GO Enrichment Analysis of Co-expressed Genes with
AT4G35440
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0034337: RNA folding | 0.00E+00 |
| 4 | GO:0060416: response to growth hormone | 0.00E+00 |
| 5 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 6 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 7 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 8 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 9 | GO:0006412: translation | 3.92E-14 |
| 10 | GO:0032544: plastid translation | 4.26E-10 |
| 11 | GO:0042254: ribosome biogenesis | 1.83E-08 |
| 12 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.61E-06 |
| 13 | GO:0045038: protein import into chloroplast thylakoid membrane | 6.26E-05 |
| 14 | GO:0006655: phosphatidylglycerol biosynthetic process | 9.17E-05 |
| 15 | GO:0009735: response to cytokinin | 1.10E-04 |
| 16 | GO:0000481: maturation of 5S rRNA | 2.36E-04 |
| 17 | GO:1904964: positive regulation of phytol biosynthetic process | 2.36E-04 |
| 18 | GO:0042371: vitamin K biosynthetic process | 2.36E-04 |
| 19 | GO:1902458: positive regulation of stomatal opening | 2.36E-04 |
| 20 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.36E-04 |
| 21 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.36E-04 |
| 22 | GO:0071482: cellular response to light stimulus | 2.63E-04 |
| 23 | GO:0015995: chlorophyll biosynthetic process | 4.98E-04 |
| 24 | GO:0009793: embryo development ending in seed dormancy | 5.02E-04 |
| 25 | GO:0019684: photosynthesis, light reaction | 5.11E-04 |
| 26 | GO:0006352: DNA-templated transcription, initiation | 5.11E-04 |
| 27 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.24E-04 |
| 28 | GO:0080148: negative regulation of response to water deprivation | 5.24E-04 |
| 29 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 5.24E-04 |
| 30 | GO:0016024: CDP-diacylglycerol biosynthetic process | 5.84E-04 |
| 31 | GO:0015979: photosynthesis | 6.02E-04 |
| 32 | GO:0009767: photosynthetic electron transport chain | 6.63E-04 |
| 33 | GO:0010207: photosystem II assembly | 7.46E-04 |
| 34 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 8.52E-04 |
| 35 | GO:0006954: inflammatory response | 8.52E-04 |
| 36 | GO:0006518: peptide metabolic process | 8.52E-04 |
| 37 | GO:0019344: cysteine biosynthetic process | 1.02E-03 |
| 38 | GO:2001141: regulation of RNA biosynthetic process | 1.21E-03 |
| 39 | GO:0016556: mRNA modification | 1.21E-03 |
| 40 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.21E-03 |
| 41 | GO:0006424: glutamyl-tRNA aminoacylation | 1.21E-03 |
| 42 | GO:0061077: chaperone-mediated protein folding | 1.23E-03 |
| 43 | GO:0009306: protein secretion | 1.59E-03 |
| 44 | GO:0006749: glutathione metabolic process | 1.62E-03 |
| 45 | GO:0071483: cellular response to blue light | 1.62E-03 |
| 46 | GO:0009658: chloroplast organization | 1.67E-03 |
| 47 | GO:0016117: carotenoid biosynthetic process | 1.72E-03 |
| 48 | GO:0000413: protein peptidyl-prolyl isomerization | 1.86E-03 |
| 49 | GO:0032543: mitochondrial translation | 2.07E-03 |
| 50 | GO:0006564: L-serine biosynthetic process | 2.07E-03 |
| 51 | GO:0010236: plastoquinone biosynthetic process | 2.07E-03 |
| 52 | GO:0032973: amino acid export | 2.55E-03 |
| 53 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.55E-03 |
| 54 | GO:0010190: cytochrome b6f complex assembly | 2.55E-03 |
| 55 | GO:0016554: cytidine to uridine editing | 2.55E-03 |
| 56 | GO:0030488: tRNA methylation | 3.06E-03 |
| 57 | GO:0042026: protein refolding | 3.06E-03 |
| 58 | GO:0010019: chloroplast-nucleus signaling pathway | 3.06E-03 |
| 59 | GO:0010555: response to mannitol | 3.06E-03 |
| 60 | GO:1901259: chloroplast rRNA processing | 3.06E-03 |
| 61 | GO:0042372: phylloquinone biosynthetic process | 3.06E-03 |
| 62 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.06E-03 |
| 63 | GO:0006458: 'de novo' protein folding | 3.06E-03 |
| 64 | GO:0010027: thylakoid membrane organization | 3.56E-03 |
| 65 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.61E-03 |
| 66 | GO:0009395: phospholipid catabolic process | 3.61E-03 |
| 67 | GO:0009772: photosynthetic electron transport in photosystem II | 3.61E-03 |
| 68 | GO:0043090: amino acid import | 3.61E-03 |
| 69 | GO:0006457: protein folding | 4.06E-03 |
| 70 | GO:2000070: regulation of response to water deprivation | 4.19E-03 |
| 71 | GO:0009642: response to light intensity | 4.19E-03 |
