co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G34730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0000372: Group I intron splicing	0.00E+00
4	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
5	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
6	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
7	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
8	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
9	GO:0090706: specification of plant organ position	0.00E+00
10	GO:0061635: regulation of protein complex stability	0.00E+00
11	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
12	GO:0015994: chlorophyll metabolic process	4.14E-07
13	GO:0016122: xanthophyll metabolic process	4.02E-06
14	GO:0006000: fructose metabolic process	1.44E-05
15	GO:0009773: photosynthetic electron transport in photosystem I	3.45E-05
16	GO:0009767: photosynthetic electron transport chain	5.34E-05
17	GO:0010207: photosystem II assembly	6.46E-05
18	GO:0042549: photosystem II stabilization	1.32E-04
19	GO:0010189: vitamin E biosynthetic process	1.81E-04
20	GO:0015979: photosynthesis	2.27E-04
21	GO:0009644: response to high light intensity	2.51E-04
22	GO:0043953: protein transport by the Tat complex	2.97E-04
23	GO:0010480: microsporocyte differentiation	2.97E-04
24	GO:0000481: maturation of 5S rRNA	2.97E-04
25	GO:0042547: cell wall modification involved in multidimensional cell growth	2.97E-04
26	GO:0065002: intracellular protein transmembrane transport	2.97E-04
27	GO:0043609: regulation of carbon utilization	2.97E-04
28	GO:0010028: xanthophyll cycle	2.97E-04
29	GO:0034337: RNA folding	2.97E-04
30	GO:0010450: inflorescence meristem growth	2.97E-04
31	GO:0019646: aerobic electron transport chain	2.97E-04
32	GO:0000476: maturation of 4.5S rRNA	2.97E-04
33	GO:0000967: rRNA 5'-end processing	2.97E-04
34	GO:0032544: plastid translation	3.66E-04
35	GO:0006002: fructose 6-phosphate metabolic process	3.66E-04
36	GO:0071482: cellular response to light stimulus	3.66E-04
37	GO:0010206: photosystem II repair	4.41E-04
38	GO:0000373: Group II intron splicing	4.41E-04
39	GO:0006096: glycolytic process	4.67E-04
40	GO:0010205: photoinhibition	5.22E-04
41	GO:1900871: chloroplast mRNA modification	6.50E-04
42	GO:0034755: iron ion transmembrane transport	6.50E-04
43	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.50E-04
44	GO:0010270: photosystem II oxygen evolving complex assembly	6.50E-04
45	GO:0034470: ncRNA processing	6.50E-04
46	GO:0009915: phloem sucrose loading	6.50E-04
47	GO:0006094: gluconeogenesis	9.08E-04
48	GO:0019253: reductive pentose-phosphate cycle	1.02E-03
49	GO:0006954: inflammatory response	1.05E-03
50	GO:0045165: cell fate commitment	1.05E-03
51	GO:0000913: preprophase band assembly	1.05E-03
52	GO:0031022: nuclear migration along microfilament	1.05E-03
53	GO:0055114: oxidation-reduction process	1.23E-03
54	GO:0006636: unsaturated fatty acid biosynthetic process	1.27E-03
55	GO:0016556: mRNA modification	1.51E-03
56	GO:0055070: copper ion homeostasis	1.51E-03
57	GO:0033014: tetrapyrrole biosynthetic process	1.51E-03
58	GO:0006418: tRNA aminoacylation for protein translation	1.55E-03
59	GO:0061077: chaperone-mediated protein folding	1.70E-03
60	GO:0010109: regulation of photosynthesis	2.02E-03
61	GO:0045727: positive regulation of translation	2.02E-03
62	GO:0032543: mitochondrial translation	2.58E-03
63	GO:0006564: L-serine biosynthetic process	2.58E-03
64	GO:0009904: chloroplast accumulation movement	2.58E-03
65	GO:0010236: plastoquinone biosynthetic process	2.58E-03
66	GO:0045038: protein import into chloroplast thylakoid membrane	2.58E-03
67	GO:0035434: copper ion transmembrane transport	2.58E-03
68	GO:0007094: mitotic spindle assembly checkpoint	2.58E-03
69	GO:1902183: regulation of shoot apical meristem development	2.58E-03
70	GO:0010158: abaxial cell fate specification	2.58E-03
71	GO:0009409: response to cold	3.00E-03
72	GO:0006828: manganese ion transport	3.19E-03
73	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.19E-03
74	GO:0000741: karyogamy	3.19E-03
75	GO:0006354: DNA-templated transcription, elongation	3.19E-03
76	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.19E-03
