Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
2GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
3GO:0048227: plasma membrane to endosome transport0.00E+00
4GO:0009991: response to extracellular stimulus0.00E+00
5GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
6GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway0.00E+00
7GO:0032780: negative regulation of ATPase activity0.00E+00
8GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
9GO:1900103: positive regulation of endoplasmic reticulum unfolded protein response0.00E+00
10GO:0010111: glyoxysome organization0.00E+00
11GO:0015031: protein transport1.56E-06
12GO:0006212: uracil catabolic process3.96E-06
13GO:0019483: beta-alanine biosynthetic process3.96E-06
14GO:0010200: response to chitin2.52E-05
15GO:0046777: protein autophosphorylation2.77E-05
16GO:0006468: protein phosphorylation3.44E-05
17GO:0051603: proteolysis involved in cellular protein catabolic process4.07E-05
18GO:0000266: mitochondrial fission4.25E-05
19GO:0009738: abscisic acid-activated signaling pathway5.62E-05
20GO:0060548: negative regulation of cell death5.68E-05
21GO:0031348: negative regulation of defense response1.60E-04
22GO:0000911: cytokinesis by cell plate formation1.78E-04
23GO:0006605: protein targeting2.94E-04
24GO:0009962: regulation of flavonoid biosynthetic process2.94E-04
25GO:0080136: priming of cellular response to stress2.94E-04
26GO:0034214: protein hexamerization2.94E-04
27GO:0010201: response to continuous far red light stimulus by the high-irradiance response system2.94E-04
28GO:1903648: positive regulation of chlorophyll catabolic process2.94E-04
29GO:0048508: embryonic meristem development2.94E-04
30GO:0016559: peroxisome fission2.94E-04
31GO:0006805: xenobiotic metabolic process2.94E-04
32GO:0000303: response to superoxide2.94E-04
33GO:0080173: male-female gamete recognition during double fertilization2.94E-04
34GO:0006481: C-terminal protein methylation2.94E-04
35GO:0010941: regulation of cell death2.94E-04
36GO:0030968: endoplasmic reticulum unfolded protein response3.62E-04
37GO:0043562: cellular response to nitrogen levels3.62E-04
38GO:0006914: autophagy4.82E-04
39GO:0009945: radial axis specification6.45E-04
40GO:0019441: tryptophan catabolic process to kynurenine6.45E-04
41GO:0019395: fatty acid oxidation6.45E-04
42GO:0031648: protein destabilization6.45E-04
43GO:0071395: cellular response to jasmonic acid stimulus6.45E-04
44GO:0010608: posttranscriptional regulation of gene expression6.45E-04
45GO:0019521: D-gluconate metabolic process6.45E-04
46GO:0030010: establishment of cell polarity6.45E-04
47GO:1902000: homogentisate catabolic process6.45E-04
48GO:0006970: response to osmotic stress6.53E-04
49GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.04E-03
50GO:0071492: cellular response to UV-A1.04E-03
51GO:0006556: S-adenosylmethionine biosynthetic process1.04E-03
52GO:0009072: aromatic amino acid family metabolic process1.04E-03
53GO:0048281: inflorescence morphogenesis1.04E-03
54GO:1900140: regulation of seedling development1.04E-03
55GO:0010359: regulation of anion channel activity1.04E-03
56GO:0061158: 3'-UTR-mediated mRNA destabilization1.04E-03
57GO:0006886: intracellular protein transport1.21E-03
58GO:0035556: intracellular signal transduction1.35E-03
59GO:0006631: fatty acid metabolic process1.40E-03
60GO:0042742: defense response to bacterium1.50E-03
