co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G36640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006069: ethanol oxidation	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0046292: formaldehyde metabolic process	0.00E+00
4	GO:0006090: pyruvate metabolic process	5.68E-06
5	GO:0043069: negative regulation of programmed cell death	5.49E-05
6	GO:0006772: thiamine metabolic process	5.64E-05
7	GO:0035266: meristem growth	5.64E-05
8	GO:0007292: female gamete generation	5.64E-05
9	GO:0006805: xenobiotic metabolic process	5.64E-05
10	GO:0080173: male-female gamete recognition during double fertilization	5.64E-05
11	GO:0010184: cytokinin transport	5.64E-05
12	GO:0055114: oxidation-reduction process	6.25E-05
13	GO:0046686: response to cadmium ion	1.04E-04
14	GO:0090351: seedling development	1.16E-04
15	GO:0051603: proteolysis involved in cellular protein catabolic process	1.25E-04
16	GO:0019441: tryptophan catabolic process to kynurenine	1.37E-04
17	GO:0019521: D-gluconate metabolic process	1.37E-04
18	GO:0051788: response to misfolded protein	1.37E-04
19	GO:0007051: spindle organization	1.37E-04
20	GO:0006101: citrate metabolic process	1.37E-04
21	GO:0060968: regulation of gene silencing	2.34E-04
22	GO:0006624: vacuolar protein processing	3.41E-04
23	GO:0007231: osmosensory signaling pathway	3.41E-04
24	GO:0072334: UDP-galactose transmembrane transport	3.41E-04
25	GO:0010150: leaf senescence	4.05E-04
26	GO:0006878: cellular copper ion homeostasis	4.56E-04
27	GO:0010222: stem vascular tissue pattern formation	4.56E-04
28	GO:1902584: positive regulation of response to water deprivation	4.56E-04
29	GO:0010363: regulation of plant-type hypersensitive response	4.56E-04
30	GO:0033500: carbohydrate homeostasis	4.56E-04
31	GO:0009611: response to wounding	5.23E-04
32	GO:0009615: response to virus	5.36E-04
33	GO:0009651: response to salt stress	5.53E-04
34	GO:0006564: L-serine biosynthetic process	5.78E-04
35	GO:0006097: glyoxylate cycle	5.78E-04
36	GO:0009229: thiamine diphosphate biosynthetic process	5.78E-04
37	GO:0006405: RNA export from nucleus	5.78E-04
38	GO:0030308: negative regulation of cell growth	5.78E-04
39	GO:0045927: positive regulation of growth	5.78E-04
40	GO:0006014: D-ribose metabolic process	7.07E-04
41	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	7.07E-04
42	GO:0006751: glutathione catabolic process	7.07E-04
43	GO:0048827: phyllome development	7.07E-04
44	GO:0048232: male gamete generation	7.07E-04
45	GO:0043248: proteasome assembly	7.07E-04
46	GO:0035435: phosphate ion transmembrane transport	7.07E-04
47	GO:0000060: protein import into nucleus, translocation	7.07E-04
48	GO:0006499: N-terminal protein myristoylation	7.61E-04
49	GO:0010043: response to zinc ion	7.96E-04
50	GO:0009082: branched-chain amino acid biosynthetic process	8.44E-04
51	GO:0098655: cation transmembrane transport	8.44E-04
52	GO:0009099: valine biosynthetic process	8.44E-04
53	GO:0010189: vitamin E biosynthetic process	8.44E-04
54	GO:0034389: lipid particle organization	8.44E-04
55	GO:0050790: regulation of catalytic activity	9.85E-04
56	GO:0080186: developmental vegetative growth	9.85E-04
57	GO:0071669: plant-type cell wall organization or biogenesis	9.85E-04
58	GO:0000082: G1/S transition of mitotic cell cycle	9.85E-04
59	GO:0010078: maintenance of root meristem identity	1.13E-03
60	GO:0006102: isocitrate metabolic process	1.13E-03
61	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.13E-03
62	GO:0009097: isoleucine biosynthetic process	1.29E-03
63	GO:0009051: pentose-phosphate shunt, oxidative branch	1.45E-03
64	GO:0006098: pentose-phosphate shunt	1.45E-03
65	GO:0009821: alkaloid biosynthetic process	1.45E-03
66	GO:0009408: response to heat	1.48E-03
67	GO:0071577: zinc II ion transmembrane transport	1.62E-03
68	GO:0009098: leucine biosynthetic process	1.62E-03
69	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.62E-03
70	GO:0000103: sulfate assimilation	1.79E-03
71	GO:0048829: root cap development	1.79E-03
72	GO:0009299: mRNA transcription	1.79E-03
73	GO:0009620: response to fungus	1.90E-03
74	GO:0006508: proteolysis	1.96E-03
75	GO:0010015: root morphogenesis	1.97E-03
76	GO:0072593: reactive oxygen species metabolic process	1.97E-03
