co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043462: regulation of ATPase activity	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0006482: protein demethylation	0.00E+00
4	GO:0046292: formaldehyde metabolic process	0.00E+00
5	GO:0048227: plasma membrane to endosome transport	0.00E+00
6	GO:0006069: ethanol oxidation	0.00E+00
7	GO:0046686: response to cadmium ion	2.53E-06
8	GO:0006099: tricarboxylic acid cycle	2.59E-05
9	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.48E-05
10	GO:0006102: isocitrate metabolic process	1.08E-04
11	GO:0035266: meristem growth	1.52E-04
12	GO:0098710: guanine import across plasma membrane	1.52E-04
13	GO:0007292: female gamete generation	1.52E-04
14	GO:0006805: xenobiotic metabolic process	1.52E-04
15	GO:1990641: response to iron ion starvation	1.52E-04
16	GO:0080173: male-female gamete recognition during double fertilization	1.52E-04
17	GO:0035344: hypoxanthine transport	1.52E-04
18	GO:0010265: SCF complex assembly	1.52E-04
19	GO:0098721: uracil import across plasma membrane	1.52E-04
20	GO:0098702: adenine import across plasma membrane	1.52E-04
21	GO:0006098: pentose-phosphate shunt	1.66E-04
22	GO:0006888: ER to Golgi vesicle-mediated transport	2.20E-04
23	GO:0006511: ubiquitin-dependent protein catabolic process	3.31E-04
24	GO:0019521: D-gluconate metabolic process	3.47E-04
25	GO:0019374: galactolipid metabolic process	3.47E-04
26	GO:0007051: spindle organization	3.47E-04
27	GO:0051788: response to misfolded protein	3.47E-04
28	GO:0006101: citrate metabolic process	3.47E-04
29	GO:1902000: homogentisate catabolic process	3.47E-04
30	GO:0097054: L-glutamate biosynthetic process	3.47E-04
31	GO:0031648: protein destabilization	3.47E-04
32	GO:0009072: aromatic amino acid family metabolic process	5.68E-04
33	GO:0060968: regulation of gene silencing	5.68E-04
34	GO:1900055: regulation of leaf senescence	5.68E-04
35	GO:0010498: proteasomal protein catabolic process	5.68E-04
36	GO:0010359: regulation of anion channel activity	5.68E-04
37	GO:0051603: proteolysis involved in cellular protein catabolic process	7.31E-04
38	GO:0030433: ubiquitin-dependent ERAD pathway	7.43E-04
39	GO:0006624: vacuolar protein processing	8.13E-04
40	GO:0006537: glutamate biosynthetic process	8.13E-04
41	GO:0010255: glucose mediated signaling pathway	8.13E-04
42	GO:0042823: pyridoxal phosphate biosynthetic process	8.13E-04
43	GO:0001676: long-chain fatty acid metabolic process	8.13E-04
44	GO:0019676: ammonia assimilation cycle	1.08E-03
45	GO:0010363: regulation of plant-type hypersensitive response	1.08E-03
46	GO:0006542: glutamine biosynthetic process	1.08E-03
47	GO:0006097: glyoxylate cycle	1.36E-03
48	GO:0006405: RNA export from nucleus	1.36E-03
49	GO:0046283: anthocyanin-containing compound metabolic process	1.36E-03
50	GO:0006751: glutathione catabolic process	1.67E-03
51	GO:0048827: phyllome development	1.67E-03
52	GO:0048232: male gamete generation	1.67E-03
53	GO:0043248: proteasome assembly	1.67E-03
54	GO:1902456: regulation of stomatal opening	1.67E-03
55	GO:0035435: phosphate ion transmembrane transport	1.67E-03
56	GO:0000060: protein import into nucleus, translocation	1.67E-03
57	GO:0006574: valine catabolic process	1.67E-03
58	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	1.67E-03
59	GO:0048280: vesicle fusion with Golgi apparatus	2.01E-03
60	GO:0010189: vitamin E biosynthetic process	2.01E-03
61	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	2.36E-03
