GO Enrichment Analysis of Co-expressed Genes with
AT4G31040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 2 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 3 | GO:0009249: protein lipoylation | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 6 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 7 | GO:0042407: cristae formation | 0.00E+00 |
| 8 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 9 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 10 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 11 | GO:0006412: translation | 2.00E-22 |
| 12 | GO:0032544: plastid translation | 3.58E-17 |
| 13 | GO:0042254: ribosome biogenesis | 2.42E-13 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 5.89E-11 |
| 15 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.80E-09 |
| 16 | GO:0006783: heme biosynthetic process | 1.59E-07 |
| 17 | GO:0009658: chloroplast organization | 6.09E-07 |
| 18 | GO:0015979: photosynthesis | 2.29E-06 |
| 19 | GO:0009735: response to cytokinin | 3.98E-06 |
| 20 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.65E-05 |
| 21 | GO:0010027: thylakoid membrane organization | 4.29E-05 |
| 22 | GO:0045038: protein import into chloroplast thylakoid membrane | 7.79E-05 |
| 23 | GO:0010190: cytochrome b6f complex assembly | 1.13E-04 |
| 24 | GO:1901259: chloroplast rRNA processing | 1.56E-04 |
| 25 | GO:0009306: protein secretion | 1.72E-04 |
| 26 | GO:0009772: photosynthetic electron transport in photosystem II | 2.04E-04 |
| 27 | GO:0042255: ribosome assembly | 2.58E-04 |
| 28 | GO:0009793: embryo development ending in seed dormancy | 2.67E-04 |
| 29 | GO:1902458: positive regulation of stomatal opening | 2.70E-04 |
| 30 | GO:0034337: RNA folding | 2.70E-04 |
| 31 | GO:0048363: mucilage pectin metabolic process | 2.70E-04 |
| 32 | GO:0043489: RNA stabilization | 2.70E-04 |
| 33 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.70E-04 |
| 34 | GO:1904964: positive regulation of phytol biosynthetic process | 2.70E-04 |
| 35 | GO:0042371: vitamin K biosynthetic process | 2.70E-04 |
| 36 | GO:0071482: cellular response to light stimulus | 3.19E-04 |
| 37 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 5.94E-04 |
| 38 | GO:0006568: tryptophan metabolic process | 5.94E-04 |
| 39 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 5.94E-04 |
| 40 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.94E-04 |
| 41 | GO:0006423: cysteinyl-tRNA aminoacylation | 5.94E-04 |
| 42 | GO:0071668: plant-type cell wall assembly | 5.94E-04 |
| 43 | GO:0009773: photosynthetic electron transport in photosystem I | 6.14E-04 |
| 44 | GO:0006352: DNA-templated transcription, initiation | 6.14E-04 |
| 45 | GO:0009409: response to cold | 6.84E-04 |
| 46 | GO:0009790: embryo development | 8.97E-04 |
| 47 | GO:0015714: phosphoenolpyruvate transport | 9.62E-04 |
| 48 | GO:0006954: inflammatory response | 9.62E-04 |
| 49 | GO:0090391: granum assembly | 9.62E-04 |
| 50 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 9.62E-04 |
| 51 | GO:0006518: peptide metabolic process | 9.62E-04 |
| 52 | GO:0006760: folic acid-containing compound metabolic process | 9.62E-04 |
| 53 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.11E-03 |
| 54 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.38E-03 |
| 55 | GO:0006241: CTP biosynthetic process | 1.38E-03 |
| 56 | GO:0006165: nucleoside diphosphate phosphorylation | 1.38E-03 |
