Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G33470

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
8GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
9GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
10GO:0018023: peptidyl-lysine trimethylation0.00E+00
11GO:0009773: photosynthetic electron transport in photosystem I1.86E-09
12GO:0006000: fructose metabolic process1.73E-07
13GO:0010206: photosystem II repair1.91E-06
14GO:0005983: starch catabolic process8.09E-06
15GO:0030388: fructose 1,6-bisphosphate metabolic process1.39E-05
16GO:0010275: NAD(P)H dehydrogenase complex assembly1.39E-05
17GO:0015979: photosynthesis1.67E-05
18GO:0006002: fructose 6-phosphate metabolic process5.29E-05
19GO:0071482: cellular response to light stimulus5.29E-05
20GO:0032544: plastid translation5.29E-05
21GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.89E-05
22GO:0015994: chlorophyll metabolic process1.70E-04
23GO:0006546: glycine catabolic process1.70E-04
24GO:0006094: gluconeogenesis2.18E-04
25GO:0009767: photosynthetic electron transport chain2.18E-04
26GO:0010207: photosystem II assembly2.59E-04
27GO:0042549: photosystem II stabilization3.63E-04
28GO:0015995: chlorophyll biosynthetic process3.99E-04
29GO:2000021: regulation of ion homeostasis5.66E-04
30GO:0043609: regulation of carbon utilization5.66E-04
31GO:0010028: xanthophyll cycle5.66E-04
32GO:0034337: RNA folding5.66E-04
33GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.66E-04
34GO:0000476: maturation of 4.5S rRNA5.66E-04
35GO:0000967: rRNA 5'-end processing5.66E-04
36GO:0019646: aerobic electron transport chain5.66E-04
37GO:0043266: regulation of potassium ion transport5.66E-04
38GO:0010480: microsporocyte differentiation5.66E-04
39GO:0031338: regulation of vesicle fusion5.66E-04
40GO:0000481: maturation of 5S rRNA5.66E-04
41GO:0042547: cell wall modification involved in multidimensional cell growth5.66E-04
42GO:0009735: response to cytokinin7.20E-04
43GO:0048507: meristem development1.12E-03
44GO:0019252: starch biosynthetic process1.18E-03
45GO:0016122: xanthophyll metabolic process1.22E-03
46GO:0010289: homogalacturonan biosynthetic process1.22E-03
47GO:0010270: photosystem II oxygen evolving complex assembly1.22E-03
48GO:0034470: ncRNA processing1.22E-03
49GO:0055129: L-proline biosynthetic process1.22E-03
50GO:0019388: galactose catabolic process1.22E-03
51GO:1900871: chloroplast mRNA modification1.22E-03
52GO:0018026: peptidyl-lysine monomethylation1.22E-03
53GO:1900865: chloroplast RNA modification1.32E-03
54GO:0019684: photosynthesis, light reaction1.78E-03
55GO:0006810: transport1.80E-03
56GO:0045493: xylan catabolic process2.00E-03
57GO:0090630: activation of GTPase activity2.00E-03
58GO:2001295: malonyl-CoA biosynthetic process2.00E-03
59GO:0000280: nuclear division2.00E-03
60GO:0006518: peptide metabolic process2.00E-03
61GO:0005986: sucrose biosynthetic process2.32E-03
62GO:0042128: nitrate assimilation2.37E-03
63GO:0055070: copper ion homeostasis2.90E-03
64GO:2001141: regulation of RNA biosynthetic process2.90E-03
65GO:0046836: glycolipid transport2.90E-03
66GO:0051639: actin filament network formation2.90E-03
67GO:0009152: purine ribonucleotide biosynthetic process2.90E-03
68GO:0046653: tetrahydrofolate metabolic process2.90E-03
69GO:0009052: pentose-phosphate shunt, non-oxidative branch2.90E-03
70GO:0009226: nucleotide-sugar biosynthetic process2.90E-03
71GO:0080170: hydrogen peroxide transmembrane transport2.90E-03
72GO:1901332: negative regulation of lateral root development2.90E-03
73GO:0009590: detection of gravity2.90E-03
74GO:0043572: plastid fission2.90E-03
75GO:0009658: chloroplast organization3.23E-03
76GO:0008152: metabolic process3.36E-03
77GO:0051764: actin crosslink formation3.91E-03
