co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity	0.00E+00
2	GO:0016236: macroautophagy	0.00E+00
3	GO:0090421: embryonic meristem initiation	0.00E+00
4	GO:0009880: embryonic pattern specification	1.10E-05
5	GO:0001708: cell fate specification	1.39E-05
6	GO:0031338: regulation of vesicle fusion	3.00E-05
7	GO:0030242: pexophagy	3.00E-05
8	GO:2000693: positive regulation of seed maturation	7.58E-05
9	GO:0043631: RNA polyadenylation	7.58E-05
10	GO:0002240: response to molecule of oomycetes origin	7.58E-05
11	GO:0055078: sodium ion homeostasis	7.58E-05
12	GO:0007032: endosome organization	1.32E-04
13	GO:0090630: activation of GTPase activity	1.32E-04
14	GO:2000114: regulation of establishment of cell polarity	1.97E-04
15	GO:0032456: endocytic recycling	1.97E-04
16	GO:0072583: clathrin-dependent endocytosis	1.97E-04
17	GO:0006904: vesicle docking involved in exocytosis	2.14E-04
18	GO:0045324: late endosome to vacuole transport	2.67E-04
19	GO:0055075: potassium ion homeostasis	6.76E-04
20	GO:0048766: root hair initiation	6.76E-04
21	GO:0048193: Golgi vesicle transport	7.68E-04
22	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	8.63E-04
23	GO:0010345: suberin biosynthetic process	8.63E-04
24	GO:0009821: alkaloid biosynthetic process	8.63E-04
25	GO:0009638: phototropism	9.61E-04
26	GO:0048268: clathrin coat assembly	9.61E-04
27	GO:0043069: negative regulation of programmed cell death	1.06E-03
28	GO:0031627: telomeric loop formation	1.06E-03
29	GO:0006378: mRNA polyadenylation	1.16E-03
30	GO:0000266: mitochondrial fission	1.27E-03
31	GO:0009785: blue light signaling pathway	1.38E-03
32	GO:0010143: cutin biosynthetic process	1.50E-03
33	GO:0007033: vacuole organization	1.61E-03
34	GO:0007030: Golgi organization	1.61E-03
35	GO:0010025: wax biosynthetic process	1.73E-03
36	GO:0008299: isoprenoid biosynthetic process	1.98E-03
37	GO:0030433: ubiquitin-dependent ERAD pathway	2.25E-03
38	GO:0010091: trichome branching	2.52E-03
39	GO:0009306: protein secretion	2.52E-03
40	GO:0042147: retrograde transport, endosome to Golgi	2.66E-03
41	GO:0010501: RNA secondary structure unwinding	2.80E-03
42	GO:0042335: cuticle development	2.80E-03
43	GO:0009723: response to ethylene	2.84E-03
44	GO:0006623: protein targeting to vacuole	3.24E-03
45	GO:0009630: gravitropism	3.55E-03
46	GO:0006950: response to stress	4.88E-03
47	GO:0010311: lateral root formation	5.41E-03
48	GO:0048527: lateral root development	5.78E-03
49	GO:0006887: exocytosis	6.94E-03
50	GO:0006897: endocytosis	6.94E-03
51	GO:0009908: flower development	7.15E-03
52	GO:0009846: pollen germination	8.60E-03
53	GO:0006364: rRNA processing	9.03E-03
54	GO:0045893: positive regulation of transcription, DNA-templated	9.08E-03
55	GO:0009626: plant-type hypersensitive response	1.06E-02
56	GO:0009553: embryo sac development	1.13E-02
57	GO:0040008: regulation of growth	1.65E-02
58	GO:0010228: vegetative to reproductive phase transition of meristem	1.76E-02
59	GO:0009739: response to gibberellin	1.85E-02
60	GO:0006470: protein dephosphorylation	1.87E-02
61	GO:0007049: cell cycle	2.51E-02
62	GO:0048366: leaf development	2.61E-02
63	GO:0016192: vesicle-mediated transport	2.81E-02
64	GO:0045892: negative regulation of transcription, DNA-templated	3.11E-02
