co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G33660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0051503: adenine nucleotide transport	0.00E+00
7	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
8	GO:0015995: chlorophyll biosynthetic process	1.07E-07
9	GO:0032544: plastid translation	1.01E-06
10	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.26E-05
11	GO:0034755: iron ion transmembrane transport	1.26E-05
12	GO:0010158: abaxial cell fate specification	2.38E-04
13	GO:1902183: regulation of shoot apical meristem development	2.38E-04
14	GO:0006655: phosphatidylglycerol biosynthetic process	3.35E-04
15	GO:0010450: inflorescence meristem growth	5.37E-04
16	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	5.37E-04
17	GO:0006824: cobalt ion transport	5.37E-04
18	GO:0043266: regulation of potassium ion transport	5.37E-04
19	GO:0071370: cellular response to gibberellin stimulus	5.37E-04
20	GO:0010480: microsporocyte differentiation	5.37E-04
21	GO:0031338: regulation of vesicle fusion	5.37E-04
22	GO:0006723: cuticle hydrocarbon biosynthetic process	5.37E-04
23	GO:0000481: maturation of 5S rRNA	5.37E-04
24	GO:0042547: cell wall modification involved in multidimensional cell growth	5.37E-04
25	GO:0071461: cellular response to redox state	5.37E-04
26	GO:2000021: regulation of ion homeostasis	5.37E-04
27	GO:0034337: RNA folding	5.37E-04
28	GO:0010206: photosystem II repair	1.04E-03
29	GO:2000024: regulation of leaf development	1.04E-03
30	GO:0010270: photosystem II oxygen evolving complex assembly	1.16E-03
31	GO:0071554: cell wall organization or biogenesis	1.16E-03
32	GO:0080005: photosystem stoichiometry adjustment	1.16E-03
33	GO:0010115: regulation of abscisic acid biosynthetic process	1.16E-03
34	GO:0045717: negative regulation of fatty acid biosynthetic process	1.16E-03
35	GO:0009773: photosynthetic electron transport in photosystem I	1.65E-03
36	GO:0016024: CDP-diacylglycerol biosynthetic process	1.89E-03
37	GO:0043447: alkane biosynthetic process	1.90E-03
38	GO:0006518: peptide metabolic process	1.90E-03
39	GO:0043617: cellular response to sucrose starvation	1.90E-03
40	GO:0045493: xylan catabolic process	1.90E-03
41	GO:0090630: activation of GTPase activity	1.90E-03
42	GO:2001295: malonyl-CoA biosynthetic process	1.90E-03
43	GO:0045165: cell fate commitment	1.90E-03
44	GO:0051639: actin filament network formation	2.75E-03
45	GO:0046902: regulation of mitochondrial membrane permeability	2.75E-03
46	GO:0080170: hydrogen peroxide transmembrane transport	2.75E-03
47	GO:0009226: nucleotide-sugar biosynthetic process	2.75E-03
48	GO:0006424: glutamyl-tRNA aminoacylation	2.75E-03
49	GO:0016556: mRNA modification	2.75E-03
50	GO:2001141: regulation of RNA biosynthetic process	2.75E-03
51	GO:0009944: polarity specification of adaxial/abaxial axis	3.37E-03
52	GO:0051764: actin crosslink formation	3.71E-03
53	GO:0045727: positive regulation of translation	3.71E-03
54	GO:0006810: transport	3.81E-03
55	GO:0061077: chaperone-mediated protein folding	4.09E-03
56	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.36E-03
57	GO:0000304: response to singlet oxygen	4.75E-03
58	GO:0016120: carotene biosynthetic process	4.75E-03
59	GO:0032543: mitochondrial translation	4.75E-03
60	GO:0015979: photosynthesis	5.18E-03
61	GO:0006828: manganese ion transport	5.89E-03
62	GO:0010190: cytochrome b6f complex assembly	5.89E-03