61GO:0001676: long-chain fatty acid metabolic process1.50E-03
62GO:2000114: regulation of establishment of cell polarity1.50E-03
63GO:0006624: vacuolar protein processing1.50E-03
64GO:2001289: lipid X metabolic process1.50E-03
65GO:0070301: cellular response to hydrogen peroxide1.50E-03
66GO:0006809: nitric oxide biosynthetic process1.50E-03
67GO:0009399: nitrogen fixation1.50E-03
68GO:0072583: clathrin-dependent endocytosis1.50E-03
69GO:0007166: cell surface receptor signaling pathway1.71E-03
70GO:0009617: response to bacterium1.83E-03
71GO:0006878: cellular copper ion homeostasis2.01E-03
72GO:0006542: glutamine biosynthetic process2.01E-03
73GO:0071486: cellular response to high light intensity2.01E-03
74GO:0010483: pollen tube reception2.01E-03
75GO:1903830: magnesium ion transmembrane transport2.01E-03
76GO:0009765: photosynthesis, light harvesting2.01E-03
77GO:0010363: regulation of plant-type hypersensitive response2.01E-03
78GO:2000038: regulation of stomatal complex development2.01E-03
79GO:0042991: transcription factor import into nucleus2.01E-03
80GO:0009306: protein secretion2.17E-03
81GO:0010091: trichome branching2.17E-03
82GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.35E-03
83GO:0042631: cellular response to water deprivation2.54E-03
84GO:0016094: polyprenol biosynthetic process2.56E-03
85GO:0030308: negative regulation of cell growth2.56E-03
86GO:0009873: ethylene-activated signaling pathway2.59E-03
87GO:0048367: shoot system development2.93E-03
88GO:0009651: response to salt stress3.04E-03
89GO:0035435: phosphate ion transmembrane transport3.16E-03
90GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.16E-03
91GO:0006751: glutathione catabolic process3.16E-03
92GO:0070814: hydrogen sulfide biosynthetic process3.16E-03
93GO:1902456: regulation of stomatal opening3.16E-03
94GO:0010358: leaf shaping3.16E-03
95GO:0006623: protein targeting to vacuole3.16E-03
96GO:1900425: negative regulation of defense response to bacterium3.16E-03
97GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.16E-03
98GO:0009749: response to glucose3.16E-03
99GO:0006891: intra-Golgi vesicle-mediated transport3.38E-03
100GO:0010193: response to ozone3.38E-03
101GO:0009723: response to ethylene3.39E-03
102GO:0007264: small GTPase mediated signal transduction3.61E-03
103GO:0010555: response to mannitol3.81E-03
104GO:2000037: regulation of stomatal complex patterning3.81E-03
105GO:2000067: regulation of root morphogenesis3.81E-03
106GO:0009942: longitudinal axis specification3.81E-03
107GO:0006464: cellular protein modification process4.09E-03
108GO:0006904: vesicle docking involved in exocytosis4.35E-03
109GO:0015693: magnesium ion transport4.49E-03
110GO:0050790: regulation of catalytic activity4.49E-03
111GO:0010044: response to aluminum ion4.49E-03
112GO:0006401: RNA catabolic process4.49E-03
113GO:0009610: response to symbiotic fungus4.49E-03
114GO:0006955: immune response4.49E-03
115GO:0046470: phosphatidylcholine metabolic process4.49E-03
116GO:0043090: amino acid import4.49E-03
117GO:0071446: cellular response to salicylic acid stimulus4.49E-03
118GO:0015937: coenzyme A biosynthetic process4.49E-03
119GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.49E-03
120GO:1900057: positive regulation of leaf senescence4.49E-03
121GO:0051607: defense response to virus4.61E-03
