co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G37540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0060416: response to growth hormone	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0097164: ammonium ion metabolic process	0.00E+00
5	GO:0032544: plastid translation	3.00E-07
6	GO:0048527: lateral root development	6.47E-05
7	GO:1903409: reactive oxygen species biosynthetic process	6.74E-05
8	GO:0042371: vitamin K biosynthetic process	6.74E-05
9	GO:0048363: mucilage pectin metabolic process	6.74E-05
10	GO:0006438: valyl-tRNA aminoacylation	6.74E-05
11	GO:0070981: L-asparagine biosynthetic process	1.62E-04
12	GO:0071668: plant-type cell wall assembly	1.62E-04
13	GO:0080148: negative regulation of response to water deprivation	1.62E-04
14	GO:0006529: asparagine biosynthetic process	1.62E-04
15	GO:0006954: inflammatory response	2.75E-04
16	GO:0006518: peptide metabolic process	2.75E-04
17	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	2.75E-04
18	GO:0046739: transport of virus in multicellular host	3.98E-04
19	GO:0006168: adenine salvage	3.98E-04
20	GO:0006166: purine ribonucleoside salvage	3.98E-04
21	GO:0009793: embryo development ending in seed dormancy	4.24E-04
22	GO:0071483: cellular response to blue light	5.32E-04
23	GO:0006808: regulation of nitrogen utilization	5.32E-04
24	GO:0006749: glutathione metabolic process	5.32E-04
25	GO:0006412: translation	5.82E-04
26	GO:0006564: L-serine biosynthetic process	6.73E-04
27	GO:0010236: plastoquinone biosynthetic process	6.73E-04
28	GO:0045038: protein import into chloroplast thylakoid membrane	6.73E-04
29	GO:0044209: AMP salvage	6.73E-04
30	GO:0006655: phosphatidylglycerol biosynthetic process	8.23E-04
31	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.23E-04
32	GO:0035435: phosphate ion transmembrane transport	8.23E-04
33	GO:0042372: phylloquinone biosynthetic process	9.79E-04
34	GO:0030488: tRNA methylation	9.79E-04
35	GO:0009772: photosynthetic electron transport in photosystem II	1.14E-03
36	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.14E-03
37	GO:0010078: maintenance of root meristem identity	1.32E-03
38	GO:0009704: de-etiolation	1.32E-03
39	GO:0051707: response to other organism	1.38E-03
40	GO:0043562: cellular response to nitrogen levels	1.50E-03
41	GO:0071482: cellular response to light stimulus	1.50E-03
42	GO:0010497: plasmodesmata-mediated intercellular transport	1.50E-03
43	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.89E-03
44	GO:0006535: cysteine biosynthetic process from serine	2.10E-03
45	GO:0009073: aromatic amino acid family biosynthetic process	2.31E-03
46	GO:0006352: DNA-templated transcription, initiation	2.31E-03
47	GO:0009684: indoleacetic acid biosynthetic process	2.31E-03
48	GO:0006415: translational termination	2.31E-03
49	GO:0016024: CDP-diacylglycerol biosynthetic process	2.53E-03
50	GO:0010588: cotyledon vascular tissue pattern formation	2.76E-03
51	GO:0048467: gynoecium development	2.99E-03
52	GO:0006541: glutamine metabolic process	2.99E-03
53	GO:0090351: seedling development	3.23E-03
54	GO:0009735: response to cytokinin	3.67E-03
55	GO:0019344: cysteine biosynthetic process	3.73E-03
56	GO:0006418: tRNA aminoacylation for protein translation	3.99E-03
57	GO:0016114: terpenoid biosynthetic process	4.26E-03
58	GO:0040008: regulation of growth	4.28E-03
59	GO:0000271: polysaccharide biosynthetic process	5.68E-03
60	GO:0080022: primary root development	5.68E-03
61	GO:0010087: phloem or xylem histogenesis	5.68E-03
62	GO:0009958: positive gravitropism	5.98E-03
63	GO:0045489: pectin biosynthetic process	5.98E-03
64	GO:0009646: response to absence of light	6.28E-03
65	GO:0048825: cotyledon development	6.60E-03
66	GO:0008654: phospholipid biosynthetic process	6.60E-03
67	GO:0009851: auxin biosynthetic process	6.60E-03
68	GO:0010583: response to cyclopentenone	7.24E-03
69	GO:0009567: double fertilization forming a zygote and endosperm	7.90E-03
70	GO:0010027: thylakoid membrane organization	8.93E-03
71	GO:0016126: sterol biosynthetic process	8.93E-03
72	GO:0045454: cell redox homeostasis	1.03E-02
73	GO:0000160: phosphorelay signal transduction system	1.11E-02
74	GO:0009407: toxin catabolic process	1.15E-02
75	GO:0016051: carbohydrate biosynthetic process	1.27E-02
76	GO:0015031: protein transport	1.37E-02
77	GO:0008643: carbohydrate transport	1.61E-02
78	GO:0009636: response to toxic substance	1.65E-02
79	GO:0042538: hyperosmotic salinity response	1.79E-02
80	GO:0009736: cytokinin-activated signaling pathway	1.88E-02
81	GO:0051603: proteolysis involved in cellular protein catabolic process	1.93E-02
82	GO:0006096: glycolytic process	2.12E-02