62	GO:0019745: pentacyclic triterpenoid biosynthetic process	2.36E-03
63	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	2.36E-03
64	GO:0042773: ATP synthesis coupled electron transport	2.36E-03
65	GO:0000082: G1/S transition of mitotic cell cycle	2.36E-03
66	GO:0006644: phospholipid metabolic process	2.73E-03
67	GO:0009061: anaerobic respiration	2.73E-03
68	GO:0010078: maintenance of root meristem identity	2.73E-03
69	GO:0010043: response to zinc ion	2.88E-03
70	GO:0009853: photorespiration	3.15E-03
71	GO:0000373: Group II intron splicing	3.53E-03
72	GO:0043067: regulation of programmed cell death	3.96E-03
73	GO:0006896: Golgi to vacuole transport	4.40E-03
74	GO:0048829: root cap development	4.40E-03
75	GO:0006855: drug transmembrane transport	4.72E-03
76	GO:0010015: root morphogenesis	4.86E-03
77	GO:0006790: sulfur compound metabolic process	5.34E-03
78	GO:0009809: lignin biosynthetic process	5.45E-03
79	GO:0006457: protein folding	5.69E-03
80	GO:0045454: cell redox homeostasis	6.17E-03
81	GO:0009933: meristem structural organization	6.33E-03
82	GO:0007034: vacuolar transport	6.33E-03
83	GO:0055114: oxidation-reduction process	6.76E-03
84	GO:0090351: seedling development	6.86E-03
85	GO:0046854: phosphatidylinositol phosphorylation	6.86E-03
86	GO:0006071: glycerol metabolic process	7.40E-03
87	GO:0034976: response to endoplasmic reticulum stress	7.40E-03
88	GO:0016042: lipid catabolic process	7.77E-03
89	GO:2000377: regulation of reactive oxygen species metabolic process	7.95E-03
90	GO:0018105: peptidyl-serine phosphorylation	7.99E-03
91	GO:0006629: lipid metabolic process	8.06E-03
92	GO:0009408: response to heat	8.06E-03
93	GO:0009651: response to salt stress	8.07E-03
94	GO:0031348: negative regulation of defense response	9.69E-03
95	GO:0006012: galactose metabolic process	1.03E-02
96	GO:0006979: response to oxidative stress	1.13E-02
97	GO:0042147: retrograde transport, endosome to Golgi	1.16E-02
98	GO:0051028: mRNA transport	1.16E-02
99	GO:0010118: stomatal movement	1.22E-02
100	GO:0034220: ion transmembrane transport	1.22E-02
101	GO:0010087: phloem or xylem histogenesis	1.22E-02
102	GO:0010150: leaf senescence	1.34E-02
103	GO:0042752: regulation of circadian rhythm	1.36E-02
104	GO:0006623: protein targeting to vacuole	1.42E-02
105	GO:0071554: cell wall organization or biogenesis	1.50E-02
106	GO:0010193: response to ozone	1.50E-02
107	GO:0006891: intra-Golgi vesicle-mediated transport	1.50E-02
108	GO:0006635: fatty acid beta-oxidation	1.50E-02
109	GO:0009630: gravitropism	1.57E-02
110	GO:0007264: small GTPase mediated signal transduction	1.57E-02
111	GO:0010583: response to cyclopentenone	1.57E-02
112	GO:0009738: abscisic acid-activated signaling pathway	1.60E-02
113	GO:1901657: glycosyl compound metabolic process	1.64E-02
114	GO:0006464: cellular protein modification process	1.71E-02
115	GO:0010286: heat acclimation	1.79E-02
116	GO:0009911: positive regulation of flower development	1.94E-02
117	GO:0009615: response to virus	1.94E-02
118	GO:0006810: transport	2.00E-02
119	GO:0009816: defense response to bacterium, incompatible interaction	2.02E-02
120	GO:0042128: nitrate assimilation	2.10E-02
121	GO:0048573: photoperiodism, flowering	2.18E-02
122	GO:0007049: cell cycle	2.33E-02
123	GO:0008219: cell death	2.34E-02
124	GO:0010311: lateral root formation	2.43E-02
125	GO:0006499: N-terminal protein myristoylation	2.51E-02
126	GO:0009407: toxin catabolic process	2.51E-02