122GO:0009611: response to wounding4.71E-03
123GO:0009816: defense response to bacterium, incompatible interaction5.16E-03
124GO:0009788: negative regulation of abscisic acid-activated signaling pathway5.16E-03
125GO:0048766: root hair initiation5.21E-03
126GO:0009819: drought recovery5.21E-03
127GO:0009845: seed germination5.24E-03
128GO:0009790: embryo development5.78E-03
129GO:0009880: embryonic pattern specification5.98E-03
130GO:0010120: camalexin biosynthetic process5.98E-03
131GO:0007186: G-protein coupled receptor signaling pathway5.98E-03
132GO:0051865: protein autoubiquitination6.77E-03
133GO:0090305: nucleic acid phosphodiester bond hydrolysis6.77E-03
134GO:0006098: pentose-phosphate shunt6.77E-03
135GO:0090333: regulation of stomatal closure6.77E-03
136GO:0010150: leaf senescence7.15E-03
137GO:0048364: root development7.27E-03
138GO:0048527: lateral root development7.37E-03
139GO:0010119: regulation of stomatal movement7.37E-03
140GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.60E-03
141GO:0008202: steroid metabolic process7.60E-03
142GO:0042761: very long-chain fatty acid biosynthetic process7.60E-03
143GO:2000280: regulation of root development7.60E-03
144GO:0048268: clathrin coat assembly7.60E-03
145GO:0009737: response to abscisic acid7.78E-03
146GO:0009867: jasmonic acid mediated signaling pathway8.08E-03
147GO:0019538: protein metabolic process8.48E-03
148GO:0043069: negative regulation of programmed cell death8.48E-03
149GO:0010629: negative regulation of gene expression8.48E-03
150GO:0000103: sulfate assimilation8.48E-03
151GO:0010468: regulation of gene expression8.96E-03
152GO:0009750: response to fructose9.38E-03
153GO:0030148: sphingolipid biosynthetic process9.38E-03
154GO:0010072: primary shoot apical meristem specification9.38E-03
155GO:0072593: reactive oxygen species metabolic process9.38E-03
156GO:0012501: programmed cell death1.03E-02
157GO:0010102: lateral root morphogenesis1.13E-02
158GO:0006807: nitrogen compound metabolic process1.13E-02
159GO:0010229: inflorescence development1.13E-02
160GO:0055046: microgametogenesis1.13E-02
161GO:0009887: animal organ morphogenesis1.23E-02
162GO:0007034: vacuolar transport1.23E-02
163GO:0070588: calcium ion transmembrane transport1.33E-02
164GO:0010053: root epidermal cell differentiation1.33E-02
165GO:0009825: multidimensional cell growth1.33E-02
166GO:0010167: response to nitrate1.33E-02
167GO:0006486: protein glycosylation1.41E-02
168GO:0009736: cytokinin-activated signaling pathway1.41E-02
169GO:0034976: response to endoplasmic reticulum stress1.44E-02
170GO:2000377: regulation of reactive oxygen species metabolic process1.55E-02
171GO:0006979: response to oxidative stress1.57E-02
172GO:0016575: histone deacetylation1.66E-02
173GO:0009695: jasmonic acid biosynthetic process1.66E-02
174GO:0009626: plant-type hypersensitive response1.78E-02
175GO:0061077: chaperone-mediated protein folding1.78E-02
176GO:0031408: oxylipin biosynthetic process1.78E-02
177GO:0006730: one-carbon metabolic process1.90E-02
178GO:0007005: mitochondrion organization1.90E-02
179GO:0009814: defense response, incompatible interaction1.90E-02
180GO:0009693: ethylene biosynthetic process2.02E-02
181GO:0071215: cellular response to abscisic acid stimulus2.02E-02
182GO:0018105: peptidyl-serine phosphorylation2.07E-02
183GO:0045892: negative regulation of transcription, DNA-templated2.10E-02
