co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G32570

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
5	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
6	GO:2000605: positive regulation of secondary growth	0.00E+00
7	GO:0090042: tubulin deacetylation	0.00E+00
8	GO:0090627: plant epidermal cell differentiation	0.00E+00
9	GO:0090279: regulation of calcium ion import	0.00E+00
10	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
11	GO:1904526: regulation of microtubule binding	0.00E+00
12	GO:0071474: cellular hyperosmotic response	0.00E+00
13	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
14	GO:0005983: starch catabolic process	2.69E-05
15	GO:0009913: epidermal cell differentiation	9.47E-05
16	GO:0005975: carbohydrate metabolic process	1.64E-04
17	GO:0008610: lipid biosynthetic process	2.19E-04
18	GO:0000025: maltose catabolic process	2.41E-04
19	GO:0015808: L-alanine transport	2.41E-04
20	GO:0043266: regulation of potassium ion transport	2.41E-04
21	GO:0010480: microsporocyte differentiation	2.41E-04
22	GO:0031338: regulation of vesicle fusion	2.41E-04
23	GO:2000021: regulation of ion homeostasis	2.41E-04
24	GO:0010028: xanthophyll cycle	2.41E-04
25	GO:0006816: calcium ion transport	5.25E-04
26	GO:0010270: photosystem II oxygen evolving complex assembly	5.34E-04
27	GO:0015804: neutral amino acid transport	5.34E-04
28	GO:0051262: protein tetramerization	5.34E-04
29	GO:0055129: L-proline biosynthetic process	5.34E-04
30	GO:0045717: negative regulation of fatty acid biosynthetic process	5.34E-04
31	GO:0010541: acropetal auxin transport	5.34E-04
32	GO:0098712: L-glutamate import across plasma membrane	5.34E-04
33	GO:0016122: xanthophyll metabolic process	5.34E-04
34	GO:0010289: homogalacturonan biosynthetic process	5.34E-04
35	GO:0010160: formation of animal organ boundary	8.68E-04
36	GO:0006518: peptide metabolic process	8.68E-04
37	GO:0090630: activation of GTPase activity	8.68E-04
38	GO:2001295: malonyl-CoA biosynthetic process	8.68E-04
39	GO:0051639: actin filament network formation	1.24E-03
40	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.24E-03
41	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.24E-03
42	GO:0007231: osmosensory signaling pathway	1.24E-03
43	GO:0051764: actin crosslink formation	1.65E-03
44	GO:0015994: chlorophyll metabolic process	1.65E-03
45	GO:0033500: carbohydrate homeostasis	1.65E-03
46	GO:0031122: cytoplasmic microtubule organization	1.65E-03
47	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.65E-03
48	GO:0010021: amylopectin biosynthetic process	1.65E-03
49	GO:0000304: response to singlet oxygen	2.11E-03
50	GO:0016120: carotene biosynthetic process	2.11E-03
51	GO:0048497: maintenance of floral organ identity	2.11E-03
52	GO:0007094: mitotic spindle assembly checkpoint	2.11E-03
53	GO:0048825: cotyledon development	2.37E-03
54	GO:0019252: starch biosynthetic process	2.37E-03
55	GO:0010256: endomembrane system organization	2.60E-03
56	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.60E-03
57	GO:0006828: manganese ion transport	2.60E-03
58	GO:0006655: phosphatidylglycerol biosynthetic process	2.60E-03
59	GO:0060918: auxin transport	2.60E-03
60	GO:0006796: phosphate-containing compound metabolic process	2.60E-03
61	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.60E-03
62	GO:0006561: proline biosynthetic process	2.60E-03
63	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.60E-03
64	GO:0006751: glutathione catabolic process	2.60E-03
65	GO:0042549: photosystem II stabilization	2.60E-03
66	GO:1901657: glycosyl compound metabolic process	2.89E-03
67	GO:0045926: negative regulation of growth	3.12E-03
68	GO:2000033: regulation of seed dormancy process	3.12E-03
69	GO:0009942: longitudinal axis specification	3.12E-03
70	GO:0016126: sterol biosynthetic process	3.66E-03
71	GO:0043090: amino acid import	3.68E-03
72	GO:0048437: floral organ development	3.68E-03
73	GO:0010196: nonphotochemical quenching	3.68E-03