127	GO:0010119: regulation of stomatal movement	2.60E-02
128	GO:0046777: protein autophosphorylation	2.77E-02
129	GO:0009867: jasmonic acid mediated signaling pathway	2.78E-02
130	GO:0045087: innate immune response	2.78E-02
131	GO:0006839: mitochondrial transport	3.05E-02
132	GO:0006631: fatty acid metabolic process	3.14E-02
133	GO:0006886: intracellular protein transport	3.20E-02
134	GO:0042542: response to hydrogen peroxide	3.23E-02
135	GO:0051707: response to other organism	3.32E-02
136	GO:0009636: response to toxic substance	3.61E-02
137	GO:0009965: leaf morphogenesis	3.61E-02
138	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.81E-02
139	GO:0009846: pollen germination	3.91E-02
140	GO:0042538: hyperosmotic salinity response	3.91E-02
141	GO:0009664: plant-type cell wall organization	3.91E-02
142	GO:0006486: protein glycosylation	4.11E-02
143	GO:0016310: phosphorylation	4.23E-02
144	GO:0048367: shoot system development	4.73E-02
145	GO:0048316: seed development	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
2	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
3	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
4	GO:1990837: sequence-specific double-stranded DNA binding	0.00E+00
5	GO:0004622: lysophospholipase activity	0.00E+00
6	GO:0015930: glutamate synthase activity	0.00E+00
7	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
8	GO:0003846: 2-acylglycerol O-acyltransferase activity	0.00E+00
9	GO:0016508: long-chain-enoyl-CoA hydratase activity	0.00E+00
10	GO:0051723: protein methylesterase activity	0.00E+00
11	GO:0042030: ATPase inhibitor activity	0.00E+00
12	GO:0036402: proteasome-activating ATPase activity	4.48E-05
13	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	6.27E-05
14	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.52E-04
15	GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity	1.52E-04
16	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.52E-04
17	GO:0015208: guanine transmembrane transporter activity	1.52E-04
18	GO:0015294: solute:cation symporter activity	1.52E-04
19	GO:0015207: adenine transmembrane transporter activity	1.52E-04
20	GO:0019707: protein-cysteine S-acyltransferase activity	1.52E-04
21	GO:0016041: glutamate synthase (ferredoxin) activity	1.52E-04
22	GO:0003994: aconitate hydratase activity	3.47E-04
23	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	3.47E-04
24	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.47E-04
25	GO:0019172: glyoxalase III activity	3.47E-04
26	GO:0048531: beta-1,3-galactosyltransferase activity	3.47E-04
27	GO:0015036: disulfide oxidoreductase activity	3.47E-04
28	GO:0004450: isocitrate dehydrogenase (NADP+) activity	3.47E-04
29	GO:0008517: folic acid transporter activity	3.47E-04
30	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.47E-04
31	GO:0017025: TBP-class protein binding	4.57E-04
32	GO:0005093: Rab GDP-dissociation inhibitor activity	5.68E-04
33	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	5.68E-04
34	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	5.68E-04
35	GO:0003840: gamma-glutamyltransferase activity	5.68E-04
36	GO:0036374: glutathione hydrolase activity	5.68E-04
37	GO:0016805: dipeptidase activity	5.68E-04
38	GO:0005524: ATP binding	5.69E-04
39	GO:0016887: ATPase activity	6.76E-04
40	GO:0004298: threonine-type endopeptidase activity	6.79E-04
41	GO:0004300: enoyl-CoA hydratase activity	8.13E-04
42	GO:0008276: protein methyltransferase activity	8.13E-04