78GO:0019464: glycine decarboxylation via glycine cleavage system3.91E-03
79GO:0045727: positive regulation of translation3.91E-03
80GO:0010021: amylopectin biosynthetic process3.91E-03
81GO:0009768: photosynthesis, light harvesting in photosystem I4.03E-03
82GO:0061077: chaperone-mediated protein folding4.43E-03
83GO:0035428: hexose transmembrane transport4.85E-03
84GO:0035434: copper ion transmembrane transport5.02E-03
85GO:0006461: protein complex assembly5.02E-03
86GO:0010438: cellular response to sulfur starvation5.02E-03
87GO:0006465: signal peptide processing5.02E-03
88GO:0016120: carotene biosynthetic process5.02E-03
89GO:0048497: maintenance of floral organ identity5.02E-03
90GO:0006561: proline biosynthetic process6.22E-03
91GO:0010405: arabinogalactan protein metabolic process6.22E-03
92GO:0006751: glutathione catabolic process6.22E-03
93GO:0010256: endomembrane system organization6.22E-03
94GO:0000470: maturation of LSU-rRNA6.22E-03
95GO:0009913: epidermal cell differentiation6.22E-03
96GO:0006655: phosphatidylglycerol biosynthetic process6.22E-03
97GO:0016554: cytidine to uridine editing6.22E-03
98GO:0010190: cytochrome b6f complex assembly6.22E-03
99GO:0006828: manganese ion transport6.22E-03
100GO:0032973: amino acid export6.22E-03
101GO:0018258: protein O-linked glycosylation via hydroxyproline6.22E-03
102GO:0000741: karyogamy6.22E-03
103GO:0009759: indole glucosinolate biosynthetic process6.22E-03
104GO:0000413: protein peptidyl-prolyl isomerization6.76E-03
105GO:0046323: glucose import7.30E-03
106GO:0042372: phylloquinone biosynthetic process7.52E-03
107GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.52E-03
108GO:0006458: 'de novo' protein folding7.52E-03
109GO:0042026: protein refolding7.52E-03
110GO:0009942: longitudinal axis specification7.52E-03
111GO:0006364: rRNA processing7.96E-03
112GO:0032259: methylation8.66E-03
113GO:0009772: photosynthetic electron transport in photosystem II8.91E-03
114GO:0043090: amino acid import8.91E-03
115GO:0048437: floral organ development8.91E-03
116GO:0010196: nonphotochemical quenching8.91E-03
117GO:0009645: response to low light intensity stimulus8.91E-03
118GO:0010492: maintenance of shoot apical meristem identity1.04E-02
119GO:0005978: glycogen biosynthetic process1.04E-02
120GO:0032508: DNA duplex unwinding1.04E-02
121GO:0017004: cytochrome complex assembly1.19E-02
122GO:0009657: plastid organization1.19E-02
123GO:0042254: ribosome biogenesis1.25E-02
124GO:0055114: oxidation-reduction process1.32E-02
125GO:0006098: pentose-phosphate shunt1.36E-02
126GO:0080144: amino acid homeostasis1.36E-02
127GO:0009793: embryo development ending in seed dormancy1.46E-02
128GO:0005982: starch metabolic process1.53E-02
129GO:0010205: photoinhibition1.53E-02
130GO:0006779: porphyrin-containing compound biosynthetic process1.53E-02
131GO:0006535: cysteine biosynthetic process from serine1.71E-02
132GO:0006782: protoporphyrinogen IX biosynthetic process1.71E-02
133GO:0009817: defense response to fungus, incompatible interaction1.72E-02
134GO:0018298: protein-chromophore linkage1.72E-02
135GO:0048229: gametophyte development1.89E-02
136GO:0009684: indoleacetic acid biosynthetic process1.89E-02
137GO:0046856: phosphatidylinositol dephosphorylation1.89E-02
138GO:0006816: calcium ion transport1.89E-02
139GO:0009089: lysine biosynthetic process via diaminopimelate1.89E-02
140GO:1903507: negative regulation of nucleic acid-templated transcription1.89E-02
141GO:0006352: DNA-templated transcription, initiation1.89E-02
142GO:0009750: response to fructose1.89E-02
143GO:0042744: hydrogen peroxide catabolic process1.96E-02
144GO:0002213: defense response to insect2.08E-02
145GO:0016024: CDP-diacylglycerol biosynthetic process2.08E-02
146GO:0009637: response to blue light2.18E-02
147GO:0045454: cell redox homeostasis2.20E-02