| 57 | GO:0006228: UTP biosynthetic process | 1.38E-03 |
| 58 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.38E-03 |
| 59 | GO:2001141: regulation of RNA biosynthetic process | 1.38E-03 |
| 60 | GO:0006183: GTP biosynthetic process | 1.84E-03 |
| 61 | GO:0015713: phosphoglycerate transport | 1.84E-03 |
| 62 | GO:0046656: folic acid biosynthetic process | 1.84E-03 |
| 63 | GO:0071483: cellular response to blue light | 1.84E-03 |
| 64 | GO:0008033: tRNA processing | 2.24E-03 |
| 65 | GO:0009107: lipoate biosynthetic process | 2.35E-03 |
| 66 | GO:0009247: glycolipid biosynthetic process | 2.35E-03 |
| 67 | GO:0034052: positive regulation of plant-type hypersensitive response | 2.35E-03 |
| 68 | GO:0032543: mitochondrial translation | 2.35E-03 |
| 69 | GO:0010236: plastoquinone biosynthetic process | 2.35E-03 |
| 70 | GO:0042549: photosystem II stabilization | 2.90E-03 |
| 71 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.90E-03 |
| 72 | GO:0032973: amino acid export | 2.90E-03 |
| 73 | GO:0032502: developmental process | 3.18E-03 |
| 74 | GO:0009955: adaxial/abaxial pattern specification | 3.49E-03 |
| 75 | GO:0042026: protein refolding | 3.49E-03 |
| 76 | GO:0042372: phylloquinone biosynthetic process | 3.49E-03 |
| 77 | GO:0017148: negative regulation of translation | 3.49E-03 |
| 78 | GO:0046654: tetrahydrofolate biosynthetic process | 3.49E-03 |
| 79 | GO:0010019: chloroplast-nucleus signaling pathway | 3.49E-03 |
| 80 | GO:0042742: defense response to bacterium | 3.81E-03 |
| 81 | GO:0043090: amino acid import | 4.12E-03 |
| 82 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 4.12E-03 |
| 83 | GO:0006821: chloride transport | 4.12E-03 |
| 84 | GO:0048564: photosystem I assembly | 4.77E-03 |
| 85 | GO:0006353: DNA-templated transcription, termination | 4.77E-03 |
| 86 | GO:0043068: positive regulation of programmed cell death | 4.77E-03 |
| 87 | GO:0006605: protein targeting | 4.77E-03 |
| 88 | GO:0019375: galactolipid biosynthetic process | 4.77E-03 |
| 89 | GO:2000070: regulation of response to water deprivation | 4.77E-03 |
| 90 | GO:0009627: systemic acquired resistance | 4.80E-03 |
| 91 | GO:0009657: plastid organization | 5.47E-03 |
| 92 | GO:0006457: protein folding | 5.69E-03 |
| 93 | GO:0009245: lipid A biosynthetic process | 6.20E-03 |
| 94 | GO:0080144: amino acid homeostasis | 6.20E-03 |
| 95 | GO:0010205: photoinhibition | 6.96E-03 |
| 96 | GO:0043067: regulation of programmed cell death | 6.96E-03 |
| 97 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 6.96E-03 |
| 98 | GO:0008380: RNA splicing | 7.61E-03 |
| 99 | GO:0006535: cysteine biosynthetic process from serine | 7.75E-03 |
| 100 | GO:0045036: protein targeting to chloroplast | 7.75E-03 |
| 101 | GO:0019684: photosynthesis, light reaction | 8.58E-03 |
| 102 | GO:0009089: lysine biosynthetic process via diaminopimelate | 8.58E-03 |
| 103 | GO:0006415: translational termination | 8.58E-03 |
| 104 | GO:0009073: aromatic amino acid family biosynthetic process | 8.58E-03 |
| 105 | GO:0043085: positive regulation of catalytic activity | 8.58E-03 |
| 106 | GO:0016024: CDP-diacylglycerol biosynthetic process | 9.44E-03 |
| 107 | GO:0045037: protein import into chloroplast stroma | 9.44E-03 |
| 108 | GO:0009691: cytokinin biosynthetic process | 1.03E-02 |
| 109 | GO:0010628: positive regulation of gene expression | 1.03E-02 |
| 110 | GO:0010207: photosystem II assembly | 1.12E-02 |