74	GO:0000105: histidine biosynthetic process	4.27E-03
75	GO:0015995: chlorophyll biosynthetic process	4.31E-03
76	GO:0006633: fatty acid biosynthetic process	4.38E-03
77	GO:0071482: cellular response to light stimulus	4.89E-03
78	GO:0015996: chlorophyll catabolic process	4.89E-03
79	GO:0009827: plant-type cell wall modification	4.89E-03
80	GO:0009657: plastid organization	4.89E-03
81	GO:0048507: meristem development	5.54E-03
82	GO:0010206: photosystem II repair	5.54E-03
83	GO:0009638: phototropism	6.21E-03
84	GO:0006779: porphyrin-containing compound biosynthetic process	6.21E-03
85	GO:0007346: regulation of mitotic cell cycle	6.21E-03
86	GO:0010162: seed dormancy process	6.92E-03
87	GO:0006782: protoporphyrinogen IX biosynthetic process	6.92E-03
88	GO:0019538: protein metabolic process	6.92E-03
89	GO:0045036: protein targeting to chloroplast	6.92E-03
90	GO:0046856: phosphatidylinositol dephosphorylation	7.65E-03
91	GO:0006415: translational termination	7.65E-03
92	GO:0048229: gametophyte development	7.65E-03
93	GO:0008361: regulation of cell size	8.41E-03
94	GO:0012501: programmed cell death	8.41E-03
95	GO:0006820: anion transport	8.41E-03
96	GO:0016024: CDP-diacylglycerol biosynthetic process	8.41E-03
97	GO:0010102: lateral root morphogenesis	9.20E-03
98	GO:0009785: blue light signaling pathway	9.20E-03
99	GO:0006006: glucose metabolic process	9.20E-03
100	GO:0010075: regulation of meristem growth	9.20E-03
101	GO:0009725: response to hormone	9.20E-03
102	GO:0042538: hyperosmotic salinity response	9.79E-03
103	GO:0010540: basipetal auxin transport	1.00E-02
104	GO:0009934: regulation of meristem structural organization	1.00E-02
105	GO:0070588: calcium ion transmembrane transport	1.09E-02
106	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.18E-02
107	GO:0007010: cytoskeleton organization	1.26E-02
108	GO:0051017: actin filament bundle assembly	1.26E-02
109	GO:0008299: isoprenoid biosynthetic process	1.35E-02
110	GO:0016575: histone deacetylation	1.35E-02
111	GO:0031408: oxylipin biosynthetic process	1.45E-02
112	GO:0048443: stamen development	1.74E-02
113	GO:0016042: lipid catabolic process	1.79E-02
114	GO:0048653: anther development	1.95E-02
115	GO:0010051: xylem and phloem pattern formation	1.95E-02
116	GO:0009845: seed germination	2.04E-02
117	GO:0045489: pectin biosynthetic process	2.05E-02
118	GO:0009958: positive gravitropism	2.05E-02
119	GO:0010305: leaf vascular tissue pattern formation	2.05E-02
120	GO:0010182: sugar mediated signaling pathway	2.05E-02
121	GO:0048868: pollen tube development	2.05E-02
122	GO:0008152: metabolic process	2.10E-02
123	GO:0009791: post-embryonic development	2.27E-02
124	GO:0071554: cell wall organization or biogenesis	2.38E-02
125	GO:0030163: protein catabolic process	2.62E-02
126	GO:0009639: response to red or far red light	2.73E-02
127	GO:0071805: potassium ion transmembrane transport	2.85E-02
128	GO:0006470: protein dephosphorylation	2.97E-02
129	GO:0010027: thylakoid membrane organization	3.10E-02
130	GO:0009816: defense response to bacterium, incompatible interaction	3.23E-02
131	GO:0009733: response to auxin	3.55E-02
132	GO:0009817: defense response to fungus, incompatible interaction	3.75E-02
133	GO:0030244: cellulose biosynthetic process	3.75E-02
134	GO:0009834: plant-type secondary cell wall biogenesis	4.01E-02
135	GO:0006811: ion transport	4.01E-02
136	GO:0010218: response to far red light	4.01E-02
137	GO:0048527: lateral root development	4.15E-02
138	GO:0016310: phosphorylation	4.25E-02
139	GO:0006865: amino acid transport	4.29E-02
140	GO:0016051: carbohydrate biosynthetic process	4.43E-02
141	GO:0009637: response to blue light	4.43E-02
142	GO:0006839: mitochondrial transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0010303: limit dextrinase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0051721: protein phosphatase 2A binding	0.00E+00
4	GO:0042903: tubulin deacetylase activity	0.00E+00
5	GO:0051060: pullulanase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