43	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	8.13E-04
44	GO:0042299: lupeol synthase activity	8.13E-04
45	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.13E-04
46	GO:0015210: uracil transmembrane transporter activity	1.08E-03
47	GO:0016866: intramolecular transferase activity	1.08E-03
48	GO:0004356: glutamate-ammonia ligase activity	1.36E-03
49	GO:0008177: succinate dehydrogenase (ubiquinone) activity	1.36E-03
50	GO:0000104: succinate dehydrogenase activity	1.36E-03
51	GO:0005496: steroid binding	1.36E-03
52	GO:0031386: protein tag	1.36E-03
53	GO:0051538: 3 iron, 4 sulfur cluster binding	1.36E-03
54	GO:0005507: copper ion binding	1.58E-03
55	GO:0031593: polyubiquitin binding	1.67E-03
56	GO:0047714: galactolipase activity	1.67E-03
57	GO:0009055: electron carrier activity	1.79E-03
58	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.01E-03
59	GO:0102391: decanoate--CoA ligase activity	2.01E-03
60	GO:0003978: UDP-glucose 4-epimerase activity	2.01E-03
61	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.14E-03
62	GO:0004683: calmodulin-dependent protein kinase activity	2.26E-03
63	GO:0004143: diacylglycerol kinase activity	2.36E-03
64	GO:0008235: metalloexopeptidase activity	2.36E-03
65	GO:0008121: ubiquinol-cytochrome-c reductase activity	2.36E-03
66	GO:0004620: phospholipase activity	2.36E-03
67	GO:0004467: long-chain fatty acid-CoA ligase activity	2.36E-03
68	GO:0005096: GTPase activator activity	2.62E-03
69	GO:0052747: sinapyl alcohol dehydrogenase activity	2.73E-03
70	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.12E-03
71	GO:0003951: NAD+ kinase activity	3.12E-03
72	GO:0016787: hydrolase activity	3.35E-03
73	GO:0005215: transporter activity	3.51E-03
74	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.53E-03
75	GO:0051539: 4 iron, 4 sulfur cluster binding	3.59E-03
76	GO:0045309: protein phosphorylated amino acid binding	3.96E-03
77	GO:0047617: acyl-CoA hydrolase activity	3.96E-03
78	GO:0008171: O-methyltransferase activity	4.40E-03
79	GO:0019904: protein domain specific binding	4.86E-03
80	GO:0008794: arsenate reductase (glutaredoxin) activity	4.86E-03
81	GO:0004177: aminopeptidase activity	4.86E-03
82	GO:0008559: xenobiotic-transporting ATPase activity	4.86E-03
83	GO:0051287: NAD binding	4.90E-03
84	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.34E-03
85	GO:0031072: heat shock protein binding	5.83E-03
86	GO:0015114: phosphate ion transmembrane transporter activity	5.83E-03
87	GO:0004022: alcohol dehydrogenase (NAD) activity	5.83E-03
88	GO:0005315: inorganic phosphate transmembrane transporter activity	5.83E-03
89	GO:0008131: primary amine oxidase activity	6.33E-03
90	GO:0051082: unfolded protein binding	7.76E-03
91	GO:0051536: iron-sulfur cluster binding	7.95E-03
92	GO:0003954: NADH dehydrogenase activity	7.95E-03
93	GO:0043424: protein histidine kinase binding	8.51E-03
94	GO:0019706: protein-cysteine S-palmitoyltransferase activity	9.10E-03
95	GO:0003756: protein disulfide isomerase activity	1.09E-02
96	GO:0008536: Ran GTPase binding	1.29E-02
97	GO:0001085: RNA polymerase II transcription factor binding	1.29E-02
98	GO:0005199: structural constituent of cell wall	1.29E-02
99	GO:0004872: receptor activity	1.42E-02
100	GO:0048038: quinone binding	1.50E-02
101	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.50E-02
102	GO:0004197: cysteine-type endopeptidase activity	1.57E-02
103	GO:0016491: oxidoreductase activity	1.70E-02
104	GO:0016413: O-acetyltransferase activity	1.86E-02