184GO:0009561: megagametogenesis2.14E-02
185GO:0070417: cellular response to cold2.27E-02
186GO:0042147: retrograde transport, endosome to Golgi2.27E-02
187GO:0006351: transcription, DNA-templated2.34E-02
188GO:0010051: xylem and phloem pattern formation2.40E-02
189GO:0010154: fruit development2.53E-02
190GO:0010197: polar nucleus fusion2.53E-02
191GO:0071472: cellular response to salt stress2.53E-02
192GO:0009409: response to cold2.58E-02
193GO:0048544: recognition of pollen2.66E-02
194GO:0008654: phospholipid biosynthetic process2.80E-02
195GO:0010183: pollen tube guidance2.80E-02
196GO:0048825: cotyledon development2.80E-02
197GO:0002229: defense response to oomycetes2.94E-02
198GO:0006635: fatty acid beta-oxidation2.94E-02
199GO:0071554: cell wall organization or biogenesis2.94E-02
200GO:0010583: response to cyclopentenone3.08E-02
201GO:0016032: viral process3.08E-02
202GO:0071281: cellular response to iron ion3.22E-02
203GO:0046686: response to cadmium ion3.26E-02
204GO:0040008: regulation of growth3.32E-02
205GO:0071805: potassium ion transmembrane transport3.51E-02
206GO:0000910: cytokinesis3.66E-02
207GO:0006470: protein dephosphorylation3.97E-02
208GO:0042128: nitrate assimilation4.13E-02
209GO:0048573: photoperiodism, flowering4.29E-02
210GO:0006950: response to stress4.29E-02
211GO:0008219: cell death4.61E-02
212GO:0048481: plant ovule development4.61E-02
213GO:0009817: defense response to fungus, incompatible interaction4.61E-02
214GO:0007275: multicellular organism development4.77E-02
215GO:0006499: N-terminal protein myristoylation4.94E-02
216GO:0009407: toxin catabolic process4.94E-02
RankGO TermAdjusted P value
1GO:0004157: dihydropyrimidinase activity0.00E+00
2GO:0042030: ATPase inhibitor activity0.00E+00
3GO:0016504: peptidase activator activity0.00E+00
4GO:0016034: maleylacetoacetate isomerase activity0.00E+00
5GO:0004168: dolichol kinase activity0.00E+00
6GO:0003837: beta-ureidopropionase activity0.00E+00
7GO:0070577: lysine-acetylated histone binding0.00E+00
8GO:0033550: MAP kinase tyrosine phosphatase activity0.00E+00
9GO:0005515: protein binding1.19E-08
10GO:0005524: ATP binding4.11E-08
11GO:0004672: protein kinase activity9.14E-05
12GO:0102391: decanoate--CoA ligase activity1.78E-04
13GO:0016301: kinase activity1.89E-04
14GO:0008565: protein transporter activity1.93E-04
15GO:0004467: long-chain fatty acid-CoA ligase activity2.33E-04
16GO:0019786: Atg8-specific protease activity2.94E-04
17GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity2.94E-04
18GO:0003924: GTPase activity3.85E-04
19GO:0004197: cysteine-type endopeptidase activity4.09E-04
20GO:0004674: protein serine/threonine kinase activity4.84E-04
21GO:0004713: protein tyrosine kinase activity6.02E-04
22GO:0019779: Atg8 activating enzyme activity6.45E-04
23GO:0003988: acetyl-CoA C-acyltransferase activity6.45E-04
24GO:0004594: pantothenate kinase activity6.45E-04
25GO:0045140: inositol phosphoceramide synthase activity6.45E-04
26GO:0004061: arylformamidase activity6.45E-04
27GO:0031683: G-protein beta/gamma-subunit complex binding1.04E-03
28GO:0004781: sulfate adenylyltransferase (ATP) activity1.04E-03
29GO:0016805: dipeptidase activity1.04E-03
30GO:0004478: methionine adenosyltransferase activity1.04E-03
31GO:0001664: G-protein coupled receptor binding1.04E-03
32GO:0005093: Rab GDP-dissociation inhibitor activity1.04E-03