| 111 | GO:0090351: seedling development | 1.22E-02 |
| 112 | GO:0019344: cysteine biosynthetic process | 1.42E-02 |
| 113 | GO:0000027: ribosomal large subunit assembly | 1.42E-02 |
| 114 | GO:0061077: chaperone-mediated protein folding | 1.62E-02 |
| 115 | GO:0031408: oxylipin biosynthetic process | 1.62E-02 |
| 116 | GO:0009814: defense response, incompatible interaction | 1.73E-02 |
| 117 | GO:0007005: mitochondrion organization | 1.73E-02 |
| 118 | GO:0009411: response to UV | 1.84E-02 |
| 119 | GO:0016117: carotenoid biosynthetic process | 2.07E-02 |
| 120 | GO:0042335: cuticle development | 2.19E-02 |
| 121 | GO:0000271: polysaccharide biosynthetic process | 2.19E-02 |
| 122 | GO:0000413: protein peptidyl-prolyl isomerization | 2.19E-02 |
| 123 | GO:0009741: response to brassinosteroid | 2.31E-02 |
| 124 | GO:0045489: pectin biosynthetic process | 2.31E-02 |
| 125 | GO:0006662: glycerol ether metabolic process | 2.31E-02 |
| 126 | GO:0010197: polar nucleus fusion | 2.31E-02 |
| 127 | GO:0015986: ATP synthesis coupled proton transport | 2.43E-02 |
| 128 | GO:0010183: pollen tube guidance | 2.55E-02 |
| 129 | GO:0006633: fatty acid biosynthetic process | 2.79E-02 |
| 130 | GO:0006413: translational initiation | 2.85E-02 |
| 131 | GO:1901657: glycosyl compound metabolic process | 2.94E-02 |
| 132 | GO:0009567: double fertilization forming a zygote and endosperm | 3.07E-02 |
| 133 | GO:0009451: RNA modification | 3.13E-02 |
| 134 | GO:0018298: protein-chromophore linkage | 4.21E-02 |
| 135 | GO:0008219: cell death | 4.21E-02 |
| 136 | GO:0009631: cold acclimation | 4.66E-02 |
| 137 | GO:0009637: response to blue light | 4.97E-02 |
| 138 | GO:0045087: innate immune response | 4.97E-02 |
| 139 | GO:0016051: carbohydrate biosynthetic process | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 4 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 5 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 6 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 7 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 8 | GO:0004853: uroporphyrinogen decarboxylase activity | 0.00E+00 |
| 9 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 10 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 11 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 12 | GO:0019843: rRNA binding | 2.47E-29 |
| 13 | GO:0003735: structural constituent of ribosome | 6.93E-25 |
| 14 | GO:0001053: plastid sigma factor activity | 4.90E-05 |
| 15 | GO:0016987: sigma factor activity | 4.90E-05 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.26E-04 |
| 17 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.70E-04 |
| 18 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.70E-04 |
| 19 | GO:0000824: inositol tetrakisphosphate 3-kinase activity | 2.70E-04 |
| 20 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.70E-04 |
| 21 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 2.70E-04 |
| 22 | GO:0004655: porphobilinogen synthase activity | 2.70E-04 |
| 23 | GO:0047326: inositol tetrakisphosphate 5-kinase activity | 2.70E-04 |
| 24 | GO:0052381: tRNA dimethylallyltransferase activity | 2.70E-04 |
| 25 | GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity | 2.70E-04 |
| 26 | GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity | 2.70E-04 |
| 27 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.19E-04 |
| 28 | GO:0042389: omega-3 fatty acid desaturase activity | 5.94E-04 |