83	GO:0048367: shoot system development	2.17E-02
84	GO:0009742: brassinosteroid mediated signaling pathway	2.52E-02
85	GO:0055114: oxidation-reduction process	2.62E-02
86	GO:0009845: seed germination	3.00E-02
87	GO:0008380: RNA splicing	4.04E-02
88	GO:0010468: regulation of gene expression	4.04E-02
89	GO:0009658: chloroplast organization	4.86E-02
90	GO:0042254: ribosome biogenesis	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0004832: valine-tRNA ligase activity	6.74E-05
6	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.74E-05
7	GO:0001530: lipopolysaccharide binding	6.74E-05
8	GO:0004071: aspartate-ammonia ligase activity	6.74E-05
9	GO:0008794: arsenate reductase (glutaredoxin) activity	8.50E-05
10	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	1.62E-04
11	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	1.62E-04
12	GO:0004617: phosphoglycerate dehydrogenase activity	1.62E-04
13	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.62E-04
14	GO:0017150: tRNA dihydrouridine synthase activity	2.75E-04
15	GO:0004148: dihydrolipoyl dehydrogenase activity	2.75E-04
16	GO:0003999: adenine phosphoribosyltransferase activity	3.98E-04
17	GO:0016149: translation release factor activity, codon specific	3.98E-04
18	GO:0008097: 5S rRNA binding	3.98E-04
19	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	3.98E-04
20	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	3.98E-04
21	GO:0004659: prenyltransferase activity	5.32E-04
22	GO:0001053: plastid sigma factor activity	5.32E-04
23	GO:0004045: aminoacyl-tRNA hydrolase activity	5.32E-04
24	GO:0016987: sigma factor activity	5.32E-04
25	GO:0016846: carbon-sulfur lyase activity	6.73E-04
26	GO:0004040: amidase activity	6.73E-04
27	GO:0004605: phosphatidate cytidylyltransferase activity	8.23E-04
28	GO:0004124: cysteine synthase activity	9.79E-04
29	GO:0008312: 7S RNA binding	1.32E-03
30	GO:0003735: structural constituent of ribosome	1.39E-03
31	GO:0051537: 2 iron, 2 sulfur cluster binding	1.49E-03
32	GO:0003747: translation release factor activity	1.69E-03
33	GO:0009055: electron carrier activity	2.18E-03
34	GO:0015035: protein disulfide oxidoreductase activity	2.69E-03
35	GO:0015114: phosphate ion transmembrane transporter activity	2.76E-03
36	GO:0051119: sugar transmembrane transporter activity	3.23E-03
37	GO:0019843: rRNA binding	3.25E-03
38	GO:0051536: iron-sulfur cluster binding	3.73E-03
39	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.53E-03
40	GO:0004812: aminoacyl-tRNA ligase activity	5.38E-03
41	GO:0010181: FMN binding	6.28E-03
42	GO:0000156: phosphorelay response regulator activity	7.57E-03
43	GO:0016722: oxidoreductase activity, oxidizing metal ions	8.24E-03
44	GO:0016597: amino acid binding	8.59E-03
45	GO:0004222: metalloendopeptidase activity	1.15E-02
46	GO:0003746: translation elongation factor activity	1.27E-02
47	GO:0004364: glutathione transferase activity	1.48E-02
48	GO:0004185: serine-type carboxypeptidase activity	1.52E-02
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.70E-02
50	GO:0051287: NAD binding	1.74E-02
51	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.88E-02
52	GO:0016758: transferase activity, transferring hexosyl groups	2.78E-02
53	GO:0030170: pyridoxal phosphate binding	3.05E-02
54	GO:0015144: carbohydrate transmembrane transporter activity	3.22E-02
55	GO:0005351: sugar:proton symporter activity	3.51E-02
56	GO:0000287: magnesium ion binding	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	1.63E-15
2	GO:0009507: chloroplast	2.10E-13
3	GO:0009941: chloroplast envelope	1.69E-09
4	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	6.74E-05
5	GO:0009536: plastid	1.04E-04
6	GO:0080085: signal recognition particle, chloroplast targeting	1.62E-04
7	GO:0005640: nuclear outer membrane	2.75E-04
8	GO:0009509: chromoplast	2.75E-04
9	GO:0016363: nuclear matrix	9.79E-04
10	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.50E-03
11	GO:0005840: ribosome	2.24E-03
12	GO:0000312: plastid small ribosomal subunit	2.99E-03
13	GO:0030176: integral component of endoplasmic reticulum membrane	3.23E-03
14	GO:0005615: extracellular space	5.00E-03
15	GO:0005802: trans-Golgi network	7.48E-03
16	GO:0009295: nucleoid	8.24E-03
17	GO:0031969: chloroplast membrane	8.57E-03
18	GO:0005768: endosome	8.80E-03
19	GO:0030529: intracellular ribonucleoprotein complex	8.93E-03
20	GO:0015934: large ribosomal subunit	1.19E-02
21	GO:0000139: Golgi membrane	1.48E-02
22	GO:0005794: Golgi apparatus	2.34E-02
23	GO:0009543: chloroplast thylakoid lumen	2.84E-02
24	GO:0005759: mitochondrial matrix	3.33E-02
25	GO:0031225: anchored component of membrane	3.52E-02
26	GO:0022627: cytosolic small ribosomal subunit	4.35E-02