co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G37910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
2	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
3	GO:0072321: chaperone-mediated protein transport	0.00E+00
4	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
5	GO:0080056: petal vascular tissue pattern formation	0.00E+00
6	GO:0071731: response to nitric oxide	0.00E+00
7	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
8	GO:0031564: transcription antitermination	0.00E+00
9	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
10	GO:1990258: histone glutamine methylation	0.00E+00
11	GO:0042254: ribosome biogenesis	5.48E-11
12	GO:0006364: rRNA processing	1.16E-09
13	GO:0061077: chaperone-mediated protein folding	2.54E-08
14	GO:0006458: 'de novo' protein folding	3.92E-08
15	GO:0045041: protein import into mitochondrial intermembrane space	1.54E-07
16	GO:0006412: translation	5.55E-07
17	GO:0051131: chaperone-mediated protein complex assembly	1.44E-06
18	GO:0031167: rRNA methylation	4.70E-06
19	GO:0046686: response to cadmium ion	7.53E-06
20	GO:0042026: protein refolding	1.05E-05
21	GO:0001510: RNA methylation	2.48E-05
22	GO:0031120: snRNA pseudouridine synthesis	5.03E-05
23	GO:0031118: rRNA pseudouridine synthesis	5.03E-05
24	GO:0000027: ribosomal large subunit assembly	1.25E-04
25	GO:0007005: mitochondrion organization	1.70E-04
26	GO:1902626: assembly of large subunit precursor of preribosome	2.11E-04
27	GO:0045039: protein import into mitochondrial inner membrane	2.11E-04
28	GO:0008033: tRNA processing	2.41E-04
29	GO:0010501: RNA secondary structure unwinding	2.41E-04
30	GO:0006986: response to unfolded protein	3.09E-04
31	GO:0070301: cellular response to hydrogen peroxide	3.09E-04
32	GO:0051085: chaperone mediated protein folding requiring cofactor	3.09E-04
33	GO:0006241: CTP biosynthetic process	3.09E-04
34	GO:0006165: nucleoside diphosphate phosphorylation	3.09E-04
35	GO:0006228: UTP biosynthetic process	3.09E-04
36	GO:0009651: response to salt stress	4.06E-04
37	GO:0006183: GTP biosynthetic process	4.15E-04
38	GO:0042273: ribosomal large subunit biogenesis	4.15E-04
39	GO:0009396: folic acid-containing compound biosynthetic process	8.97E-04
40	GO:0050821: protein stabilization	1.03E-03
41	GO:0060321: acceptance of pollen	1.17E-03
42	GO:0009408: response to heat	1.23E-03
43	GO:0006189: 'de novo' IMP biosynthetic process	1.32E-03
44	GO:0098656: anion transmembrane transport	1.32E-03
45	GO:0090332: stomatal closure	1.47E-03
46	GO:0035999: tetrahydrofolate interconversion	1.47E-03
47	GO:0010162: seed dormancy process	1.63E-03
48	GO:0006913: nucleocytoplasmic transport	1.79E-03
49	GO:0000266: mitochondrial fission	1.96E-03
50	GO:0006820: anion transport	1.96E-03
51	GO:0006626: protein targeting to mitochondrion	2.14E-03
52	GO:0010588: cotyledon vascular tissue pattern formation	2.14E-03
53	GO:0048467: gynoecium development	2.32E-03
54	GO:0006541: glutamine metabolic process	2.32E-03
55	GO:0006413: translational initiation	2.87E-03
56	GO:0009944: polarity specification of adaxial/abaxial axis	2.88E-03
57	GO:0010187: negative regulation of seed germination	2.88E-03
58	GO:0006457: protein folding	3.51E-03
59	GO:0009294: DNA mediated transformation	3.71E-03
60	GO:0009793: embryo development ending in seed dormancy	4.15E-03
61	GO:0000413: protein peptidyl-prolyl isomerization	4.37E-03
62	GO:0010305: leaf vascular tissue pattern formation	4.60E-03
63	GO:0080156: mitochondrial mRNA modification	5.32E-03
64	GO:0032502: developmental process	5.56E-03
65	GO:0048366: leaf development	5.56E-03
66	GO:0010286: heat acclimation	6.33E-03
67	GO:0009816: defense response to bacterium, incompatible interaction	7.12E-03
68	GO:0016049: cell growth	7.96E-03
69	GO:0009409: response to cold	9.08E-03
70	GO:0048527: lateral root development	9.12E-03
71	GO:0010043: response to zinc ion	9.12E-03
72	GO:0009631: cold acclimation	9.12E-03
73	GO:0009853: photorespiration	9.73E-03
74	GO:0006839: mitochondrial transport	1.07E-02
75	GO:0000154: rRNA modification	1.26E-02
76	GO:0010224: response to UV-B	1.47E-02
