co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38225

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
4	GO:0045860: positive regulation of protein kinase activity	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
7	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
8	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
9	GO:0090042: tubulin deacetylation	0.00E+00
10	GO:0000372: Group I intron splicing	0.00E+00
11	GO:0010480: microsporocyte differentiation	0.00E+00
12	GO:0048437: floral organ development	2.30E-04
13	GO:0000481: maturation of 5S rRNA	2.92E-04
14	GO:0043087: regulation of GTPase activity	2.92E-04
15	GO:2000021: regulation of ion homeostasis	2.92E-04
16	GO:0010028: xanthophyll cycle	2.92E-04
17	GO:0034337: RNA folding	2.92E-04
18	GO:0006430: lysyl-tRNA aminoacylation	2.92E-04
19	GO:0000025: maltose catabolic process	2.92E-04
20	GO:0043266: regulation of potassium ion transport	2.92E-04
21	GO:0031338: regulation of vesicle fusion	2.92E-04
22	GO:0000373: Group II intron splicing	4.30E-04
23	GO:0016122: xanthophyll metabolic process	6.40E-04
24	GO:0010289: homogalacturonan biosynthetic process	6.40E-04
25	GO:0010270: photosystem II oxygen evolving complex assembly	6.40E-04
26	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.40E-04
27	GO:0045717: negative regulation of fatty acid biosynthetic process	6.40E-04
28	GO:0048229: gametophyte development	6.86E-04
29	GO:0015995: chlorophyll biosynthetic process	7.31E-04
30	GO:0005983: starch catabolic process	7.84E-04
31	GO:0010075: regulation of meristem growth	8.88E-04
32	GO:0009934: regulation of meristem structural organization	9.97E-04
33	GO:0010020: chloroplast fission	9.97E-04
34	GO:0090630: activation of GTPase activity	1.04E-03
35	GO:2001295: malonyl-CoA biosynthetic process	1.04E-03
36	GO:0006518: peptide metabolic process	1.04E-03
37	GO:0043572: plastid fission	1.48E-03
38	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.48E-03
39	GO:0051639: actin filament network formation	1.48E-03
40	GO:0009226: nucleotide-sugar biosynthetic process	1.48E-03
41	GO:0016556: mRNA modification	1.48E-03
42	GO:0061077: chaperone-mediated protein folding	1.66E-03
43	GO:0010021: amylopectin biosynthetic process	1.99E-03
44	GO:0051781: positive regulation of cell division	1.99E-03
45	GO:0051764: actin crosslink formation	1.99E-03
46	GO:0015994: chlorophyll metabolic process	1.99E-03
47	GO:0015846: polyamine transport	1.99E-03
48	GO:0031122: cytoplasmic microtubule organization	1.99E-03
49	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.99E-03
50	GO:0048653: anther development	2.51E-03
51	GO:0048497: maintenance of floral organ identity	2.54E-03
52	GO:0000304: response to singlet oxygen	2.54E-03
53	GO:0016120: carotene biosynthetic process	2.54E-03
54	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.14E-03
55	GO:0006751: glutathione catabolic process	3.14E-03
56	GO:0042549: photosystem II stabilization	3.14E-03
57	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.14E-03
58	GO:0000470: maturation of LSU-rRNA	3.14E-03
59	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.14E-03
60	GO:0009913: epidermal cell differentiation	3.14E-03
61	GO:0006655: phosphatidylglycerol biosynthetic process	3.14E-03
62	GO:0006828: manganese ion transport	3.14E-03
63	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.14E-03
64	GO:0042026: protein refolding	3.77E-03
65	GO:0006458: 'de novo' protein folding	3.77E-03
66	GO:0009942: longitudinal axis specification	3.77E-03
67	GO:1901657: glycosyl compound metabolic process	3.80E-03
68	GO:0016559: peroxisome fission	5.17E-03
69	GO:0008610: lipid biosynthetic process	5.17E-03
70	GO:0032508: DNA duplex unwinding	5.17E-03
71	GO:0032544: plastid translation	5.92E-03
72	GO:0071482: cellular response to light stimulus	5.92E-03
73	GO:0015996: chlorophyll catabolic process	5.92E-03
74	GO:0009827: plant-type cell wall modification	5.92E-03
75	GO:0009657: plastid organization	5.92E-03
76	GO:0006633: fatty acid biosynthetic process	6.24E-03