148GO:0006633: fatty acid biosynthetic process2.22E-02
149GO:0018107: peptidyl-threonine phosphorylation2.28E-02
150GO:0009718: anthocyanin-containing compound biosynthetic process2.28E-02
151GO:0010075: regulation of meristem growth2.28E-02
152GO:0009725: response to hormone2.28E-02
153GO:0034599: cellular response to oxidative stress2.28E-02
154GO:0006006: glucose metabolic process2.28E-02
155GO:0009409: response to cold2.42E-02
156GO:0009934: regulation of meristem structural organization2.49E-02
157GO:0030001: metal ion transport2.49E-02
158GO:0010020: chloroplast fission2.49E-02
159GO:0019253: reductive pentose-phosphate cycle2.49E-02
160GO:0005985: sucrose metabolic process2.70E-02
161GO:0010114: response to red light2.82E-02
162GO:0006833: water transport2.91E-02
163GO:0000162: tryptophan biosynthetic process2.91E-02
164GO:0006636: unsaturated fatty acid biosynthetic process2.91E-02
165GO:0005975: carbohydrate metabolic process3.06E-02
166GO:0019344: cysteine biosynthetic process3.14E-02
167GO:0051017: actin filament bundle assembly3.14E-02
168GO:0006418: tRNA aminoacylation for protein translation3.37E-02
169GO:0042538: hyperosmotic salinity response3.54E-02
170GO:0080092: regulation of pollen tube growth3.84E-02
171GO:0009814: defense response, incompatible interaction3.84E-02
172GO:2000022: regulation of jasmonic acid mediated signaling pathway3.84E-02
173GO:0006857: oligopeptide transport4.06E-02
174GO:0006012: galactose metabolic process4.08E-02
175GO:0010051: xylem and phloem pattern formation4.85E-02
176GO:0048653: anther development4.85E-02
177GO:0034220: ion transmembrane transport4.85E-02
178GO:0006412: translation4.98E-02
RankGO TermAdjusted P value
1GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
4GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
5GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0043864: indoleacetamide hydrolase activity0.00E+00
8GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
9GO:0046422: violaxanthin de-epoxidase activity0.00E+00
10GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
11GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
12GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
13GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
14GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
15GO:0004822: isoleucine-tRNA ligase activity0.00E+00
16GO:0005528: FK506 binding2.55E-08
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.28E-07
18GO:0019843: rRNA binding2.23E-06
19GO:0033201: alpha-1,4-glucan synthase activity1.39E-05
20GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.39E-05
21GO:0004373: glycogen (starch) synthase activity4.67E-05
22GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.70E-04
23GO:0009011: starch synthase activity1.70E-04
24GO:0016787: hydrolase activity3.15E-04
25GO:2001070: starch binding3.63E-04
26GO:0051920: peroxiredoxin activity4.83E-04
27GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.83E-04
28GO:0004222: metalloendopeptidase activity5.47E-04
29GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity5.66E-04
30GO:0050139: nicotinate-N-glucosyltransferase activity5.66E-04
31GO:0015194: L-serine transmembrane transporter activity5.66E-04
32GO:0004856: xylulokinase activity5.66E-04
33GO:0004349: glutamate 5-kinase activity5.66E-04
34GO:0050308: sugar-phosphatase activity5.66E-04
35GO:0004350: glutamate-5-semialdehyde dehydrogenase activity5.66E-04
36GO:0019203: carbohydrate phosphatase activity5.66E-04
37GO:0003867: 4-aminobutyrate transaminase activity5.66E-04
38GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.66E-04
39GO:0045485: omega-6 fatty acid desaturase activity5.66E-04
40GO:0016209: antioxidant activity7.69E-04
41GO:0004033: aldo-keto reductase (NADP) activity7.69E-04