63	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.89E-03
64	GO:0000741: karyogamy	5.89E-03
65	GO:0010405: arabinogalactan protein metabolic process	5.89E-03
66	GO:0006751: glutathione catabolic process	5.89E-03
67	GO:0042549: photosystem II stabilization	5.89E-03
68	GO:0000413: protein peptidyl-prolyl isomerization	6.24E-03
69	GO:0010154: fruit development	6.74E-03
70	GO:0042026: protein refolding	7.11E-03
71	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.11E-03
72	GO:0006458: 'de novo' protein folding	7.11E-03
73	GO:0006629: lipid metabolic process	8.13E-03
74	GO:0009395: phospholipid catabolic process	8.42E-03
75	GO:0048437: floral organ development	8.42E-03
76	GO:0006821: chloride transport	8.42E-03
77	GO:0051510: regulation of unidimensional cell growth	8.42E-03
78	GO:0009753: response to jasmonic acid	9.18E-03
79	GO:0030163: protein catabolic process	9.51E-03
80	GO:0071281: cellular response to iron ion	9.51E-03
81	GO:0048564: photosystem I assembly	9.81E-03
82	GO:0008610: lipid biosynthetic process	9.81E-03
83	GO:0010439: regulation of glucosinolate biosynthetic process	9.81E-03
84	GO:0032508: DNA duplex unwinding	9.81E-03
85	GO:0009932: cell tip growth	1.13E-02
86	GO:0071482: cellular response to light stimulus	1.13E-02
87	GO:0048193: Golgi vesicle transport	1.13E-02
88	GO:0009657: plastid organization	1.13E-02
89	GO:0006526: arginine biosynthetic process	1.13E-02
90	GO:0010093: specification of floral organ identity	1.13E-02
91	GO:0009051: pentose-phosphate shunt, oxidative branch	1.28E-02
92	GO:0009821: alkaloid biosynthetic process	1.28E-02
93	GO:0006098: pentose-phosphate shunt	1.28E-02
94	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.28E-02
95	GO:0048589: developmental growth	1.28E-02
96	GO:0042128: nitrate assimilation	1.35E-02
97	GO:0010205: photoinhibition	1.44E-02
98	GO:0006779: porphyrin-containing compound biosynthetic process	1.44E-02
99	GO:1900865: chloroplast RNA modification	1.44E-02
100	GO:0009817: defense response to fungus, incompatible interaction	1.59E-02
101	GO:0018298: protein-chromophore linkage	1.59E-02
102	GO:0055062: phosphate ion homeostasis	1.61E-02
103	GO:0006782: protoporphyrinogen IX biosynthetic process	1.61E-02
104	GO:0009407: toxin catabolic process	1.75E-02
105	GO:0006816: calcium ion transport	1.79E-02
106	GO:0019684: photosynthesis, light reaction	1.79E-02
107	GO:0009089: lysine biosynthetic process via diaminopimelate	1.79E-02
108	GO:0006415: translational termination	1.79E-02
109	GO:0006879: cellular iron ion homeostasis	1.79E-02
110	GO:0006352: DNA-templated transcription, initiation	1.79E-02
111	GO:0018119: peptidyl-cysteine S-nitrosylation	1.79E-02
112	GO:0048229: gametophyte development	1.79E-02
113	GO:0009735: response to cytokinin	1.88E-02
114	GO:0012501: programmed cell death	1.97E-02
115	GO:0006820: anion transport	1.97E-02
116	GO:0010152: pollen maturation	1.97E-02
117	GO:0006633: fatty acid biosynthetic process	2.01E-02
118	GO:0009767: photosynthetic electron transport chain	2.15E-02
119	GO:0030048: actin filament-based movement	2.15E-02
120	GO:0010102: lateral root morphogenesis	2.15E-02
121	GO:0010628: positive regulation of gene expression	2.15E-02
122	GO:0006006: glucose metabolic process	2.15E-02
123	GO:0009718: anthocyanin-containing compound biosynthetic process	2.15E-02
124	GO:0010075: regulation of meristem growth	2.15E-02
125	GO:0006094: gluconeogenesis	2.15E-02