77	GO:0006108: malate metabolic process	2.36E-03
78	GO:0009933: meristem structural organization	2.56E-03
79	GO:0006863: purine nucleobase transport	2.97E-03
80	GO:0006071: glycerol metabolic process	2.97E-03
81	GO:0009695: jasmonic acid biosynthetic process	3.40E-03
82	GO:0051260: protein homooligomerization	3.63E-03
83	GO:0031408: oxylipin biosynthetic process	3.63E-03
84	GO:0030433: ubiquitin-dependent ERAD pathway	3.86E-03
85	GO:0048443: stamen development	4.34E-03
86	GO:0006511: ubiquitin-dependent protein catabolic process	4.49E-03
87	GO:0051028: mRNA transport	4.58E-03
88	GO:0034220: ion transmembrane transport	4.83E-03
89	GO:0006662: glycerol ether metabolic process	5.09E-03
90	GO:0019252: starch biosynthetic process	5.61E-03
91	GO:0006635: fatty acid beta-oxidation	5.88E-03
92	GO:0010193: response to ozone	5.88E-03
93	GO:0010583: response to cyclopentenone	6.15E-03
94	GO:0009723: response to ethylene	6.32E-03
95	GO:0010286: heat acclimation	7.00E-03
96	GO:0006979: response to oxidative stress	7.53E-03
97	GO:0001666: response to hypoxia	7.59E-03
98	GO:0045454: cell redox homeostasis	8.11E-03
99	GO:0008219: cell death	9.13E-03
100	GO:0010311: lateral root formation	9.45E-03
101	GO:0009751: response to salicylic acid	9.87E-03
102	GO:0006629: lipid metabolic process	1.00E-02
103	GO:0009753: response to jasmonic acid	1.07E-02
104	GO:0045087: innate immune response	1.08E-02
105	GO:0034599: cellular response to oxidative stress	1.11E-02
106	GO:0006099: tricarboxylic acid cycle	1.11E-02
107	GO:0042542: response to hydrogen peroxide	1.25E-02
108	GO:0009636: response to toxic substance	1.40E-02
109	GO:0009965: leaf morphogenesis	1.40E-02
110	GO:0006812: cation transport	1.51E-02
111	GO:0009809: lignin biosynthetic process	1.59E-02
112	GO:0048367: shoot system development	1.83E-02
113	GO:0048316: seed development	1.83E-02
114	GO:0009626: plant-type hypersensitive response	1.88E-02
115	GO:0009058: biosynthetic process	2.49E-02
116	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.27E-02
117	GO:0006470: protein dephosphorylation	3.32E-02
118	GO:0010468: regulation of gene expression	3.42E-02
119	GO:0042742: defense response to bacterium	3.61E-02

Rank	GO Term	Adjusted P value
1	GO:0016508: long-chain-enoyl-CoA hydratase activity	0.00E+00
2	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
3	GO:0042030: ATPase inhibitor activity	0.00E+00
4	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
5	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
6	GO:0004622: lysophospholipase activity	0.00E+00
7	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
8	GO:0003846: 2-acylglycerol O-acyltransferase activity	0.00E+00
9	GO:0050242: pyruvate, phosphate dikinase activity	0.00E+00
10	GO:0004788: thiamine diphosphokinase activity	5.64E-05
11	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	5.64E-05
12	GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity	5.64E-05
13	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	5.64E-05
14	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	5.64E-05
15	GO:0004022: alcohol dehydrogenase (NAD) activity	8.84E-05
16	GO:0016629: 12-oxophytodienoate reductase activity	1.37E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	1.37E-04
18	GO:0003994: aconitate hydratase activity	1.37E-04
19	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	1.37E-04
20	GO:0004061: arylformamidase activity	1.37E-04
21	GO:0019172: glyoxalase III activity	1.37E-04
22	GO:0003840: gamma-glutamyltransferase activity	2.34E-04
23	GO:0036374: glutathione hydrolase activity	2.34E-04
24	GO:0016805: dipeptidase activity	2.34E-04
25	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.34E-04
26	GO:0016174: NAD(P)H oxidase activity	2.34E-04
27	GO:0052656: L-isoleucine transaminase activity	3.41E-04
28	GO:0004165: dodecenoyl-CoA delta-isomerase activity	3.41E-04
29	GO:0052654: L-leucine transaminase activity	3.41E-04
30	GO:0004300: enoyl-CoA hydratase activity	3.41E-04
31	GO:0052655: L-valine transaminase activity	3.41E-04
32	GO:0008276: protein methyltransferase activity	3.41E-04
33	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	3.41E-04
34	GO:0004197: cysteine-type endopeptidase activity	3.99E-04
35	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	4.56E-04