77	GO:0048367: shoot system development	1.65E-02
78	GO:0009553: embryo sac development	1.80E-02
79	GO:0009845: seed germination	2.29E-02
80	GO:0006414: translational elongation	2.30E-02
81	GO:0009414: response to water deprivation	3.04E-02
82	GO:0009617: response to bacterium	3.08E-02
83	GO:0010468: regulation of gene expression	3.08E-02
84	GO:0006970: response to osmotic stress	3.91E-02
85	GO:0009723: response to ethylene	4.12E-02
86	GO:0006810: transport	4.56E-02
87	GO:0045892: negative regulation of transcription, DNA-templated	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
2	GO:0003922: GMP synthase (glutamine-hydrolyzing) activity	0.00E+00
3	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
4	GO:0016018: cyclosporin A binding	0.00E+00
5	GO:0030515: snoRNA binding	1.62E-10
6	GO:0003735: structural constituent of ribosome	6.20E-09
7	GO:0051082: unfolded protein binding	1.89E-07
8	GO:0003723: RNA binding	3.61E-07
9	GO:0044183: protein binding involved in protein folding	5.30E-07
10	GO:0008649: rRNA methyltransferase activity	5.94E-07
11	GO:0005507: copper ion binding	8.70E-06
12	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	5.03E-05
13	GO:0003729: mRNA binding	6.41E-05
14	GO:0008026: ATP-dependent helicase activity	1.73E-04
15	GO:0070180: large ribosomal subunit rRNA binding	2.11E-04
16	GO:0004550: nucleoside diphosphate kinase activity	3.09E-04
17	GO:0005524: ATP binding	4.49E-04
18	GO:0004004: ATP-dependent RNA helicase activity	5.46E-04
19	GO:0016462: pyrophosphatase activity	6.44E-04
20	GO:0003746: translation elongation factor activity	7.56E-04
21	GO:0003697: single-stranded DNA binding	7.56E-04
22	GO:0015288: porin activity	1.03E-03
23	GO:0008308: voltage-gated anion channel activity	1.17E-03
24	GO:0003924: GTPase activity	1.23E-03
25	GO:0009982: pseudouridine synthase activity	2.14E-03
26	GO:0015114: phosphate ion transmembrane transporter activity	2.14E-03
27	GO:0000166: nucleotide binding	2.53E-03
28	GO:0004407: histone deacetylase activity	2.88E-03
29	GO:0051087: chaperone binding	3.08E-03
30	GO:0003743: translation initiation factor activity	3.58E-03
31	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.24E-03
32	GO:0050897: cobalt ion binding	9.12E-03
33	GO:0003676: nucleic acid binding	9.92E-03
34	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.30E-02
35	GO:0003690: double-stranded DNA binding	1.47E-02
36	GO:0004386: helicase activity	1.96E-02
37	GO:0008565: protein transporter activity	2.46E-02
38	GO:0005525: GTP binding	2.53E-02
39	GO:0005515: protein binding	3.56E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0005832: chaperonin-containing T-complex	0.00E+00
3	GO:0005730: nucleolus	7.13E-26
4	GO:0032040: small-subunit processome	3.83E-09
5	GO:0005840: ribosome	6.27E-09
6	GO:0031428: box C/D snoRNP complex	2.20E-08
7	GO:0005774: vacuolar membrane	8.49E-08
8	GO:0022625: cytosolic large ribosomal subunit	1.96E-07
9	GO:0005739: mitochondrion	3.92E-06
10	GO:0005829: cytosol	3.11E-05
11	GO:0015030: Cajal body	3.83E-05
12	GO:0022626: cytosolic ribosome	4.10E-05
13	GO:0005618: cell wall	1.16E-04
14	GO:0005747: mitochondrial respiratory chain complex I	1.29E-04
15	GO:0005773: vacuole	2.43E-04
16	GO:0031429: box H/ACA snoRNP complex	3.09E-04
17	GO:0009506: plasmodesma	5.57E-04
18	GO:0030687: preribosome, large subunit precursor	8.97E-04
19	GO:0034399: nuclear periphery	1.03E-03
20	GO:0046930: pore complex	1.17E-03
21	GO:0005680: anaphase-promoting complex	1.32E-03
22	GO:0005759: mitochondrial matrix	2.80E-03
23	GO:0005758: mitochondrial intermembrane space	2.88E-03
24	GO:0005741: mitochondrial outer membrane	3.29E-03
25	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	5.18E-03
26	GO:0016592: mediator complex	5.56E-03
27	GO:0009536: plastid	8.01E-03
28	GO:0005743: mitochondrial inner membrane	8.03E-03
29	GO:0015934: large ribosomal subunit	9.12E-03
30	GO:0005732: small nucleolar ribonucleoprotein complex	1.96E-02
31	GO:0009507: chloroplast	2.06E-02
32	GO:0005737: cytoplasm	2.48E-02
33	GO:0048046: apoplast	3.16E-02
34	GO:0016020: membrane	3.62E-02