33GO:0005047: signal recognition particle binding1.04E-03
34GO:0000975: regulatory region DNA binding1.04E-03
35GO:0003840: gamma-glutamyltransferase activity1.04E-03
36GO:0036374: glutathione hydrolase activity1.04E-03
37GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.50E-03
38GO:0004416: hydroxyacylglutathione hydrolase activity1.50E-03
39GO:0043424: protein histidine kinase binding1.53E-03
40GO:0004707: MAP kinase activity1.68E-03
41GO:0033612: receptor serine/threonine kinase binding1.68E-03
42GO:0019776: Atg8 ligase activity2.01E-03
43GO:0016004: phospholipase activator activity2.01E-03
44GO:0004301: epoxide hydrolase activity2.01E-03
45GO:0070628: proteasome binding2.01E-03
46GO:0005496: steroid binding2.56E-03
47GO:0031386: protein tag2.56E-03
48GO:0004356: glutamate-ammonia ligase activity2.56E-03
49GO:0002094: polyprenyltransferase activity2.56E-03
50GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.56E-03
51GO:0030276: clathrin binding2.74E-03
52GO:0004605: phosphatidate cytidylyltransferase activity3.16E-03
53GO:0031593: polyubiquitin binding3.16E-03
54GO:0047714: galactolipase activity3.16E-03
55GO:0005525: GTP binding3.26E-03
56GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.81E-03
57GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.81E-03
58GO:0003950: NAD+ ADP-ribosyltransferase activity3.81E-03
59GO:0005509: calcium ion binding4.19E-03
60GO:0004620: phospholipase activity4.49E-03
61GO:0008235: metalloexopeptidase activity4.49E-03
62GO:0004869: cysteine-type endopeptidase inhibitor activity5.21E-03
63GO:0004714: transmembrane receptor protein tyrosine kinase activity5.21E-03
64GO:0004871: signal transducer activity5.32E-03
65GO:0009931: calcium-dependent protein serine/threonine kinase activity5.45E-03
66GO:0004683: calmodulin-dependent protein kinase activity5.75E-03
67GO:0008142: oxysterol binding5.98E-03
68GO:0004630: phospholipase D activity5.98E-03
69GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.98E-03
70GO:0008970: phosphatidylcholine 1-acylhydrolase activity5.98E-03
71GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity5.98E-03
72GO:0005096: GTPase activator activity6.69E-03
73GO:0045309: protein phosphorylated amino acid binding7.60E-03
74GO:0005545: 1-phosphatidylinositol binding8.48E-03
75GO:0004712: protein serine/threonine/tyrosine kinase activity8.83E-03
76GO:0008794: arsenate reductase (glutaredoxin) activity9.38E-03
77GO:0004177: aminopeptidase activity9.38E-03
78GO:0019904: protein domain specific binding9.38E-03
79GO:0004364: glutathione transferase activity1.00E-02
80GO:0004521: endoribonuclease activity1.03E-02
81GO:0005315: inorganic phosphate transmembrane transporter activity1.13E-02
82GO:0015095: magnesium ion transmembrane transporter activity1.13E-02
83GO:0005388: calcium-transporting ATPase activity1.13E-02
84GO:0004175: endopeptidase activity1.23E-02
85GO:0016887: ATPase activity1.32E-02
86GO:0004725: protein tyrosine phosphatase activity1.44E-02
87GO:0003954: NADH dehydrogenase activity1.55E-02
88GO:0004407: histone deacetylase activity1.55E-02
89GO:0005528: FK506 binding1.55E-02
90GO:0008234: cysteine-type peptidase activity1.56E-02
91GO:0015079: potassium ion transmembrane transporter activity1.66E-02
92GO:0004298: threonine-type endopeptidase activity1.78E-02
93GO:0003727: single-stranded RNA binding2.14E-02