77	GO:0009817: defense response to fungus, incompatible interaction	6.29E-03
78	GO:0046685: response to arsenic-containing substance	6.71E-03
79	GO:0010206: photosystem II repair	6.71E-03
80	GO:0048507: meristem development	6.71E-03
81	GO:0007623: circadian rhythm	7.04E-03
82	GO:0006779: porphyrin-containing compound biosynthetic process	7.54E-03
83	GO:1900865: chloroplast RNA modification	7.54E-03
84	GO:0045036: protein targeting to chloroplast	8.40E-03
85	GO:0006782: protoporphyrinogen IX biosynthetic process	8.40E-03
86	GO:0019538: protein metabolic process	8.40E-03
87	GO:0018119: peptidyl-cysteine S-nitrosylation	9.30E-03
88	GO:0046856: phosphatidylinositol dephosphorylation	9.30E-03
89	GO:0006816: calcium ion transport	9.30E-03
90	GO:0006415: translational termination	9.30E-03
91	GO:1903507: negative regulation of nucleic acid-templated transcription	9.30E-03
92	GO:0006810: transport	1.01E-02
93	GO:0012501: programmed cell death	1.02E-02
94	GO:0006820: anion transport	1.02E-02
95	GO:0016024: CDP-diacylglycerol biosynthetic process	1.02E-02
96	GO:0006006: glucose metabolic process	1.12E-02
97	GO:0009718: anthocyanin-containing compound biosynthetic process	1.12E-02
98	GO:0009767: photosynthetic electron transport chain	1.12E-02
99	GO:0030048: actin filament-based movement	1.12E-02
100	GO:0010102: lateral root morphogenesis	1.12E-02
101	GO:0048768: root hair cell tip growth	1.22E-02
102	GO:0009658: chloroplast organization	1.23E-02
103	GO:0071732: cellular response to nitric oxide	1.32E-02
104	GO:0006813: potassium ion transport	1.39E-02
105	GO:0007010: cytoskeleton organization	1.54E-02
106	GO:0051017: actin filament bundle assembly	1.54E-02
107	GO:0008299: isoprenoid biosynthetic process	1.65E-02
108	GO:0016575: histone deacetylation	1.65E-02
109	GO:0006418: tRNA aminoacylation for protein translation	1.65E-02
110	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.69E-02
111	GO:0048316: seed development	1.70E-02
112	GO:0031408: oxylipin biosynthetic process	1.76E-02
113	GO:0046777: protein autophosphorylation	1.76E-02
114	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.88E-02
115	GO:0071369: cellular response to ethylene stimulus	2.00E-02
116	GO:0009686: gibberellin biosynthetic process	2.00E-02
117	GO:0018105: peptidyl-serine phosphorylation	2.05E-02
118	GO:0016117: carotenoid biosynthetic process	2.25E-02
119	GO:0000413: protein peptidyl-prolyl isomerization	2.37E-02
120	GO:0010051: xylem and phloem pattern formation	2.37E-02
121	GO:0010268: brassinosteroid homeostasis	2.50E-02
122	GO:0045489: pectin biosynthetic process	2.50E-02
123	GO:0010305: leaf vascular tissue pattern formation	2.50E-02
124	GO:0006814: sodium ion transport	2.64E-02
125	GO:0019252: starch biosynthetic process	2.77E-02
126	GO:0009791: post-embryonic development	2.77E-02
127	GO:0048825: cotyledon development	2.77E-02
128	GO:0016132: brassinosteroid biosynthetic process	2.91E-02
129	GO:0080156: mitochondrial mRNA modification	2.91E-02
130	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.91E-02
131	GO:0071554: cell wall organization or biogenesis	2.91E-02
132	GO:0009790: embryo development	2.91E-02
133	GO:0005975: carbohydrate metabolic process	3.06E-02
134	GO:0055114: oxidation-reduction process	3.11E-02
135	GO:0030163: protein catabolic process	3.19E-02
136	GO:0071281: cellular response to iron ion	3.19E-02
137	GO:0016125: sterol metabolic process	3.34E-02
138	GO:0071805: potassium ion transmembrane transport	3.48E-02
139	GO:0016126: sterol biosynthetic process	3.78E-02
140	GO:0010027: thylakoid membrane organization	3.78E-02
141	GO:0009739: response to gibberellin	3.84E-02
142	GO:0009816: defense response to bacterium, incompatible interaction	3.93E-02
143	GO:0018298: protein-chromophore linkage	4.57E-02
144	GO:0048481: plant ovule development	4.57E-02
145	GO:0030244: cellulose biosynthetic process	4.57E-02
146	GO:0009834: plant-type secondary cell wall biogenesis	4.89E-02
147	GO:0006811: ion transport	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:1990534: thermospermine oxidase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