8	GO:0043014: alpha-tubulin binding	0.00E+00
9	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
10	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
11	GO:0004565: beta-galactosidase activity	3.33E-05
12	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.30E-04
13	GO:0050139: nicotinate-N-glucosyltransferase activity	2.41E-04
14	GO:0005227: calcium activated cation channel activity	2.41E-04
15	GO:0015194: L-serine transmembrane transporter activity	2.41E-04
16	GO:0004349: glutamate 5-kinase activity	2.41E-04
17	GO:0050308: sugar-phosphatase activity	2.41E-04
18	GO:0004350: glutamate-5-semialdehyde dehydrogenase activity	2.41E-04
19	GO:0004856: xylulokinase activity	2.41E-04
20	GO:0004134: 4-alpha-glucanotransferase activity	2.41E-04
21	GO:0008568: microtubule-severing ATPase activity	2.41E-04
22	GO:0070006: metalloaminopeptidase activity	2.41E-04
23	GO:0019203: carbohydrate phosphatase activity	2.41E-04
24	GO:0034256: chlorophyll(ide) b reductase activity	2.41E-04
25	GO:0004163: diphosphomevalonate decarboxylase activity	2.41E-04
26	GO:0003879: ATP phosphoribosyltransferase activity	2.41E-04
27	GO:0030941: chloroplast targeting sequence binding	2.41E-04
28	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.41E-04
29	GO:0016787: hydrolase activity	4.41E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	5.34E-04
31	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.34E-04
32	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.34E-04
33	GO:0004802: transketolase activity	5.34E-04
34	GO:0015180: L-alanine transmembrane transporter activity	5.34E-04
35	GO:0016868: intramolecular transferase activity, phosphotransferases	5.34E-04
36	GO:0003839: gamma-glutamylcyclotransferase activity	5.34E-04
37	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	8.68E-04
38	GO:0004373: glycogen (starch) synthase activity	8.68E-04
39	GO:0015193: L-proline transmembrane transporter activity	8.68E-04
40	GO:0004075: biotin carboxylase activity	8.68E-04
41	GO:0030267: glyoxylate reductase (NADP) activity	8.68E-04
42	GO:0070402: NADPH binding	8.68E-04
43	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	8.68E-04
44	GO:0005528: FK506 binding	1.05E-03
45	GO:0015186: L-glutamine transmembrane transporter activity	1.24E-03
46	GO:0019201: nucleotide kinase activity	1.24E-03
47	GO:0015175: neutral amino acid transmembrane transporter activity	1.24E-03
48	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.24E-03
49	GO:0048487: beta-tubulin binding	1.24E-03
50	GO:0016149: translation release factor activity, codon specific	1.24E-03
51	GO:0051861: glycolipid binding	1.65E-03
52	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.65E-03
53	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.65E-03
54	GO:0005313: L-glutamate transmembrane transporter activity	1.65E-03
55	GO:0004506: squalene monooxygenase activity	1.65E-03
56	GO:0009011: starch synthase activity	1.65E-03
57	GO:0008526: phosphatidylinositol transporter activity	1.65E-03
58	GO:0016836: hydro-lyase activity	1.65E-03
59	GO:0016788: hydrolase activity, acting on ester bonds	1.79E-03
60	GO:0008381: mechanically-gated ion channel activity	2.11E-03
61	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.11E-03
62	GO:0017137: Rab GTPase binding	2.11E-03
63	GO:0003989: acetyl-CoA carboxylase activity	2.11E-03
64	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.60E-03
65	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.60E-03
66	GO:0042578: phosphoric ester hydrolase activity	2.60E-03
67	GO:0004556: alpha-amylase activity	2.60E-03
68	GO:2001070: starch binding	2.60E-03
69	GO:0015631: tubulin binding	3.12E-03
70	GO:0004017: adenylate kinase activity	3.12E-03
71	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.12E-03
72	GO:0005261: cation channel activity	3.12E-03
73	GO:0004871: signal transducer activity	3.42E-03
74	GO:0016413: O-acetyltransferase activity	3.46E-03
75	GO:0004427: inorganic diphosphatase activity	3.68E-03