94GO:0003756: protein disulfide isomerase activity2.14E-02
95GO:0030246: carbohydrate binding2.52E-02
96GO:0046873: metal ion transmembrane transporter activity2.53E-02
97GO:0001085: RNA polymerase II transcription factor binding2.53E-02
98GO:0016853: isomerase activity2.66E-02
99GO:0005516: calmodulin binding2.97E-02
100GO:0004518: nuclease activity3.08E-02
101GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.24E-02
102GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.51E-02
103GO:0016413: O-acetyltransferase activity3.66E-02
104GO:0003700: transcription factor activity, sequence-specific DNA binding3.68E-02
105GO:0016168: chlorophyll binding3.97E-02
106GO:0030247: polysaccharide binding4.29E-02
107GO:0004806: triglyceride lipase activity4.29E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0019822: P4 peroxisome0.00E+00
3GO:0005783: endoplasmic reticulum2.05E-07
4GO:0005886: plasma membrane5.20E-07
5GO:0005829: cytosol1.13E-05
6GO:0030139: endocytic vesicle1.41E-05
7GO:0005776: autophagosome5.68E-05
8GO:0005773: vacuole6.87E-05
9GO:0005777: peroxisome9.46E-05
10GO:0030136: clathrin-coated vesicle2.29E-04
11GO:0045334: clathrin-coated endocytic vesicle2.94E-04
12GO:0016021: integral component of membrane3.00E-04
13GO:0017119: Golgi transport complex6.02E-04
14GO:0031304: intrinsic component of mitochondrial inner membrane6.45E-04
15GO:0005764: lysosome1.01E-03
16GO:0042406: extrinsic component of endoplasmic reticulum membrane1.04E-03
17GO:0005795: Golgi stack1.13E-03
18GO:0031902: late endosome membrane1.40E-03
19GO:0005775: vacuolar lumen1.50E-03
20GO:0000323: lytic vacuole1.50E-03
21GO:0032585: multivesicular body membrane1.50E-03
22GO:0005839: proteasome core complex1.68E-03
23GO:0005741: mitochondrial outer membrane1.68E-03
24GO:0031410: cytoplasmic vesicle1.83E-03
25GO:0000164: protein phosphatase type 1 complex2.56E-03
26GO:0005794: Golgi apparatus2.81E-03
27GO:0030904: retromer complex3.16E-03
28GO:0005774: vacuolar membrane3.30E-03
29GO:0005789: endoplasmic reticulum membrane3.79E-03
30GO:0016363: nuclear matrix3.81E-03
31GO:0005768: endosome3.99E-03
32GO:0005778: peroxisomal membrane4.35E-03
33GO:0005623: cell4.91E-03
34GO:0009524: phragmoplast5.07E-03
35GO:0000421: autophagosome membrane5.21E-03
36GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.98E-03
37GO:0009514: glyoxysome5.98E-03
38GO:0031901: early endosome membrane6.77E-03
39GO:0030665: clathrin-coated vesicle membrane7.60E-03
40GO:0005802: trans-Golgi network1.03E-02
41GO:0016602: CCAAT-binding factor complex1.13E-02
42GO:0005622: intracellular1.23E-02
43GO:0031966: mitochondrial membrane1.31E-02
44GO:0030176: integral component of endoplasmic reticulum membrane1.33E-02
45GO:0005769: early endosome1.44E-02
46GO:0005635: nuclear envelope1.51E-02
47GO:0045271: respiratory chain complex I1.66E-02
48GO:0005834: heterotrimeric G-protein complex1.78E-02
49GO:0005905: clathrin-coated pit1.78E-02
50GO:0005737: cytoplasm1.83E-02
51GO:0009523: photosystem II2.80E-02
52GO:0019898: extrinsic component of membrane2.80E-02
53GO:0009504: cell plate2.80E-02
54GO:0071944: cell periphery3.22E-02
55GO:0005615: extracellular space3.88E-02
56GO:0005887: integral component of plasma membrane3.91E-02
57GO:0005788: endoplasmic reticulum lumen3.97E-02
58GO:0005667: transcription factor complex4.13E-02
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Gene type



Gene DE type