42GO:0050017: L-3-cyanoalanine synthase activity1.22E-03
43GO:0047746: chlorophyllase activity1.22E-03
44GO:0016868: intramolecular transferase activity, phosphotransferases1.22E-03
45GO:0003839: gamma-glutamylcyclotransferase activity1.22E-03
46GO:0004047: aminomethyltransferase activity1.22E-03
47GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.22E-03
48GO:0004614: phosphoglucomutase activity1.22E-03
49GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.22E-03
50GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.00E-03
51GO:0008864: formyltetrahydrofolate deformylase activity2.00E-03
52GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity2.00E-03
53GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity2.00E-03
54GO:0016531: copper chaperone activity2.00E-03
55GO:0019829: cation-transporting ATPase activity2.00E-03
56GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.00E-03
57GO:0002161: aminoacyl-tRNA editing activity2.00E-03
58GO:0004075: biotin carboxylase activity2.00E-03
59GO:0004751: ribose-5-phosphate isomerase activity2.00E-03
60GO:0030267: glyoxylate reductase (NADP) activity2.00E-03
61GO:0015095: magnesium ion transmembrane transporter activity2.32E-03
62GO:0008266: poly(U) RNA binding2.62E-03
63GO:0008236: serine-type peptidase activity2.71E-03
64GO:0043023: ribosomal large subunit binding2.90E-03
65GO:0017089: glycolipid transporter activity2.90E-03
66GO:0004375: glycine dehydrogenase (decarboxylating) activity2.90E-03
67GO:0019201: nucleotide kinase activity2.90E-03
68GO:0004445: inositol-polyphosphate 5-phosphatase activity2.90E-03
69GO:0016851: magnesium chelatase activity2.90E-03
70GO:0004601: peroxidase activity3.23E-03
71GO:0031409: pigment binding3.28E-03
72GO:0016491: oxidoreductase activity3.55E-03
73GO:0046556: alpha-L-arabinofuranosidase activity3.91E-03
74GO:0016279: protein-lysine N-methyltransferase activity3.91E-03
75GO:0001053: plastid sigma factor activity3.91E-03
76GO:0016836: hydro-lyase activity3.91E-03
77GO:0051861: glycolipid binding3.91E-03
78GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.91E-03
79GO:0016987: sigma factor activity3.91E-03
80GO:0009044: xylan 1,4-beta-xylosidase activity3.91E-03
81GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity3.91E-03
82GO:0004176: ATP-dependent peptidase activity4.43E-03
83GO:0004252: serine-type endopeptidase activity4.48E-03
84GO:0003989: acetyl-CoA carboxylase activity5.02E-03
85GO:0008374: O-acyltransferase activity5.02E-03
86GO:0016773: phosphotransferase activity, alcohol group as acceptor5.02E-03
87GO:0017137: Rab GTPase binding5.02E-03
88GO:0004040: amidase activity5.02E-03
89GO:0030570: pectate lyase activity5.30E-03
90GO:0008200: ion channel inhibitor activity6.22E-03
91GO:0080030: methyl indole-3-acetate esterase activity6.22E-03
92GO:1990714: hydroxyproline O-galactosyltransferase activity6.22E-03
93GO:0004332: fructose-bisphosphate aldolase activity6.22E-03
94GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity6.22E-03
95GO:0004556: alpha-amylase activity6.22E-03
96GO:0004130: cytochrome-c peroxidase activity6.22E-03
97GO:0004366: glycerol-3-phosphate O-acyltransferase activity6.22E-03
98GO:0042578: phosphoric ester hydrolase activity6.22E-03
99GO:0004124: cysteine synthase activity7.52E-03
100GO:0004017: adenylate kinase activity7.52E-03
101GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.52E-03
102GO:0005355: glucose transmembrane transporter activity7.86E-03
103GO:0048038: quinone binding9.03E-03
104GO:0003735: structural constituent of ribosome1.00E-02
105GO:0004034: aldose 1-epimerase activity1.04E-02
106GO:0043022: ribosome binding1.04E-02
107GO:0008168: methyltransferase activity1.15E-02
108GO:0008237: metallopeptidase activity1.17E-02