| 29 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 5.94E-04 |
| 30 | GO:0016415: octanoyltransferase activity | 5.94E-04 |
| 31 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 5.94E-04 |
| 32 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 5.94E-04 |
| 33 | GO:0004817: cysteine-tRNA ligase activity | 5.94E-04 |
| 34 | GO:0000774: adenyl-nucleotide exchange factor activity | 5.94E-04 |
| 35 | GO:0016630: protochlorophyllide reductase activity | 5.94E-04 |
| 36 | GO:0004150: dihydroneopterin aldolase activity | 5.94E-04 |
| 37 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.94E-04 |
| 38 | GO:0017118: lipoyltransferase activity | 5.94E-04 |
| 39 | GO:0008266: poly(U) RNA binding | 8.95E-04 |
| 40 | GO:0004148: dihydrolipoyl dehydrogenase activity | 9.62E-04 |
| 41 | GO:0003723: RNA binding | 1.37E-03 |
| 42 | GO:0008097: 5S rRNA binding | 1.38E-03 |
| 43 | GO:0035250: UDP-galactosyltransferase activity | 1.38E-03 |
| 44 | GO:0016851: magnesium chelatase activity | 1.38E-03 |
| 45 | GO:0016149: translation release factor activity, codon specific | 1.38E-03 |
| 46 | GO:0004550: nucleoside diphosphate kinase activity | 1.38E-03 |
| 47 | GO:0043023: ribosomal large subunit binding | 1.38E-03 |
| 48 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.84E-03 |
| 49 | GO:0043495: protein anchor | 1.84E-03 |
| 50 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.84E-03 |
| 51 | GO:0015120: phosphoglycerate transmembrane transporter activity | 1.84E-03 |
| 52 | GO:0004659: prenyltransferase activity | 1.84E-03 |
| 53 | GO:0003727: single-stranded RNA binding | 1.92E-03 |
| 54 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.35E-03 |
| 55 | GO:0003959: NADPH dehydrogenase activity | 2.35E-03 |
| 56 | GO:0004040: amidase activity | 2.35E-03 |
| 57 | GO:0003729: mRNA binding | 2.71E-03 |
| 58 | GO:0005247: voltage-gated chloride channel activity | 2.90E-03 |
| 59 | GO:0031177: phosphopantetheine binding | 2.90E-03 |
| 60 | GO:0051082: unfolded protein binding | 3.03E-03 |
| 61 | GO:0004124: cysteine synthase activity | 3.49E-03 |
| 62 | GO:0000035: acyl binding | 3.49E-03 |
| 63 | GO:0019899: enzyme binding | 4.12E-03 |
| 64 | GO:0008312: 7S RNA binding | 4.77E-03 |
| 65 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 4.77E-03 |
| 66 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.61E-03 |
| 67 | GO:0003747: translation release factor activity | 6.20E-03 |
| 68 | GO:0016491: oxidoreductase activity | 6.55E-03 |
| 69 | GO:0008047: enzyme activator activity | 7.75E-03 |
| 70 | GO:0044183: protein binding involved in protein folding | 8.58E-03 |
| 71 | GO:0031072: heat shock protein binding | 1.03E-02 |
| 72 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.24E-02 |
| 73 | GO:0003690: double-stranded DNA binding | 1.28E-02 |
| 74 | GO:0005528: FK506 binding | 1.42E-02 |
| 75 | GO:0051087: chaperone binding | 1.52E-02 |
| 76 | GO:0004176: ATP-dependent peptidase activity | 1.62E-02 |
| 77 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.73E-02 |
| 78 | GO:0015035: protein disulfide oxidoreductase activity | 1.82E-02 |
| 79 | GO:0022891: substrate-specific transmembrane transporter activity | 1.84E-02 |
| 80 | GO:0047134: protein-disulfide reductase activity | 2.07E-02 |
| 81 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.31E-02 |
| 82 | GO:0004791: thioredoxin-disulfide reductase activity | 2.43E-02 |
| 83 | GO:0010181: FMN binding | 2.43E-02 |