77	GO:0000470: maturation of LSU-rRNA	3.19E-03
78	GO:0006810: transport	3.58E-03
79	GO:0016032: viral process	3.65E-03
80	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.84E-03
81	GO:0006458: 'de novo' protein folding	3.84E-03
82	GO:0009903: chloroplast avoidance movement	3.84E-03
83	GO:0009854: oxidative photosynthetic carbon pathway	3.84E-03
84	GO:0042372: phylloquinone biosynthetic process	3.84E-03
85	GO:0042026: protein refolding	3.84E-03
86	GO:0030163: protein catabolic process	3.89E-03
87	GO:0009735: response to cytokinin	3.96E-03
88	GO:0009645: response to low light intensity stimulus	4.53E-03
89	GO:0048437: floral organ development	4.53E-03
90	GO:0010196: nonphotochemical quenching	4.53E-03
91	GO:0010027: thylakoid membrane organization	4.94E-03
92	GO:0009850: auxin metabolic process	5.26E-03
93	GO:0006605: protein targeting	5.26E-03
94	GO:0032508: DNA duplex unwinding	5.26E-03
95	GO:0010492: maintenance of shoot apical meristem identity	5.26E-03
96	GO:0048564: photosystem I assembly	5.26E-03
97	GO:0042128: nitrate assimilation	5.52E-03
98	GO:0010093: specification of floral organ identity	6.03E-03
99	GO:0018298: protein-chromophore linkage	6.45E-03
100	GO:0048507: meristem development	6.83E-03
101	GO:2000024: regulation of leaf development	6.83E-03
102	GO:0006783: heme biosynthetic process	6.83E-03
103	GO:0006098: pentose-phosphate shunt	6.83E-03
104	GO:0009821: alkaloid biosynthetic process	6.83E-03
105	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	7.67E-03
106	GO:0006779: porphyrin-containing compound biosynthetic process	7.67E-03
107	GO:0008152: metabolic process	8.05E-03
108	GO:0009089: lysine biosynthetic process via diaminopimelate	9.46E-03
109	GO:0006879: cellular iron ion homeostasis	9.46E-03
110	GO:0009750: response to fructose	9.46E-03
111	GO:0018119: peptidyl-cysteine S-nitrosylation	9.46E-03
112	GO:0048229: gametophyte development	9.46E-03
113	GO:0006816: calcium ion transport	9.46E-03
114	GO:0019684: photosynthesis, light reaction	9.46E-03
115	GO:0006631: fatty acid metabolic process	9.73E-03
116	GO:0005983: starch catabolic process	1.04E-02
117	GO:0006006: glucose metabolic process	1.14E-02
118	GO:0018107: peptidyl-threonine phosphorylation	1.14E-02
119	GO:0009718: anthocyanin-containing compound biosynthetic process	1.14E-02
120	GO:0010075: regulation of meristem growth	1.14E-02
121	GO:0005986: sucrose biosynthetic process	1.14E-02
122	GO:0009933: meristem structural organization	1.24E-02
123	GO:0009266: response to temperature stimulus	1.24E-02
124	GO:0009934: regulation of meristem structural organization	1.24E-02
125	GO:0048768: root hair cell tip growth	1.24E-02
126	GO:0009658: chloroplast organization	1.27E-02
127	GO:0009944: polarity specification of adaxial/abaxial axis	1.56E-02
128	GO:0009416: response to light stimulus	1.65E-02
129	GO:0009768: photosynthesis, light harvesting in photosystem I	1.68E-02
130	GO:0016575: histone deacetylation	1.68E-02
131	GO:0051321: meiotic cell cycle	1.79E-02
132	GO:0030433: ubiquitin-dependent ERAD pathway	1.91E-02
133	GO:0009814: defense response, incompatible interaction	1.91E-02
134	GO:0016226: iron-sulfur cluster assembly	1.91E-02
135	GO:0071369: cellular response to ethylene stimulus	2.03E-02
136	GO:0009561: megagametogenesis	2.16E-02
137	GO:0000413: protein peptidyl-prolyl isomerization	2.42E-02
138	GO:0048653: anther development	2.42E-02
139	GO:0042631: cellular response to water deprivation	2.42E-02
140	GO:0006457: protein folding	2.43E-02
141	GO:0009793: embryo development ending in seed dormancy	2.53E-02
142	GO:0010154: fruit development	2.55E-02
143	GO:0010197: polar nucleus fusion	2.55E-02
144	GO:0007018: microtubule-based movement	2.68E-02
145	GO:0006814: sodium ion transport	2.68E-02
146	GO:0007059: chromosome segregation	2.68E-02
147	GO:0009646: response to absence of light	2.68E-02
148	GO:0009791: post-embryonic development	2.82E-02
149	GO:0010090: trichome morphogenesis	3.25E-02
150	GO:0009567: double fertilization forming a zygote and endosperm	3.39E-02
151	GO:0007623: circadian rhythm	3.52E-02
152	GO:0009451: RNA modification	3.60E-02
153	GO:0000910: cytokinesis	3.70E-02
154	GO:0001666: response to hypoxia	3.85E-02
155	GO:0016126: sterol biosynthetic process	3.85E-02