76	GO:0004620: phospholipase activity	3.68E-03
77	GO:0016301: kinase activity	3.89E-03
78	GO:0004033: aldo-keto reductase (NADP) activity	4.27E-03
79	GO:0043022: ribosome binding	4.27E-03
80	GO:0102483: scopolin beta-glucosidase activity	4.31E-03
81	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.89E-03
82	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.54E-03
83	GO:0003747: translation release factor activity	5.54E-03
84	GO:0005384: manganese ion transmembrane transporter activity	6.21E-03
85	GO:0047617: acyl-CoA hydrolase activity	6.21E-03
86	GO:0008422: beta-glucosidase activity	6.60E-03
87	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	6.70E-03
88	GO:0004177: aminopeptidase activity	7.65E-03
89	GO:0047372: acylglycerol lipase activity	7.65E-03
90	GO:0008378: galactosyltransferase activity	8.41E-03
91	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	8.41E-03
92	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.10E-03
93	GO:0010329: auxin efflux transmembrane transporter activity	9.20E-03
94	GO:0015095: magnesium ion transmembrane transporter activity	9.20E-03
95	GO:0005262: calcium channel activity	9.20E-03
96	GO:0004190: aspartic-type endopeptidase activity	1.09E-02
97	GO:0015171: amino acid transmembrane transporter activity	1.17E-02
98	GO:0004407: histone deacetylase activity	1.26E-02
99	GO:0052689: carboxylic ester hydrolase activity	1.29E-02
100	GO:0015079: potassium ion transmembrane transporter activity	1.35E-02
101	GO:0004707: MAP kinase activity	1.45E-02
102	GO:0033612: receptor serine/threonine kinase binding	1.45E-02
103	GO:0003779: actin binding	1.46E-02
104	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.54E-02
105	GO:0005524: ATP binding	1.91E-02
106	GO:0016853: isomerase activity	2.16E-02
107	GO:0019901: protein kinase binding	2.27E-02
108	GO:0004872: receptor activity	2.27E-02
109	GO:0048038: quinone binding	2.38E-02
110	GO:0051015: actin filament binding	2.62E-02
111	GO:0008289: lipid binding	2.81E-02
112	GO:0042802: identical protein binding	3.30E-02
113	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.35E-02
114	GO:0004721: phosphoprotein phosphatase activity	3.48E-02
115	GO:0004683: calmodulin-dependent protein kinase activity	3.48E-02
116	GO:0008236: serine-type peptidase activity	3.61E-02
117	GO:0005096: GTPase activator activity	3.88E-02
118	GO:0000287: magnesium ion binding	3.94E-02
119	GO:0004222: metalloendopeptidase activity	4.01E-02
120	GO:0030145: manganese ion binding	4.15E-02
121	GO:0008233: peptidase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.11E-18
2	GO:0009570: chloroplast stroma	4.74E-12
3	GO:0009534: chloroplast thylakoid	4.18E-10
4	GO:0009941: chloroplast envelope	2.88E-07
5	GO:0009535: chloroplast thylakoid membrane	3.22E-05
6	GO:0009543: chloroplast thylakoid lumen	7.23E-05
7	GO:0031977: thylakoid lumen	1.13E-04
8	GO:0005886: plasma membrane	1.70E-04
9	GO:0009501: amyloplast	2.19E-04
10	GO:0031969: chloroplast membrane	5.00E-04
11	GO:0032432: actin filament bundle	1.24E-03
12	GO:0005828: kinetochore microtubule	1.65E-03
13	GO:0000776: kinetochore	2.11E-03
14	GO:0010287: plastoglobule	3.06E-03
15	GO:0010369: chromocenter	3.12E-03
16	GO:0000777: condensed chromosome kinetochore	3.12E-03
17	GO:0031359: integral component of chloroplast outer membrane	3.68E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.54E-03
19	GO:0005876: spindle microtubule	6.21E-03
20	GO:0016021: integral component of membrane	6.64E-03
21	GO:0005884: actin filament	7.65E-03
22	GO:0009508: plastid chromosome	9.20E-03
23	GO:0030095: chloroplast photosystem II	1.00E-02
24	GO:0043234: protein complex	1.17E-02
25	GO:0042651: thylakoid membrane	1.35E-02
26	GO:0009579: thylakoid	1.37E-02
27	GO:0009505: plant-type cell wall	1.38E-02
28	GO:0009705: plant-type vacuole membrane	2.60E-02
29	GO:0009295: nucleoid	2.85E-02
30	GO:0009707: chloroplast outer membrane	3.75E-02
31	GO:0009506: plasmodesma	4.23E-02
32	GO:0000139: Golgi membrane	4.64E-02