| 72 | GO:0048564: photosystem I assembly | 4.19E-03 |
| 73 | GO:0006605: protein targeting | 4.19E-03 |
| 74 | GO:0009704: de-etiolation | 4.19E-03 |
| 75 | GO:0032508: DNA duplex unwinding | 4.19E-03 |
| 76 | GO:0017004: cytochrome complex assembly | 4.79E-03 |
| 77 | GO:0009821: alkaloid biosynthetic process | 5.43E-03 |
| 78 | GO:0010206: photosystem II repair | 5.43E-03 |
| 79 | GO:0080144: amino acid homeostasis | 5.43E-03 |
| 80 | GO:1900865: chloroplast RNA modification | 6.09E-03 |
| 81 | GO:0006535: cysteine biosynthetic process from serine | 6.78E-03 |
| 82 | GO:0009773: photosynthetic electron transport in photosystem I | 7.50E-03 |
| 83 | GO:0006415: translational termination | 7.50E-03 |
| 84 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.50E-03 |
| 85 | GO:0009073: aromatic amino acid family biosynthetic process | 7.50E-03 |
| 86 | GO:0045037: protein import into chloroplast stroma | 8.25E-03 |
| 87 | GO:0010628: positive regulation of gene expression | 9.02E-03 |
| 88 | GO:0048768: root hair cell tip growth | 9.82E-03 |
| 89 | GO:0090351: seedling development | 1.06E-02 |
| 90 | GO:0000027: ribosomal large subunit assembly | 1.24E-02 |
| 91 | GO:0016114: terpenoid biosynthetic process | 1.42E-02 |
| 92 | GO:0019915: lipid storage | 1.42E-02 |
| 93 | GO:0016226: iron-sulfur cluster assembly | 1.51E-02 |
| 94 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.80E-02 |
| 95 | GO:0006814: sodium ion transport | 2.12E-02 |
| 96 | GO:0009790: embryo development | 2.14E-02 |
| 97 | GO:0040008: regulation of growth | 2.41E-02 |
| 98 | GO:0009451: RNA modification | 2.59E-02 |
| 99 | GO:0009567: double fertilization forming a zygote and endosperm | 2.68E-02 |
| 100 | GO:0009737: response to abscisic acid | 3.22E-02 |
| 101 | GO:0009817: defense response to fungus, incompatible interaction | 3.67E-02 |
| 102 | GO:0018298: protein-chromophore linkage | 3.67E-02 |
| 103 | GO:0009407: toxin catabolic process | 3.93E-02 |
| 104 | GO:0048527: lateral root development | 4.07E-02 |
| 105 | GO:0009637: response to blue light | 4.34E-02 |
| 106 | GO:0006839: mitochondrial transport | 4.76E-02 |
| 107 | GO:0030001: metal ion transport | 4.76E-02 |
| 108 | GO:0006810: transport | 5.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 2 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 3 | GO:0005048: signal sequence binding | 0.00E+00 |
| 4 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 5 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 6 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 3.75E-21 |
| 8 | GO:0003735: structural constituent of ribosome | 2.66E-16 |
| 9 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.20E-08 |
| 10 | GO:0016851: magnesium chelatase activity | 7.78E-08 |
| 11 | GO:0001053: plastid sigma factor activity | 3.91E-05 |
| 12 | GO:0016987: sigma factor activity | 3.91E-05 |
| 13 | GO:0005528: FK506 binding | 6.57E-05 |
| 14 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.27E-04 |
| 15 | GO:0004033: aldo-keto reductase (NADP) activity | 2.12E-04 |
| 16 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.36E-04 |
| 17 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.36E-04 |
| 18 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 5.24E-04 |
| 19 | GO:0004617: phosphoglycerate dehydrogenase activity | 5.24E-04 |
| 20 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.24E-04 |
| 21 | GO:0030267: glyoxylate reductase (NADP) activity | 8.52E-04 |
| 22 | GO:0004148: dihydrolipoyl dehydrogenase activity | 8.52E-04 |
| 23 | GO:0070402: NADPH binding | 8.52E-04 |
| 24 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 8.52E-04 |
| 25 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 8.52E-04 |
| 26 | GO:0004751: ribose-5-phosphate isomerase activity | 8.52E-04 |
| 27 | GO:0051536: iron-sulfur cluster binding | 1.02E-03 |
| 28 | GO:0043023: ribosomal large subunit binding | 1.21E-03 |
| 29 | GO:0008097: 5S rRNA binding | 1.21E-03 |
| 30 | GO:0008508: bile acid:sodium symporter activity | 1.21E-03 |
| 31 | GO:0016149: translation release factor activity, codon specific | 1.21E-03 |
| 32 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.21E-03 |
| 33 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.62E-03 |
| 34 | GO:0004659: prenyltransferase activity | 1.62E-03 |
| 35 | GO:0043495: protein anchor | 1.62E-03 |
| 36 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.62E-03 |