| 84 | GO:0030170: pyridoxal phosphate binding | 2.46E-02 |
| 85 | GO:0008565: protein transporter activity | 2.66E-02 |
| 86 | GO:0015297: antiporter activity | 2.92E-02 |
| 87 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.94E-02 |
| 88 | GO:0008483: transaminase activity | 3.21E-02 |
| 89 | GO:0008237: metallopeptidase activity | 3.21E-02 |
| 90 | GO:0005509: calcium ion binding | 3.38E-02 |
| 91 | GO:0003743: translation initiation factor activity | 3.57E-02 |
| 92 | GO:0016168: chlorophyll binding | 3.63E-02 |
| 93 | GO:0042802: identical protein binding | 3.88E-02 |
| 94 | GO:0102483: scopolin beta-glucosidase activity | 3.91E-02 |
| 95 | GO:0004222: metalloendopeptidase activity | 4.51E-02 |
| 96 | GO:0003746: translation elongation factor activity | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.12E-89 |
| 3 | GO:0009570: chloroplast stroma | 1.42E-57 |
| 4 | GO:0009941: chloroplast envelope | 2.34E-54 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 5.92E-28 |
| 6 | GO:0009579: thylakoid | 1.68E-26 |
| 7 | GO:0005840: ribosome | 4.55E-26 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 4.88E-11 |
| 9 | GO:0000311: plastid large ribosomal subunit | 8.78E-11 |
| 10 | GO:0009536: plastid | 8.86E-09 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 7.07E-08 |
| 12 | GO:0009534: chloroplast thylakoid | 1.49E-07 |
| 13 | GO:0031977: thylakoid lumen | 5.16E-07 |
| 14 | GO:0033281: TAT protein transport complex | 1.21E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 1.77E-05 |
| 16 | GO:0015934: large ribosomal subunit | 9.37E-05 |
| 17 | GO:0015935: small ribosomal subunit | 1.17E-04 |
| 18 | GO:0031969: chloroplast membrane | 1.22E-04 |
| 19 | GO:0009547: plastid ribosome | 2.70E-04 |
| 20 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.70E-04 |
| 21 | GO:0009295: nucleoid | 4.43E-04 |
| 22 | GO:0080085: signal recognition particle, chloroplast targeting | 5.94E-04 |
| 23 | GO:0042170: plastid membrane | 5.94E-04 |
| 24 | GO:0000312: plastid small ribosomal subunit | 8.95E-04 |
| 25 | GO:0009509: chromoplast | 9.62E-04 |
| 26 | GO:0042651: thylakoid membrane | 1.35E-03 |
| 27 | GO:0042646: plastid nucleoid | 1.38E-03 |
| 28 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.90E-03 |
| 29 | GO:0034707: chloride channel complex | 2.90E-03 |
| 30 | GO:0009706: chloroplast inner membrane | 3.03E-03 |
| 31 | GO:0016363: nuclear matrix | 3.49E-03 |
| 32 | GO:0005762: mitochondrial large ribosomal subunit | 3.49E-03 |
| 33 | GO:0010319: stromule | 3.83E-03 |
| 34 | GO:0030529: intracellular ribonucleoprotein complex | 4.30E-03 |
| 35 | GO:0009539: photosystem II reaction center | 5.47E-03 |
| 36 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 5.47E-03 |
| 37 | GO:0009707: chloroplast outer membrane | 5.61E-03 |
| 38 | GO:0005763: mitochondrial small ribosomal subunit | 6.20E-03 |
| 39 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 6.20E-03 |
| 40 | GO:0032040: small-subunit processome | 9.44E-03 |
| 41 | GO:0009508: plastid chromosome | 1.03E-02 |
| 42 | GO:0030095: chloroplast photosystem II | 1.12E-02 |
| 43 | GO:0022626: cytosolic ribosome | 1.25E-02 |
| 44 | GO:0016020: membrane | 2.18E-02 |
| 45 | GO:0005623: cell | 2.28E-02 |
| 46 | GO:0009523: photosystem II | 2.55E-02 |
| 47 | GO:0005759: mitochondrial matrix | 2.79E-02 |
| 48 | GO:0022627: cytosolic small ribosomal subunit | 4.04E-02 |
| 49 | GO:0048046: apoplast | 4.47E-02 |