6	GO:0051721: protein phosphatase 2A binding	0.00E+00
7	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
8	GO:0042903: tubulin deacetylase activity	0.00E+00
9	GO:0019808: polyamine binding	0.00E+00
10	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
11	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
12	GO:0004676: 3-phosphoinositide-dependent protein kinase activity	0.00E+00
13	GO:0043014: alpha-tubulin binding	0.00E+00
14	GO:0005528: FK506 binding	1.04E-04
15	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.76E-04
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.73E-04
17	GO:0030941: chloroplast targeting sequence binding	2.92E-04
18	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.92E-04
19	GO:0005227: calcium activated cation channel activity	2.92E-04
20	GO:0004824: lysine-tRNA ligase activity	2.92E-04
21	GO:0050308: sugar-phosphatase activity	2.92E-04
22	GO:0051777: ent-kaurenoate oxidase activity	2.92E-04
23	GO:0003867: 4-aminobutyrate transaminase activity	2.92E-04
24	GO:0004856: xylulokinase activity	2.92E-04
25	GO:0004134: 4-alpha-glucanotransferase activity	2.92E-04
26	GO:0008568: microtubule-severing ATPase activity	2.92E-04
27	GO:0019203: carbohydrate phosphatase activity	2.92E-04
28	GO:0034256: chlorophyll(ide) b reductase activity	2.92E-04
29	GO:0004163: diphosphomevalonate decarboxylase activity	2.92E-04
30	GO:0003839: gamma-glutamylcyclotransferase activity	6.40E-04
31	GO:0033201: alpha-1,4-glucan synthase activity	6.40E-04
32	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.40E-04
33	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.40E-04
34	GO:0030267: glyoxylate reductase (NADP) activity	1.04E-03
35	GO:0070402: NADPH binding	1.04E-03
36	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.04E-03
37	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.04E-03
38	GO:0004373: glycogen (starch) synthase activity	1.04E-03
39	GO:0003913: DNA photolyase activity	1.04E-03
40	GO:0004148: dihydrolipoyl dehydrogenase activity	1.04E-03
41	GO:0004075: biotin carboxylase activity	1.04E-03
42	GO:0043023: ribosomal large subunit binding	1.48E-03
43	GO:0008508: bile acid:sodium symporter activity	1.48E-03
44	GO:0019201: nucleotide kinase activity	1.48E-03
45	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.48E-03
46	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.48E-03
47	GO:0048487: beta-tubulin binding	1.48E-03
48	GO:0016149: translation release factor activity, codon specific	1.48E-03
49	GO:0004176: ATP-dependent peptidase activity	1.66E-03
50	GO:0033612: receptor serine/threonine kinase binding	1.66E-03
51	GO:0016836: hydro-lyase activity	1.99E-03
52	GO:0051861: glycolipid binding	1.99E-03
53	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.99E-03
54	GO:0009011: starch synthase activity	1.99E-03
55	GO:0003989: acetyl-CoA carboxylase activity	2.54E-03
56	GO:0008381: mechanically-gated ion channel activity	2.54E-03
57	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.54E-03
58	GO:0017137: Rab GTPase binding	2.54E-03
59	GO:2001070: starch binding	3.14E-03
60	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.14E-03
61	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.14E-03
62	GO:0042578: phosphoric ester hydrolase activity	3.14E-03
63	GO:0051920: peroxiredoxin activity	3.77E-03
64	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.77E-03
65	GO:0015631: tubulin binding	3.77E-03
66	GO:0070300: phosphatidic acid binding	3.77E-03
67	GO:0004017: adenylate kinase activity	3.77E-03
68	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.77E-03
69	GO:0008237: metallopeptidase activity	4.30E-03
70	GO:0009881: photoreceptor activity	4.45E-03
71	GO:0016413: O-acetyltransferase activity	4.55E-03
72	GO:0016209: antioxidant activity	5.17E-03
73	GO:0004033: aldo-keto reductase (NADP) activity	5.17E-03
74	GO:0043022: ribosome binding	5.17E-03
75	GO:0102483: scopolin beta-glucosidase activity	5.68E-03
76	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.92E-03
77	GO:0005096: GTPase activator activity	6.61E-03