| 37 | GO:0016788: hydrolase activity, acting on ester bonds | 1.72E-03 |
| 38 | GO:0008374: O-acyltransferase activity | 2.07E-03 |
| 39 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.55E-03 |
| 40 | GO:0080030: methyl indole-3-acetate esterase activity | 2.55E-03 |
| 41 | GO:0004124: cysteine synthase activity | 3.06E-03 |
| 42 | GO:0051920: peroxiredoxin activity | 3.06E-03 |
| 43 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 3.06E-03 |
| 44 | GO:0019899: enzyme binding | 3.61E-03 |
| 45 | GO:0016209: antioxidant activity | 4.19E-03 |
| 46 | GO:0008312: 7S RNA binding | 4.19E-03 |
| 47 | GO:0003723: RNA binding | 4.67E-03 |
| 48 | GO:0004519: endonuclease activity | 4.76E-03 |
| 49 | GO:0004222: metalloendopeptidase activity | 5.11E-03 |
| 50 | GO:0003747: translation release factor activity | 5.43E-03 |
| 51 | GO:0047617: acyl-CoA hydrolase activity | 6.09E-03 |
| 52 | GO:0016844: strictosidine synthase activity | 6.09E-03 |
| 53 | GO:0004864: protein phosphatase inhibitor activity | 6.78E-03 |
| 54 | GO:0044183: protein binding involved in protein folding | 7.50E-03 |
| 55 | GO:0031072: heat shock protein binding | 9.02E-03 |
| 56 | GO:0008266: poly(U) RNA binding | 9.82E-03 |
| 57 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.82E-03 |
| 58 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.02E-02 |
| 59 | GO:0051082: unfolded protein binding | 1.46E-02 |
| 60 | GO:0022891: substrate-specific transmembrane transporter activity | 1.61E-02 |
| 61 | GO:0008080: N-acetyltransferase activity | 2.01E-02 |
| 62 | GO:0010181: FMN binding | 2.12E-02 |
| 63 | GO:0004872: receptor activity | 2.23E-02 |
| 64 | GO:0008237: metallopeptidase activity | 2.80E-02 |
| 65 | GO:0016597: amino acid binding | 2.92E-02 |
| 66 | GO:0016887: ATPase activity | 3.10E-02 |
| 67 | GO:0016168: chlorophyll binding | 3.16E-02 |
| 68 | GO:0008236: serine-type peptidase activity | 3.54E-02 |
| 69 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.67E-02 |
| 70 | GO:0004601: peroxidase activity | 3.90E-02 |
| 71 | GO:0003993: acid phosphatase activity | 4.48E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009571: proplastid stroma | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 1.40E-67 |
| 5 | GO:0009570: chloroplast stroma | 6.23E-42 |
| 6 | GO:0009941: chloroplast envelope | 2.91E-29 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 6.48E-17 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 4.03E-16 |
| 9 | GO:0005840: ribosome | 3.18E-14 |
| 10 | GO:0031977: thylakoid lumen | 2.48E-10 |
| 11 | GO:0009579: thylakoid | 4.38E-09 |
| 12 | GO:0010007: magnesium chelatase complex | 1.60E-08 |
| 13 | GO:0009534: chloroplast thylakoid | 6.03E-07 |
| 14 | GO:0000311: plastid large ribosomal subunit | 2.57E-05 |
| 15 | GO:0030095: chloroplast photosystem II | 3.89E-05 |
| 16 | GO:0000312: plastid small ribosomal subunit | 3.89E-05 |
| 17 | GO:0009536: plastid | 7.62E-05 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 7.67E-05 |
| 19 | GO:0019898: extrinsic component of membrane | 2.24E-04 |
| 20 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.36E-04 |
| 21 | GO:0009547: plastid ribosome | 2.36E-04 |
| 22 | GO:0080085: signal recognition particle, chloroplast targeting | 5.24E-04 |
| 23 | GO:0032040: small-subunit processome | 5.84E-04 |
| 24 | GO:0022626: cytosolic ribosome | 5.91E-04 |
| 25 | GO:0009509: chromoplast | 8.52E-04 |
| 26 | GO:0033281: TAT protein transport complex | 8.52E-04 |
| 27 | GO:0031969: chloroplast membrane | 2.32E-03 |
| 28 | GO:0009295: nucleoid | 3.17E-03 |
| 29 | GO:0009533: chloroplast stromal thylakoid | 3.61E-03 |
| 30 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.79E-03 |
| 31 | GO:0015934: large ribosomal subunit | 5.36E-03 |
| 32 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.43E-03 |
| 33 | GO:0022627: cytosolic small ribosomal subunit | 6.81E-03 |
| 34 | GO:0009508: plastid chromosome | 9.02E-03 |
| 35 | GO:0022625: cytosolic large ribosomal subunit | 1.17E-02 |
| 36 | GO:0042651: thylakoid membrane | 1.32E-02 |
| 37 | GO:0015935: small ribosomal subunit | 1.42E-02 |
| 38 | GO:0009706: chloroplast inner membrane | 1.46E-02 |
| 39 | GO:0016020: membrane | 1.99E-02 |
| 40 | GO:0043231: intracellular membrane-bounded organelle | 2.03E-02 |
| 41 | GO:0009523: photosystem II | 2.23E-02 |
| 42 | GO:0046658: anchored component of plasma membrane | 3.34E-02 |
| 43 | GO:0009707: chloroplast outer membrane | 3.67E-02 |