126	GO:0006839: mitochondrial transport	2.30E-02
127	GO:0048768: root hair cell tip growth	2.35E-02
128	GO:0010143: cutin biosynthetic process	2.35E-02
129	GO:0009933: meristem structural organization	2.35E-02
130	GO:0009934: regulation of meristem structural organization	2.35E-02
131	GO:0005985: sucrose metabolic process	2.55E-02
132	GO:0071732: cellular response to nitric oxide	2.55E-02
133	GO:0090351: seedling development	2.55E-02
134	GO:0010030: positive regulation of seed germination	2.55E-02
135	GO:0010053: root epidermal cell differentiation	2.55E-02
136	GO:0005975: carbohydrate metabolic process	2.60E-02
137	GO:0009739: response to gibberellin	2.61E-02
138	GO:0010025: wax biosynthetic process	2.75E-02
139	GO:0006636: unsaturated fatty acid biosynthetic process	2.75E-02
140	GO:0006833: water transport	2.75E-02
141	GO:0009636: response to toxic substance	2.92E-02
142	GO:0051017: actin filament bundle assembly	2.96E-02
143	GO:0005992: trehalose biosynthetic process	2.96E-02
144	GO:0031408: oxylipin biosynthetic process	3.40E-02
145	GO:0006364: rRNA processing	3.50E-02
146	GO:0009814: defense response, incompatible interaction	3.63E-02
147	GO:0035428: hexose transmembrane transport	3.63E-02
148	GO:0006730: one-carbon metabolic process	3.63E-02
149	GO:0080092: regulation of pollen tube growth	3.63E-02
150	GO:0006857: oligopeptide transport	3.75E-02
151	GO:0071369: cellular response to ethylene stimulus	3.86E-02
152	GO:0009658: chloroplast organization	3.90E-02
153	GO:0042254: ribosome biogenesis	3.99E-02
154	GO:0048443: stamen development	4.09E-02
155	GO:0009306: protein secretion	4.09E-02
156	GO:0006412: translation	4.11E-02
157	GO:0016117: carotenoid biosynthetic process	4.33E-02
158	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.33E-02
159	GO:0048653: anther development	4.58E-02
160	GO:0042631: cellular response to water deprivation	4.58E-02
161	GO:0042335: cuticle development	4.58E-02
162	GO:0080022: primary root development	4.58E-02
163	GO:0034220: ion transmembrane transport	4.58E-02
164	GO:0009723: response to ethylene	4.66E-02
165	GO:0006520: cellular amino acid metabolic process	4.83E-02
166	GO:0010197: polar nucleus fusion	4.83E-02
167	GO:0046323: glucose import	4.83E-02
168	GO:0009741: response to brassinosteroid	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
8	GO:1990534: thermospermine oxidase activity	0.00E+00
9	GO:0016851: magnesium chelatase activity	7.12E-07
10	GO:0019843: rRNA binding	1.78E-05
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.14E-05
12	GO:0005528: FK506 binding	2.44E-05
13	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	5.37E-04
14	GO:0005227: calcium activated cation channel activity	5.37E-04
15	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	5.37E-04
16	GO:0004856: xylulokinase activity	5.37E-04
17	GO:0003867: 4-aminobutyrate transaminase activity	5.37E-04
18	GO:0045485: omega-6 fatty acid desaturase activity	5.37E-04
19	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	5.37E-04
20	GO:0004033: aldo-keto reductase (NADP) activity	7.13E-04
21	GO:0016788: hydrolase activity, acting on ester bonds	7.37E-04
22	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.16E-03
23	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.16E-03
24	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.16E-03
25	GO:0003839: gamma-glutamylcyclotransferase activity	1.16E-03
