co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000244: spliceosomal tri-snRNP complex assembly	0.00E+00
2	GO:0048363: mucilage pectin metabolic process	1.57E-05
3	GO:0043631: RNA polyadenylation	4.12E-05
4	GO:0080001: mucilage extrusion from seed coat	1.11E-04
5	GO:0072583: clathrin-dependent endocytosis	1.11E-04
6	GO:0080119: ER body organization	1.11E-04
7	GO:2000114: regulation of establishment of cell polarity	1.11E-04
8	GO:0051259: protein oligomerization	1.11E-04
9	GO:1901000: regulation of response to salt stress	1.11E-04
10	GO:2000306: positive regulation of photomorphogenesis	1.53E-04
11	GO:0006346: methylation-dependent chromatin silencing	1.53E-04
12	GO:0032876: negative regulation of DNA endoreduplication	1.98E-04
13	GO:0016558: protein import into peroxisome matrix	1.98E-04
14	GO:0007029: endoplasmic reticulum organization	1.98E-04
15	GO:0048232: male gamete generation	2.47E-04
16	GO:0048766: root hair initiation	4.04E-04
17	GO:0009827: plant-type cell wall modification	4.60E-04
18	GO:0006378: mRNA polyadenylation	7.00E-04
19	GO:0000266: mitochondrial fission	7.65E-04
20	GO:0008361: regulation of cell size	7.65E-04
21	GO:0007030: Golgi organization	9.64E-04
22	GO:0010091: trichome branching	1.48E-03
23	GO:0070417: cellular response to cold	1.56E-03
24	GO:0006635: fatty acid beta-oxidation	1.99E-03
25	GO:0006464: cellular protein modification process	2.26E-03
26	GO:0010286: heat acclimation	2.36E-03
27	GO:0016579: protein deubiquitination	2.45E-03
28	GO:0010029: regulation of seed germination	2.65E-03
29	GO:0006888: ER to Golgi vesicle-mediated transport	2.84E-03
30	GO:0016049: cell growth	2.94E-03
31	GO:0009908: flower development	3.23E-03
32	GO:0008283: cell proliferation	4.25E-03
33	GO:0000209: protein polyubiquitination	4.37E-03
34	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.84E-03
35	GO:0006414: translational elongation	5.30E-03
36	GO:0048367: shoot system development	5.98E-03
37	GO:0009740: gibberellic acid mediated signaling pathway	6.38E-03
38	GO:0000398: mRNA splicing, via spliceosome	7.34E-03
39	GO:0009845: seed germination	8.21E-03
40	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.05E-02
41	GO:0008380: RNA splicing	1.10E-02
42	GO:0006970: response to osmotic stress	1.39E-02
43	GO:0009723: response to ethylene	1.47E-02
44	GO:0048366: leaf development	1.49E-02
45	GO:0009737: response to abscisic acid	1.54E-02
46	GO:0045454: cell redox homeostasis	1.75E-02
47	GO:0006886: intracellular protein transport	1.79E-02
48	GO:0048364: root development	2.09E-02
49	GO:0009738: abscisic acid-activated signaling pathway	2.99E-02
50	GO:0009416: response to light stimulus	3.06E-02
51	GO:0009611: response to wounding	3.11E-02
52	GO:0051301: cell division	3.25E-02
53	GO:0006457: protein folding	3.68E-02
54	GO:0006511: ubiquitin-dependent protein catabolic process	3.81E-02

Rank	GO Term	Adjusted P value
1	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	0.00E+00
2	GO:0030544: Hsp70 protein binding	1.57E-05
3	GO:0004750: ribulose-phosphate 3-epimerase activity	4.12E-05
4	GO:0004103: choline kinase activity	4.12E-05
5	GO:0004652: polynucleotide adenylyltransferase activity	1.11E-04
6	GO:0005515: protein binding	1.72E-04
7	GO:0003746: translation elongation factor activity	1.77E-04
8	GO:0043130: ubiquitin binding	1.10E-03
9	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.25E-03
10	GO:0016779: nucleotidyltransferase activity	1.33E-03
11	GO:0030276: clathrin binding	1.73E-03
12	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.99E-03
13	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.17E-03
14	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.36E-03
15	GO:0004842: ubiquitin-protein transferase activity	9.94E-03
16	GO:0008017: microtubule binding	1.00E-02
17	GO:0046982: protein heterodimerization activity	1.31E-02
18	GO:0061630: ubiquitin protein ligase activity	1.60E-02
19	GO:0003924: GTPase activity	2.03E-02
20	GO:0000166: nucleotide binding	3.06E-02
21	GO:0004674: protein serine/threonine kinase activity	3.56E-02
22	GO:0005516: calmodulin binding	4.09E-02
23	GO:0005525: GTP binding	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0005690: U4atac snRNP	0.00E+00
2	GO:0032783: ELL-EAF complex	1.57E-05
3	GO:0045334: clathrin-coated endocytic vesicle	1.57E-05
4	GO:0000813: ESCRT I complex	1.98E-04
5	GO:0005687: U4 snRNP	1.98E-04
6	GO:0097526: spliceosomal tri-snRNP complex	1.98E-04
7	GO:0030127: COPII vesicle coat	2.47E-04
8	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.49E-04
9	GO:0046540: U4/U6 x U5 tri-snRNP complex	4.60E-04
10	GO:0071011: precatalytic spliceosome	5.76E-04
11	GO:0015030: Cajal body	5.76E-04
12	GO:0043234: protein complex	1.03E-03
13	GO:0005769: early endosome	1.03E-03
14	GO:0005770: late endosome	1.73E-03
15	GO:0005737: cytoplasm	1.85E-03
16	GO:0009504: cell plate	1.90E-03
17	GO:0005778: peroxisomal membrane	2.36E-03
18	GO:0005834: heterotrimeric G-protein complex	6.11E-03
19	GO:0012505: endomembrane system	6.51E-03
20	GO:0009706: chloroplast inner membrane	6.64E-03
21	GO:0005623: cell	7.91E-03
22	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.41E-02
23	GO:0005874: microtubule	1.50E-02
24	GO:0005773: vacuole	3.83E-02
25	GO:0005622: intracellular	4.61E-02