105	GO:0008270: zinc ion binding	1.91E-02
106	GO:0015250: water channel activity	1.94E-02
107	GO:0102483: scopolin beta-glucosidase activity	2.18E-02
108	GO:0004806: triglyceride lipase activity	2.18E-02
109	GO:0050660: flavin adenine dinucleotide binding	2.41E-02
110	GO:0015238: drug transmembrane transporter activity	2.43E-02
111	GO:0004222: metalloendopeptidase activity	2.51E-02
112	GO:0008233: peptidase activity	2.54E-02
113	GO:0030145: manganese ion binding	2.60E-02
114	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.60E-02
115	GO:0050897: cobalt ion binding	2.60E-02
116	GO:0005516: calmodulin binding	2.79E-02
117	GO:0008422: beta-glucosidase activity	2.95E-02
118	GO:0000149: SNARE binding	2.95E-02
119	GO:0004364: glutathione transferase activity	3.23E-02
120	GO:0005484: SNAP receptor activity	3.32E-02
121	GO:0051537: 2 iron, 2 sulfur cluster binding	3.52E-02
122	GO:0005509: calcium ion binding	3.65E-02
123	GO:0003924: GTPase activity	3.81E-02
124	GO:0031625: ubiquitin protein ligase binding	4.42E-02
125	GO:0045735: nutrient reservoir activity	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005829: cytosol	2.97E-06
3	GO:0000502: proteasome complex	3.77E-06
4	GO:0030127: COPII vesicle coat	4.48E-05
5	GO:0031597: cytosolic proteasome complex	6.27E-05
6	GO:0005773: vacuole	6.79E-05
7	GO:0031595: nuclear proteasome complex	8.40E-05
8	GO:0009514: glyoxysome	1.36E-04
9	GO:0000138: Golgi trans cisterna	1.52E-04
10	GO:0008540: proteasome regulatory particle, base subcomplex	2.00E-04
11	GO:0005777: peroxisome	2.30E-04
12	GO:0005774: vacuolar membrane	2.60E-04
13	GO:0031314: extrinsic component of mitochondrial inner membrane	3.47E-04
14	GO:0005618: cell wall	3.81E-04
15	GO:0046861: glyoxysomal membrane	5.68E-04
16	GO:0030139: endocytic vesicle	5.68E-04
17	GO:0009530: primary cell wall	5.68E-04
18	GO:0045271: respiratory chain complex I	6.20E-04
19	GO:0005839: proteasome core complex	6.79E-04
20	GO:0031461: cullin-RING ubiquitin ligase complex	8.13E-04
21	GO:0030140: trans-Golgi network transport vesicle	1.67E-03
22	GO:0005886: plasma membrane	1.68E-03
23	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.36E-03
24	GO:0000794: condensed nuclear chromosome	2.36E-03
25	GO:0012507: ER to Golgi transport vesicle membrane	2.73E-03
26	GO:0045273: respiratory chain complex II	2.73E-03
27	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.73E-03
28	GO:0000325: plant-type vacuole	2.88E-03
29	GO:0005794: Golgi apparatus	3.23E-03
30	GO:0009506: plasmodesma	3.41E-03
31	GO:0005819: spindle	3.44E-03
32	GO:0031902: late endosome membrane	3.74E-03
33	GO:0016020: membrane	4.07E-03
34	GO:0005783: endoplasmic reticulum	4.68E-03
35	GO:0031966: mitochondrial membrane	5.08E-03
36	GO:0005635: nuclear envelope	5.84E-03
37	GO:0005737: cytoplasm	6.28E-03
38	GO:0005750: mitochondrial respiratory chain complex III	6.33E-03
39	GO:0005747: mitochondrial respiratory chain complex I	6.65E-03
40	GO:0005730: nucleolus	7.37E-03
41	GO:0005769: early endosome	7.40E-03
42	GO:0009524: phragmoplast	1.03E-02
43	GO:0005770: late endosome	1.29E-02
44	GO:0005788: endoplasmic reticulum lumen	2.02E-02
45	GO:0005667: transcription factor complex	2.10E-02
46	GO:0005789: endoplasmic reticulum membrane	2.12E-02
47	GO:0000151: ubiquitin ligase complex	2.34E-02
48	GO:0005643: nuclear pore	2.34E-02
49	GO:0009570: chloroplast stroma	2.89E-02
50	GO:0031201: SNARE complex	3.14E-02
51	GO:0005743: mitochondrial inner membrane	3.55E-02