156	GO:0015995: chlorophyll biosynthetic process	4.32E-02
157	GO:0016311: dephosphorylation	4.48E-02
158	GO:0048481: plant ovule development	4.65E-02
159	GO:0006499: N-terminal protein myristoylation	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0051721: protein phosphatase 2A binding	0.00E+00
3	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
4	GO:0009976: tocopherol cyclase activity	0.00E+00
5	GO:0042903: tubulin deacetylase activity	0.00E+00
6	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
7	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
11	GO:0043014: alpha-tubulin binding	0.00E+00
12	GO:0004823: leucine-tRNA ligase activity	0.00E+00
13	GO:0008465: glycerate dehydrogenase activity	0.00E+00
14	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
15	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
16	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
17	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
18	GO:0019843: rRNA binding	9.57E-07
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.65E-06
20	GO:0005528: FK506 binding	3.83E-06
21	GO:0002161: aminoacyl-tRNA editing activity	1.44E-05
22	GO:0008266: poly(U) RNA binding	6.46E-05
23	GO:0016787: hydrolase activity	9.02E-05
24	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	2.97E-04
25	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.97E-04
26	GO:0004325: ferrochelatase activity	2.97E-04
27	GO:0045485: omega-6 fatty acid desaturase activity	2.97E-04
28	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.97E-04
29	GO:0009496: plastoquinol--plastocyanin reductase activity	2.97E-04
30	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.50E-04
31	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.50E-04
32	GO:0047746: chlorophyllase activity	6.50E-04
33	GO:0004618: phosphoglycerate kinase activity	6.50E-04
34	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.50E-04
35	GO:0004617: phosphoglycerate dehydrogenase activity	6.50E-04
36	GO:0004047: aminomethyltransferase activity	6.50E-04
37	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.50E-04
38	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.50E-04
39	GO:0031072: heat shock protein binding	9.08E-04
40	GO:0008253: 5'-nucleotidase activity	1.05E-03
41	GO:0004148: dihydrolipoyl dehydrogenase activity	1.05E-03
42	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.05E-03
43	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.05E-03
44	GO:0016531: copper chaperone activity	1.05E-03
45	GO:0019829: cation-transporting ATPase activity	1.05E-03
46	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.05E-03
47	GO:0048487: beta-tubulin binding	1.51E-03
48	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.51E-03
49	GO:0008508: bile acid:sodium symporter activity	1.51E-03
50	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.02E-03
51	GO:0051287: NAD binding	2.02E-03
52	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.02E-03
53	GO:0004506: squalene monooxygenase activity	2.02E-03
54	GO:0004812: aminoacyl-tRNA ligase activity	2.38E-03
55	GO:0008374: O-acyltransferase activity	2.58E-03
56	GO:0042578: phosphoric ester hydrolase activity	3.19E-03
57	GO:2001070: starch binding	3.19E-03
58	GO:0004332: fructose-bisphosphate aldolase activity	3.19E-03
59	GO:0051082: unfolded protein binding	3.62E-03
60	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.84E-03
61	GO:0016168: chlorophyll binding	5.22E-03
62	GO:0004033: aldo-keto reductase (NADP) activity	5.26E-03
63	GO:0005375: copper ion transmembrane transporter activity	6.03E-03
64	GO:0008135: translation factor activity, RNA binding	6.03E-03
65	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	6.03E-03
66	GO:0004222: metalloendopeptidase activity	7.11E-03
67	GO:0005384: manganese ion transmembrane transporter activity	7.67E-03
68	GO:0016844: strictosidine synthase activity	7.67E-03
69	GO:0005381: iron ion transmembrane transporter activity	7.67E-03
70	GO:0008017: microtubule binding	7.70E-03
71	GO:0016491: oxidoreductase activity	8.61E-03
72	GO:0044183: protein binding involved in protein folding	9.46E-03
73	GO:0000049: tRNA binding	1.04E-02