78	GO:0003747: translation release factor activity	6.71E-03
79	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.71E-03
80	GO:0004222: metalloendopeptidase activity	6.94E-03
81	GO:0047617: acyl-CoA hydrolase activity	7.54E-03
82	GO:0005384: manganese ion transmembrane transporter activity	7.54E-03
83	GO:0016491: oxidoreductase activity	8.21E-03
84	GO:0008422: beta-glucosidase activity	8.72E-03
85	GO:0005516: calmodulin binding	9.05E-03
86	GO:0044183: protein binding involved in protein folding	9.30E-03
87	GO:0042802: identical protein binding	9.56E-03
88	GO:0008378: galactosyltransferase activity	1.02E-02
89	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.02E-02
90	GO:0015095: magnesium ion transmembrane transporter activity	1.12E-02
91	GO:0043621: protein self-association	1.12E-02
92	GO:0004565: beta-galactosidase activity	1.12E-02
93	GO:0035091: phosphatidylinositol binding	1.12E-02
94	GO:0003774: motor activity	1.22E-02
95	GO:0008131: primary amine oxidase activity	1.22E-02
96	GO:0016788: hydrolase activity, acting on ester bonds	1.26E-02
97	GO:0004190: aspartic-type endopeptidase activity	1.32E-02
98	GO:0004407: histone deacetylase activity	1.54E-02
99	GO:0003714: transcription corepressor activity	1.54E-02
100	GO:0043424: protein histidine kinase binding	1.65E-02
101	GO:0015079: potassium ion transmembrane transporter activity	1.65E-02
102	GO:0008324: cation transmembrane transporter activity	1.65E-02
103	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.76E-02
104	GO:0004707: MAP kinase activity	1.76E-02
105	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.88E-02
106	GO:0003779: actin binding	1.93E-02
107	GO:0004812: aminoacyl-tRNA ligase activity	2.25E-02
108	GO:0016853: isomerase activity	2.64E-02
109	GO:0019901: protein kinase binding	2.77E-02
110	GO:0048038: quinone binding	2.91E-02
111	GO:0051015: actin filament binding	3.19E-02
112	GO:0005524: ATP binding	3.30E-02
113	GO:0008017: microtubule binding	3.59E-02
114	GO:0005515: protein binding	3.69E-02
115	GO:0016301: kinase activity	3.83E-02
116	GO:0005509: calcium ion binding	4.00E-02
117	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.09E-02
118	GO:0004683: calmodulin-dependent protein kinase activity	4.25E-02
119	GO:0004721: phosphoprotein phosphatase activity	4.25E-02
120	GO:0008236: serine-type peptidase activity	4.41E-02
121	GO:0016887: ATPase activity	4.53E-02
122	GO:0015238: drug transmembrane transporter activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0009507: chloroplast	2.28E-31
3	GO:0009941: chloroplast envelope	3.86E-13
4	GO:0009534: chloroplast thylakoid	9.73E-13
5	GO:0009570: chloroplast stroma	1.53E-12
6	GO:0009535: chloroplast thylakoid membrane	2.01E-10
7	GO:0009543: chloroplast thylakoid lumen	4.69E-08
8	GO:0009579: thylakoid	1.03E-04
9	GO:0031977: thylakoid lumen	1.84E-04
10	GO:0009501: amyloplast	2.91E-04
11	GO:0009344: nitrite reductase complex [NAD(P)H]	2.92E-04
12	GO:0031969: chloroplast membrane	8.19E-04
13	GO:0030095: chloroplast photosystem II	9.97E-04
14	GO:0032432: actin filament bundle	1.48E-03
15	GO:0009536: plastid	2.29E-03
16	GO:0010287: plastoglobule	4.36E-03
17	GO:0031359: integral component of chloroplast outer membrane	4.45E-03
18	GO:0009533: chloroplast stromal thylakoid	4.45E-03
19	GO:0009707: chloroplast outer membrane	6.29E-03
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.71E-03
21	GO:0016459: myosin complex	8.40E-03
22	GO:0005884: actin filament	9.30E-03
23	GO:0032040: small-subunit processome	1.02E-02
24	GO:0009508: plastid chromosome	1.12E-02
25	GO:0009574: preprophase band	1.12E-02
26	GO:0030659: cytoplasmic vesicle membrane	1.22E-02
27	GO:0043234: protein complex	1.43E-02
28	GO:0005886: plasma membrane	1.55E-02
29	GO:0009654: photosystem II oxygen evolving complex	1.65E-02
30	GO:0009532: plastid stroma	1.76E-02
31	GO:0009706: chloroplast inner membrane	1.99E-02
32	GO:0019898: extrinsic component of membrane	2.77E-02
33	GO:0009295: nucleoid	3.48E-02
34	GO:0030529: intracellular ribonucleoprotein complex	3.78E-02