26	GO:0005094: Rho GDP-dissociation inhibitor activity	1.16E-03
27	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.16E-03
28	GO:0005381: iron ion transmembrane transporter activity	1.22E-03
29	GO:0016413: O-acetyltransferase activity	1.73E-03
30	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.90E-03
31	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.90E-03
32	GO:0003913: DNA photolyase activity	1.90E-03
33	GO:0004075: biotin carboxylase activity	1.90E-03
34	GO:0030267: glyoxylate reductase (NADP) activity	1.90E-03
35	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.90E-03
36	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.90E-03
37	GO:0015095: magnesium ion transmembrane transporter activity	2.15E-03
38	GO:0008236: serine-type peptidase activity	2.45E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	2.75E-03
40	GO:0016149: translation release factor activity, codon specific	2.75E-03
41	GO:0043023: ribosomal large subunit binding	2.75E-03
42	GO:0008097: 5S rRNA binding	2.75E-03
43	GO:0008508: bile acid:sodium symporter activity	2.75E-03
44	GO:0005096: GTPase activator activity	2.79E-03
45	GO:0010011: auxin binding	3.71E-03
46	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.71E-03
47	GO:0016836: hydro-lyase activity	3.71E-03
48	GO:0004045: aminoacyl-tRNA hydrolase activity	3.71E-03
49	GO:0016987: sigma factor activity	3.71E-03
50	GO:0009044: xylan 1,4-beta-xylosidase activity	3.71E-03
51	GO:0008526: phosphatidylinositol transporter activity	3.71E-03
52	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	3.71E-03
53	GO:0046556: alpha-L-arabinofuranosidase activity	3.71E-03
54	GO:0001053: plastid sigma factor activity	3.71E-03
55	GO:0008381: mechanically-gated ion channel activity	4.75E-03
56	GO:0016773: phosphotransferase activity, alcohol group as acceptor	4.75E-03
57	GO:0017137: Rab GTPase binding	4.75E-03
58	GO:0005471: ATP:ADP antiporter activity	4.75E-03
59	GO:0003989: acetyl-CoA carboxylase activity	4.75E-03
60	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.89E-03
61	GO:0004332: fructose-bisphosphate aldolase activity	5.89E-03
62	GO:0004130: cytochrome-c peroxidase activity	5.89E-03
63	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	5.89E-03
64	GO:0042578: phosphoric ester hydrolase activity	5.89E-03
65	GO:0005247: voltage-gated chloride channel activity	5.89E-03
66	GO:0051920: peroxiredoxin activity	7.11E-03
67	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.11E-03
68	GO:0015631: tubulin binding	7.11E-03
69	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	7.11E-03
70	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	7.11E-03
71	GO:0016491: oxidoreductase activity	7.61E-03
72	GO:0009881: photoreceptor activity	8.42E-03
73	GO:0004518: nuclease activity	8.91E-03
74	GO:0004869: cysteine-type endopeptidase inhibitor activity	9.81E-03
75	GO:0043022: ribosome binding	9.81E-03
76	GO:0004564: beta-fructofuranosidase activity	9.81E-03
77	GO:0016209: antioxidant activity	9.81E-03
78	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.28E-02
79	GO:0003747: translation release factor activity	1.28E-02
80	GO:0005215: transporter activity	1.34E-02
81	GO:0004575: sucrose alpha-glucosidase activity	1.44E-02
82	GO:0005384: manganese ion transmembrane transporter activity	1.44E-02
83	GO:0047617: acyl-CoA hydrolase activity	1.44E-02
84	GO:0016844: strictosidine synthase activity	1.44E-02