74	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.14E-02
75	GO:0004022: alcohol dehydrogenase (NAD) activity	1.14E-02
76	GO:0015095: magnesium ion transmembrane transporter activity	1.14E-02
77	GO:0051537: 2 iron, 2 sulfur cluster binding	1.14E-02
78	GO:0003723: RNA binding	1.15E-02
79	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.24E-02
80	GO:0031409: pigment binding	1.45E-02
81	GO:0050660: flavin adenine dinucleotide binding	1.53E-02
82	GO:0003954: NADH dehydrogenase activity	1.56E-02
83	GO:0004407: histone deacetylase activity	1.56E-02
84	GO:0003777: microtubule motor activity	1.58E-02
85	GO:0043424: protein histidine kinase binding	1.68E-02
86	GO:0046872: metal ion binding	1.78E-02
87	GO:0004176: ATP-dependent peptidase activity	1.79E-02
88	GO:0033612: receptor serine/threonine kinase binding	1.79E-02
89	GO:0003735: structural constituent of ribosome	1.91E-02
90	GO:0030570: pectate lyase activity	2.03E-02
91	GO:0022891: substrate-specific transmembrane transporter activity	2.03E-02
92	GO:0005524: ATP binding	2.18E-02
93	GO:0050662: coenzyme binding	2.68E-02
94	GO:0016853: isomerase activity	2.68E-02
95	GO:0004519: endonuclease activity	3.02E-02
96	GO:0008237: metallopeptidase activity	3.55E-02
97	GO:0016597: amino acid binding	3.70E-02
98	GO:0003743: translation initiation factor activity	4.10E-02
99	GO:0042802: identical protein binding	4.46E-02
100	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	4.48E-02
101	GO:0008236: serine-type peptidase activity	4.48E-02
102	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.48E-02
103	GO:0016887: ATPase activity	4.67E-02
104	GO:0015238: drug transmembrane transporter activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	2.47E-50
4	GO:0009535: chloroplast thylakoid membrane	3.17E-28
5	GO:0009570: chloroplast stroma	2.03E-26
6	GO:0009941: chloroplast envelope	3.18E-23
7	GO:0009534: chloroplast thylakoid	1.66E-21
8	GO:0009579: thylakoid	1.09E-12
9	GO:0009543: chloroplast thylakoid lumen	3.56E-12
10	GO:0031977: thylakoid lumen	3.01E-08
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.54E-05
12	GO:0010287: plastoglobule	1.23E-04
13	GO:0009533: chloroplast stromal thylakoid	2.36E-04
14	GO:0000428: DNA-directed RNA polymerase complex	2.97E-04
15	GO:0009344: nitrite reductase complex [NAD(P)H]	2.97E-04
16	GO:0009547: plastid ribosome	2.97E-04
17	GO:0031361: integral component of thylakoid membrane	2.97E-04
18	GO:0009782: photosystem I antenna complex	2.97E-04
19	GO:0009706: chloroplast inner membrane	6.22E-04
20	GO:0080085: signal recognition particle, chloroplast targeting	6.50E-04
21	GO:0031304: intrinsic component of mitochondrial inner membrane	6.50E-04
22	GO:0031969: chloroplast membrane	8.55E-04
23	GO:0030095: chloroplast photosystem II	1.02E-03
24	GO:0033281: TAT protein transport complex	1.05E-03
25	GO:0009654: photosystem II oxygen evolving complex	1.55E-03
26	GO:0005828: kinetochore microtubule	2.02E-03
27	GO:0000776: kinetochore	2.58E-03
28	GO:0055035: plastid thylakoid membrane	2.58E-03
29	GO:0009512: cytochrome b6f complex	2.58E-03
30	GO:0009523: photosystem II	3.20E-03
31	GO:0019898: extrinsic component of membrane	3.20E-03
32	GO:0000777: condensed chromosome kinetochore	3.84E-03
33	GO:0048046: apoplast	3.85E-03
34	GO:0010319: stromule	4.40E-03
35	GO:0030529: intracellular ribonucleoprotein complex	4.94E-03
36	GO:0005840: ribosome	5.52E-03
37	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.03E-03
38	GO:0009536: plastid	7.50E-03
39	GO:0005876: spindle microtubule	7.67E-03
40	GO:0043231: intracellular membrane-bounded organelle	8.05E-03
41	GO:0055028: cortical microtubule	8.55E-03
42	GO:0000311: plastid large ribosomal subunit	1.04E-02
43	GO:0032040: small-subunit processome	1.04E-02
44	GO:0000312: plastid small ribosomal subunit	1.24E-02
45	GO:0030076: light-harvesting complex	1.34E-02
46	GO:0005874: microtubule	1.59E-02
47	GO:0009532: plastid stroma	1.79E-02
48	GO:0005871: kinesin complex	2.29E-02
49	GO:0005623: cell	2.62E-02
50	GO:0009522: photosystem I	2.68E-02
51	GO:0009524: phragmoplast	2.69E-02
52	GO:0009504: cell plate	2.82E-02
53	GO:0005694: chromosome	3.10E-02
54	GO:0009295: nucleoid	3.55E-02
55	GO:0046658: anchored component of plasma membrane	4.64E-02