65	GO:0006886: intracellular protein transport	3.15E-02
66	GO:0009737: response to abscisic acid	3.43E-02
67	GO:0009751: response to salicylic acid	3.54E-02
68	GO:0006397: mRNA processing	3.69E-02
69	GO:0009753: response to jasmonic acid	3.76E-02
70	GO:0009873: ethylene-activated signaling pathway	4.29E-02
71	GO:0009734: auxin-activated signaling pathway	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	0.00E+00
2	GO:0008301: DNA binding, bending	3.00E-05
3	GO:0004750: ribulose-phosphate 3-epimerase activity	7.58E-05
4	GO:0005515: protein binding	7.90E-05
5	GO:0030276: clathrin binding	1.30E-04
6	GO:0004652: polynucleotide adenylyltransferase activity	1.97E-04
7	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	2.67E-04
8	GO:0005096: GTPase activator activity	3.32E-04
9	GO:0017137: Rab GTPase binding	3.42E-04
10	GO:0042162: telomeric DNA binding	5.88E-04
11	GO:0005545: 1-phosphatidylinositol binding	1.06E-03
12	GO:0003691: double-stranded telomeric DNA binding	1.16E-03
13	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.11E-03
14	GO:0016779: nucleotidyltransferase activity	2.25E-03
15	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.03E-03
16	GO:0051213: dioxygenase activity	4.36E-03
17	GO:0003924: GTPase activity	4.47E-03
18	GO:0004004: ATP-dependent RNA helicase activity	4.88E-03
19	GO:0004222: metalloendopeptidase activity	5.60E-03
20	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.16E-03
21	GO:0004712: protein serine/threonine/tyrosine kinase activity	6.54E-03
22	GO:0016887: ATPase activity	6.91E-03
23	GO:0005524: ATP binding	8.40E-03
24	GO:0045735: nutrient reservoir activity	1.02E-02
25	GO:0004386: helicase activity	1.23E-02
26	GO:0005525: GTP binding	1.30E-02
27	GO:0008017: microtubule binding	1.76E-02
28	GO:0004674: protein serine/threonine kinase activity	2.00E-02
29	GO:0004842: ubiquitin-protein transferase activity	2.22E-02
30	GO:0046982: protein heterodimerization activity	2.29E-02
31	GO:0016301: kinase activity	2.96E-02
32	GO:0004722: protein serine/threonine phosphatase activity	3.29E-02
33	GO:0003677: DNA binding	3.34E-02
34	GO:0046872: metal ion binding	3.36E-02

Rank	GO Term	Adjusted P value
1	GO:1990745: EARP complex	0.00E+00
2	GO:0071561: nucleus-vacuole junction	0.00E+00
3	GO:0034271: phosphatidylinositol 3-kinase complex, class III, type I	3.00E-05
4	GO:0034272: phosphatidylinositol 3-kinase complex, class III, type II	3.00E-05
5	GO:0045334: clathrin-coated endocytic vesicle	3.00E-05
6	GO:0000938: GARP complex	7.58E-05
7	GO:0032585: multivesicular body membrane	1.97E-04
8	GO:0005771: multivesicular body	4.20E-04
9	GO:0000783: nuclear telomere cap complex	7.68E-04
10	GO:0030176: integral component of endoplasmic reticulum membrane	1.61E-03
11	GO:0005905: clathrin-coated pit	2.11E-03
12	GO:0030136: clathrin-coated vesicle	2.66E-03
13	GO:0005770: late endosome	2.94E-03
14	GO:0009504: cell plate	3.24E-03
15	GO:0000145: exocyst	3.55E-03
16	GO:0005643: nuclear pore	5.23E-03
17	GO:0005634: nucleus	8.70E-03
18	GO:0005794: Golgi apparatus	1.00E-02
19	GO:0012505: endomembrane system	1.13E-02
20	GO:0005886: plasma membrane	1.24E-02
21	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.48E-02
22	GO:0005737: cytoplasm	2.54E-02
23	GO:0005874: microtubule	2.64E-02