109GO:0005375: copper ion transmembrane transporter activity1.19E-02
110GO:0016788: hydrolase activity, acting on ester bonds1.25E-02
111GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.36E-02
112GO:0016168: chlorophyll binding1.39E-02
113GO:0047617: acyl-CoA hydrolase activity1.53E-02
114GO:0005384: manganese ion transmembrane transporter activity1.53E-02
115GO:0004721: phosphoprotein phosphatase activity1.55E-02
116GO:0044183: protein binding involved in protein folding1.89E-02
117GO:0047372: acylglycerol lipase activity1.89E-02
118GO:0005089: Rho guanyl-nucleotide exchange factor activity1.89E-02
119GO:0008378: galactosyltransferase activity2.08E-02
120GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.08E-02
121GO:0000049: tRNA binding2.08E-02
122GO:0031072: heat shock protein binding2.28E-02
123GO:0004565: beta-galactosidase activity2.28E-02
124GO:0004022: alcohol dehydrogenase (NAD) activity2.28E-02
125GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.28E-02
126GO:0046872: metal ion binding2.70E-02
127GO:0005509: calcium ion binding2.83E-02
128GO:0051537: 2 iron, 2 sulfur cluster binding3.05E-02
129GO:0003954: NADH dehydrogenase activity3.14E-02
130GO:0003714: transcription corepressor activity3.14E-02
131GO:0015293: symporter activity3.17E-02
132GO:0043424: protein histidine kinase binding3.37E-02
133GO:0015079: potassium ion transmembrane transporter activity3.37E-02
134GO:0004519: endonuclease activity3.39E-02
135GO:0004707: MAP kinase activity3.60E-02
136GO:0033612: receptor serine/threonine kinase binding3.60E-02
137GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.84E-02
138GO:0015171: amino acid transmembrane transporter activity4.20E-02
139GO:0003756: protein disulfide isomerase activity4.33E-02
140GO:0047134: protein-disulfide reductase activity4.59E-02
141GO:0004812: aminoacyl-tRNA ligase activity4.59E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
4GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
5GO:0009507: chloroplast8.34E-81
6GO:0009534: chloroplast thylakoid9.94E-42
7GO:0009535: chloroplast thylakoid membrane7.51E-35
8GO:0009570: chloroplast stroma2.43E-34
9GO:0009941: chloroplast envelope4.14E-27
10GO:0009543: chloroplast thylakoid lumen1.06E-22
11GO:0031977: thylakoid lumen2.51E-15
12GO:0009579: thylakoid1.07E-14
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.91E-10
14GO:0010287: plastoglobule1.35E-07
15GO:0009533: chloroplast stromal thylakoid4.05E-07
16GO:0030095: chloroplast photosystem II1.41E-05
17GO:0009654: photosystem II oxygen evolving complex3.50E-05
18GO:0009706: chloroplast inner membrane9.66E-05
19GO:0019898: extrinsic component of membrane1.44E-04
20GO:0031969: chloroplast membrane3.27E-04
21GO:0009547: plastid ribosome5.66E-04
22GO:0009782: photosystem I antenna complex5.66E-04
23GO:0009501: amyloplast7.69E-04
24GO:0043036: starch grain1.22E-03
25GO:0031304: intrinsic component of mitochondrial inner membrane1.22E-03
26GO:0010319: stromule1.77E-03
27GO:0048046: apoplast1.86E-03
28GO:0010007: magnesium chelatase complex2.00E-03
29GO:0000311: plastid large ribosomal subunit2.04E-03
30GO:0009508: plastid chromosome2.32E-03
31GO:0005960: glycine cleavage complex2.90E-03
32GO:0032432: actin filament bundle2.90E-03
33GO:0030076: light-harvesting complex2.94E-03
34GO:0042651: thylakoid membrane4.03E-03
35GO:0005840: ribosome5.38E-03
36GO:0016020: membrane7.39E-03
37GO:0009536: plastid7.78E-03
38GO:0009523: photosystem II8.43E-03
39GO:0009295: nucleoid1.17E-02
40GO:0042644: chloroplast nucleoid1.36E-02
41GO:0005884: actin filament1.89E-02
42GO:0032040: small-subunit processome2.08E-02
43GO:0000312: plastid small ribosomal subunit2.49E-02
44GO:0016021: integral component of membrane3.94E-02
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Gene type



Gene DE type