	GO:0017089: glycolipid transporter activity	2.42E-03
50	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.42E-03
51	GO:0019201: nucleotide kinase activity	2.42E-03
52	GO:0046556: alpha-L-arabinofuranosidase activity	3.26E-03
53	GO:0001053: plastid sigma factor activity	3.26E-03
54	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.26E-03
55	GO:0051861: glycolipid binding	3.26E-03
56	GO:0004045: aminoacyl-tRNA hydrolase activity	3.26E-03
57	GO:0016987: sigma factor activity	3.26E-03
58	GO:0010328: auxin influx transmembrane transporter activity	3.26E-03
59	GO:1990137: plant seed peroxidase activity	3.26E-03
60	GO:0009044: xylan 1,4-beta-xylosidase activity	3.26E-03
61	GO:0030570: pectate lyase activity	4.06E-03
62	GO:0016773: phosphotransferase activity, alcohol group as acceptor	4.18E-03
63	GO:0003989: acetyl-CoA carboxylase activity	4.18E-03
64	GO:0003959: NADPH dehydrogenase activity	4.18E-03
65	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	5.18E-03
66	GO:0042578: phosphoric ester hydrolase activity	5.18E-03
67	GO:0016688: L-ascorbate peroxidase activity	5.18E-03
68	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	5.18E-03
69	GO:0050662: coenzyme binding	6.01E-03
70	GO:0004602: glutathione peroxidase activity	6.24E-03
71	GO:0004559: alpha-mannosidase activity	6.24E-03
72	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.24E-03
73	GO:0048038: quinone binding	6.91E-03
74	GO:0019899: enzyme binding	7.39E-03
75	GO:0004601: peroxidase activity	8.11E-03
76	GO:0004564: beta-fructofuranosidase activity	8.60E-03
77	GO:0004034: aldose 1-epimerase activity	8.60E-03
78	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	9.88E-03
79	GO:0000989: transcription factor activity, transcription factor binding	1.12E-02
80	GO:0008236: serine-type peptidase activity	1.25E-02
81	GO:0004575: sucrose alpha-glucosidase activity	1.26E-02
82	GO:0003735: structural constituent of ribosome	1.28E-02
83	GO:0052689: carboxylic ester hydrolase activity	1.31E-02
84	GO:0016829: lyase activity	1.31E-02
85	GO:0005096: GTPase activator activity	1.38E-02
86	GO:0004805: trehalose-phosphatase activity	1.41E-02
87	GO:0016787: hydrolase activity	1.52E-02
88	GO:0047372: acylglycerol lipase activity	1.56E-02
89	GO:0005509: calcium ion binding	1.71E-02
90	GO:0008378: galactosyltransferase activity	1.72E-02
91	GO:0010329: auxin efflux transmembrane transporter activity	1.88E-02
92	GO:0031072: heat shock protein binding	1.88E-02
93	GO:0004565: beta-galactosidase activity	1.88E-02
94	GO:0004364: glutathione transferase activity	2.07E-02
95	GO:0004185: serine-type carboxypeptidase activity	2.16E-02
96	GO:0008146: sulfotransferase activity	2.23E-02
97	GO:0005215: transporter activity	2.41E-02
98	GO:0015293: symporter activity	2.42E-02
99	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.42E-02
100	GO:0004176: ATP-dependent peptidase activity	2.97E-02
101	GO:0033612: receptor serine/threonine kinase binding	2.97E-02
102	GO:0016491: oxidoreductase activity	3.33E-02
103	GO:0022891: substrate-specific transmembrane transporter activity	3.37E-02
104	GO:0003727: single-stranded RNA binding	3.58E-02
105	GO:0003756: protein disulfide isomerase activity	3.58E-02
106	GO:0004650: polygalacturonase activity	3.77E-02
107	GO:0016853: isomerase activity	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	2.79E-52
4	GO:0009535: chloroplast thylakoid membrane	1.09E-50
5	GO:0009534: chloroplast thylakoid	3.19E-47
6	GO:0009941: chloroplast envelope	9.64E-32
7	GO:0009570: chloroplast stroma	9.11E-30
8	GO:0009543: chloroplast thylakoid lumen	7.78E-24
9	GO:0009579: thylakoid	2.27E-19
10	GO:0030095: chloroplast photosystem II	4.90E-13
11	GO:0031977: thylakoid lumen	6.81E-13
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.23E-10
13	GO:0010287: plastoglobule	4.26E-08
14	GO:0009523: photosystem II	1.92E-07
15	GO:0009533: chloroplast stromal thylakoid	2.22E-07
16	GO:0009654: photosystem II oxygen evolving complex	6.84E-07
17	GO:0048046: apoplast	1.88E-06
18	GO:0019898: extrinsic component of membrane	5.21E-06
19	GO:0010007: magnesium chelatase complex	3.40E-05
20	GO:0009505: plant-type cell wall	4.47E-05
21	GO:0009706: chloroplast inner membrane	4.98E-05
22	GO:0016020: membrane	1.53E-04
23	GO:0010319: stromule	1.61E-04
24	GO:0042651: thylakoid membrane	3.28E-04
25	GO:0009515: granal stacked thylakoid	4.76E-04
26	GO:0009344: nitrite reductase complex [NAD(P)H]	4.76E-04
27	GO:0043674: columella	4.76E-04
28	GO:0009783: photosystem II antenna complex	4.76E-04
29	GO:0009538: photosystem I reaction center	5.96E-04
30	GO:0009522: photosystem I	7.77E-04
31	GO:0042170: plastid membrane	1.02E-03
32	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.02E-03
33	GO:0030529: intracellular ribonucleoprotein complex	1.47E-03
34	GO:0005618: cell wall	2.42E-03
35	GO:0009531: secondary cell wall	2.42E-03
36	GO:0005775: vacuolar lumen	2.42E-03
37	GO:0005960: glycine cleavage complex	2.42E-03
38	GO:0005840: ribosome	2.85E-03
39	GO:0031969: chloroplast membrane	2.95E-03
40	GO:0005773: vacuole	5.92E-03
41	GO:0042807: central vacuole	7.39E-03
42	GO:0005811: lipid particle	9.88E-03
43	GO:0042644: chloroplast nucleoid	1.12E-02
44	GO:0045298: tubulin complex	1.12E-02
45	GO:0008180: COP9 signalosome	1.12E-02
46	GO:0000311: plastid large ribosomal subunit	1.72E-02
47	GO:0032040: small-subunit processome	1.72E-02
48	GO:0009508: plastid chromosome	1.88E-02
49	GO:0030076: light-harvesting complex	2.23E-02
50	GO:0005887: integral component of plasma membrane	3.18E-02
51	GO:0005874: microtubule	3.87E-02
52	GO:0016021: integral component of membrane	4.01E-02