36	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	4.56E-04
37	GO:0004084: branched-chain-amino-acid transaminase activity	4.56E-04
38	GO:0004470: malic enzyme activity	4.56E-04
39	GO:0005496: steroid binding	5.78E-04
40	GO:0005459: UDP-galactose transmembrane transporter activity	5.78E-04
41	GO:0008948: oxaloacetate decarboxylase activity	5.78E-04
42	GO:0036402: proteasome-activating ATPase activity	7.07E-04
43	GO:0004656: procollagen-proline 4-dioxygenase activity	8.44E-04
44	GO:0004747: ribokinase activity	8.44E-04
45	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	8.44E-04
46	GO:0008235: metalloexopeptidase activity	9.85E-04
47	GO:0008865: fructokinase activity	1.13E-03
48	GO:0051287: NAD binding	1.32E-03
49	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.45E-03
50	GO:0016844: strictosidine synthase activity	1.62E-03
51	GO:0008234: cysteine-type peptidase activity	1.62E-03
52	GO:0008171: O-methyltransferase activity	1.79E-03
53	GO:0004177: aminopeptidase activity	1.97E-03
54	GO:0008794: arsenate reductase (glutaredoxin) activity	1.97E-03
55	GO:0015035: protein disulfide oxidoreductase activity	2.13E-03
56	GO:0005315: inorganic phosphate transmembrane transporter activity	2.36E-03
57	GO:0008131: primary amine oxidase activity	2.56E-03
58	GO:0004175: endopeptidase activity	2.56E-03
59	GO:0017025: TBP-class protein binding	2.76E-03
60	GO:0031418: L-ascorbic acid binding	3.18E-03
61	GO:0005385: zinc ion transmembrane transporter activity	3.18E-03
62	GO:0008324: cation transmembrane transporter activity	3.40E-03
63	GO:0005345: purine nucleobase transmembrane transporter activity	3.40E-03
64	GO:0004298: threonine-type endopeptidase activity	3.63E-03
65	GO:0047134: protein-disulfide reductase activity	4.58E-03
66	GO:0005507: copper ion binding	4.77E-03
67	GO:0046873: metal ion transmembrane transporter activity	5.09E-03
68	GO:0008536: Ran GTPase binding	5.09E-03
69	GO:0004791: thioredoxin-disulfide reductase activity	5.35E-03
70	GO:0010181: FMN binding	5.35E-03
71	GO:0048038: quinone binding	5.88E-03
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.43E-03
73	GO:0008483: transaminase activity	7.00E-03
74	GO:0016597: amino acid binding	7.29E-03
75	GO:0015250: water channel activity	7.59E-03
76	GO:0005096: GTPase activator activity	9.45E-03
77	GO:0030145: manganese ion binding	1.01E-02
78	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.08E-02
79	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.15E-02
80	GO:0051539: 4 iron, 4 sulfur cluster binding	1.18E-02
81	GO:0016887: ATPase activity	1.55E-02
82	GO:0016298: lipase activity	1.63E-02
83	GO:0051082: unfolded protein binding	2.04E-02
84	GO:0005516: calmodulin binding	2.68E-02
85	GO:0005509: calcium ion binding	3.33E-02
86	GO:0005215: transporter activity	3.98E-02
87	GO:0004601: peroxidase activity	4.12E-02
88	GO:0016788: hydrolase activity, acting on ester bonds	4.17E-02
89	GO:0016491: oxidoreductase activity	4.73E-02
90	GO:0008233: peptidase activity	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005829: cytosol	1.62E-05
3	GO:0005773: vacuole	7.05E-05
4	GO:0005783: endoplasmic reticulum	1.57E-04
5	GO:0000323: lytic vacuole	3.41E-04
6	GO:0005774: vacuolar membrane	5.89E-04
7	GO:0005777: peroxisome	6.23E-04
8	GO:0005618: cell wall	7.71E-04
9	GO:0031597: cytosolic proteasome complex	8.44E-04
10	GO:0030173: integral component of Golgi membrane	8.44E-04
11	GO:0031595: nuclear proteasome complex	9.85E-04
12	GO:0005811: lipid particle	1.29E-03
13	GO:0009514: glyoxysome	1.29E-03
14	GO:0000502: proteasome complex	1.47E-03
15	GO:0008540: proteasome regulatory particle, base subcomplex	1.62E-03
16	GO:0009570: chloroplast stroma	2.07E-03
17	GO:0005764: lysosome	2.56E-03
18	GO:0030176: integral component of endoplasmic reticulum membrane	2.76E-03
19	GO:0005839: proteasome core complex	3.63E-03
20	GO:0005794: Golgi apparatus	5.06E-03
21	GO:0005737: cytoplasm	5.32E-03
22	GO:0009507: chloroplast	8.80E-03
23	GO:0005886: plasma membrane	8.94E-03
24	GO:0005643: nuclear pore	9.13E-03
25	GO:0005887: integral component of plasma membrane	1.36E-02
26	GO:0010008: endosome membrane	1.83E-02
27	GO:0005623: cell	2.45E-02
28	GO:0005759: mitochondrial matrix	2.82E-02
29	GO:0005615: extracellular space	3.27E-02