85	GO:0004805: trehalose-phosphatase activity	1.61E-02
86	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.79E-02
87	GO:0044183: protein binding involved in protein folding	1.79E-02
88	GO:0003735: structural constituent of ribosome	1.96E-02
89	GO:0008378: galactosyltransferase activity	1.97E-02
90	GO:0004565: beta-galactosidase activity	2.15E-02
91	GO:0008081: phosphoric diester hydrolase activity	2.15E-02
92	GO:0004022: alcohol dehydrogenase (NAD) activity	2.15E-02
93	GO:0003774: motor activity	2.35E-02
94	GO:0008131: primary amine oxidase activity	2.35E-02
95	GO:0008266: poly(U) RNA binding	2.35E-02
96	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.35E-02
97	GO:0004364: glutathione transferase activity	2.50E-02
98	GO:0004190: aspartic-type endopeptidase activity	2.55E-02
99	GO:0015293: symporter activity	2.92E-02
100	GO:0043424: protein histidine kinase binding	3.18E-02
101	GO:0004176: ATP-dependent peptidase activity	3.40E-02
102	GO:0033612: receptor serine/threonine kinase binding	3.40E-02
103	GO:0019706: protein-cysteine S-palmitoyltransferase activity	3.40E-02
104	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.48E-02
105	GO:0004674: protein serine/threonine kinase activity	3.58E-02
106	GO:0030246: carbohydrate binding	3.59E-02
107	GO:0016298: lipase activity	3.63E-02
108	GO:0030570: pectate lyase activity	3.86E-02
109	GO:0022891: substrate-specific transmembrane transporter activity	3.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0009507: chloroplast	7.01E-26
4	GO:0009570: chloroplast stroma	4.08E-15
5	GO:0009534: chloroplast thylakoid	6.72E-14
6	GO:0009535: chloroplast thylakoid membrane	4.16E-13
7	GO:0009941: chloroplast envelope	6.85E-13
8	GO:0009543: chloroplast thylakoid lumen	1.05E-12
9	GO:0009579: thylakoid	8.03E-10
10	GO:0031977: thylakoid lumen	1.51E-09
11	GO:0010007: magnesium chelatase complex	1.49E-07
12	GO:0031969: chloroplast membrane	5.17E-05
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	5.37E-04
14	GO:0009344: nitrite reductase complex [NAD(P)H]	5.37E-04
15	GO:0009533: chloroplast stromal thylakoid	5.72E-04
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.04E-03
17	GO:0009536: plastid	2.40E-03
18	GO:0030095: chloroplast photosystem II	2.43E-03
19	GO:0000312: plastid small ribosomal subunit	2.43E-03
20	GO:0005886: plasma membrane	2.44E-03
21	GO:0005775: vacuolar lumen	2.75E-03
22	GO:0032432: actin filament bundle	2.75E-03
23	GO:0009531: secondary cell wall	2.75E-03
24	GO:0009654: photosystem II oxygen evolving complex	3.72E-03
25	GO:0016021: integral component of membrane	3.81E-03
26	GO:0034707: chloride channel complex	5.89E-03
27	GO:0019898: extrinsic component of membrane	7.78E-03
28	GO:0016020: membrane	8.16E-03
29	GO:0046658: anchored component of plasma membrane	8.50E-03
30	GO:0010287: plastoglobule	1.40E-02
31	GO:0016324: apical plasma membrane	1.61E-02
32	GO:0016459: myosin complex	1.61E-02
33	GO:0031225: anchored component of membrane	1.73E-02
34	GO:0009505: plant-type cell wall	1.75E-02
35	GO:0005884: actin filament	1.79E-02
36	GO:0032040: small-subunit processome	1.97E-02
37	GO:0000311: plastid large ribosomal subunit	1.97E-02
38	GO:0009508: plastid chromosome	2.15E-02
39	GO:0030659: cytoplasmic vesicle membrane	2.35E-02
40	GO:0043234: protein complex	2.75E-02
41	GO:0005840: ribosome	3.09E-02
42	GO:0009506: plasmodesma	4.18E-02
43	GO:0009706: chloroplast inner membrane	4.96E-02