co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0015742: alpha-ketoglutarate transport	0.00E+00
5	GO:0006223: uracil salvage	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
8	GO:0097164: ammonium ion metabolic process	0.00E+00
9	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
10	GO:0015882: L-ascorbic acid transport	0.00E+00
11	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
12	GO:0015995: chlorophyll biosynthetic process	4.97E-14
13	GO:0006412: translation	1.33E-10
14	GO:0009735: response to cytokinin	6.66E-10
15	GO:0032544: plastid translation	1.22E-09
16	GO:0006783: heme biosynthetic process	2.44E-07
17	GO:0006782: protoporphyrinogen IX biosynthetic process	5.51E-07
18	GO:0009658: chloroplast organization	1.25E-06
19	GO:0042254: ribosome biogenesis	1.34E-06
20	GO:0010027: thylakoid membrane organization	3.13E-06
21	GO:1901259: chloroplast rRNA processing	3.44E-06
22	GO:0015979: photosynthesis	4.58E-06
23	GO:0090391: granum assembly	1.52E-05
24	GO:0051085: chaperone mediated protein folding requiring cofactor	3.40E-05
25	GO:0010028: xanthophyll cycle	3.07E-04
26	GO:0034337: RNA folding	3.07E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	3.07E-04
28	GO:1904964: positive regulation of phytol biosynthetic process	3.07E-04
29	GO:0042371: vitamin K biosynthetic process	3.07E-04
30	GO:0006436: tryptophanyl-tRNA aminoacylation	3.07E-04
31	GO:0009657: plastid organization	3.84E-04
32	GO:0006779: porphyrin-containing compound biosynthetic process	5.47E-04
33	GO:0008616: queuosine biosynthetic process	6.71E-04
34	GO:0006729: tetrahydrobiopterin biosynthetic process	6.71E-04
35	GO:0006568: tryptophan metabolic process	6.71E-04
36	GO:2000123: positive regulation of stomatal complex development	6.71E-04
37	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.71E-04
38	GO:0070981: L-asparagine biosynthetic process	6.71E-04
39	GO:0006423: cysteinyl-tRNA aminoacylation	6.71E-04
40	GO:0080183: response to photooxidative stress	6.71E-04
41	GO:0006529: asparagine biosynthetic process	6.71E-04
42	GO:0015714: phosphoenolpyruvate transport	1.09E-03
43	GO:0006518: peptide metabolic process	1.09E-03
44	GO:0051604: protein maturation	1.09E-03
45	GO:0071492: cellular response to UV-A	1.09E-03
46	GO:0006760: folic acid-containing compound metabolic process	1.09E-03
47	GO:0009790: embryo development	1.19E-03
48	GO:0045454: cell redox homeostasis	1.27E-03
49	GO:0019344: cysteine biosynthetic process	1.47E-03
50	GO:0015729: oxaloacetate transport	1.56E-03
51	GO:0006241: CTP biosynthetic process	1.56E-03
52	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.56E-03
53	GO:0033014: tetrapyrrole biosynthetic process	1.56E-03
54	GO:0006165: nucleoside diphosphate phosphorylation	1.56E-03
55	GO:0006228: UTP biosynthetic process	1.56E-03
56	GO:0006986: response to unfolded protein	1.56E-03
57	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.56E-03
58	GO:0042742: defense response to bacterium	1.72E-03
59	GO:0019676: ammonia assimilation cycle	2.09E-03
60	GO:0015743: malate transport	2.09E-03
61	GO:0071486: cellular response to high light intensity	2.09E-03
62	GO:0006183: GTP biosynthetic process	2.09E-03
63	GO:2000038: regulation of stomatal complex development	2.09E-03
64	GO:0046656: folic acid biosynthetic process	2.09E-03
65	GO:0030007: cellular potassium ion homeostasis	2.09E-03
66	GO:0015713: phosphoglycerate transport	2.09E-03
67	GO:0044206: UMP salvage	2.09E-03
68	GO:0006021: inositol biosynthetic process	2.09E-03
69	GO:0006457: protein folding	2.29E-03
70	GO:0009306: protein secretion	2.31E-03
71	GO:0010375: stomatal complex patterning	2.67E-03
72	GO:0071423: malate transmembrane transport	2.67E-03
73	GO:0043097: pyrimidine nucleoside salvage	2.67E-03
74	GO:0010236: plastoquinone biosynthetic process	2.67E-03
75	GO:0006662: glycerol ether metabolic process	2.91E-03
76	GO:0006796: phosphate-containing compound metabolic process	3.30E-03
77	GO:0006206: pyrimidine nucleobase metabolic process	3.30E-03
78	GO:0010190: cytochrome b6f complex assembly	3.30E-03
79	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.30E-03
80	GO:0046855: inositol phosphate dephosphorylation	3.30E-03
81	GO:0009117: nucleotide metabolic process	3.30E-03
82	GO:0032502: developmental process	3.83E-03
83	GO:0009955: adaxial/abaxial pattern specification	3.97E-03
84	GO:0042026: protein refolding	3.97E-03
85	GO:0042372: phylloquinone biosynthetic process	3.97E-03
86	GO:0017148: negative regulation of translation	3.97E-03
87	GO:0046654: tetrahydrofolate biosynthetic process	3.97E-03
88	GO:0009854: oxidative photosynthetic carbon pathway	3.97E-03
89	GO:0010555: response to mannitol	3.97E-03
90	GO:0009772: photosynthetic electron transport in photosystem II	4.68E-03
91	GO:0010196: nonphotochemical quenching	4.68E-03
92	GO:0006826: iron ion transport	4.68E-03
93	GO:0052543: callose deposition in cell wall	5.44E-03
94	GO:0048564: photosystem I assembly	5.44E-03
95	GO:0009642: response to light intensity	5.44E-03
96	GO:0042255: ribosome assembly	5.44E-03
97	GO:0006353: DNA-templated transcription, termination	5.44E-03
98	GO:0006605: protein targeting	5.44E-03
99	GO:0009627: systemic acquired resistance	5.79E-03
100	GO:0006633: fatty acid biosynthetic process	6.85E-03
101	GO:0098656: anion transmembrane transport	7.07E-03
102	GO:0009245: lipid A biosynthetic process	7.07E-03
103	GO:0034765: regulation of ion transmembrane transport	7.07E-03
104	GO:0043067: regulation of programmed cell death	7.94E-03
105	GO:0031425: chloroplast RNA processing	7.94E-03
106	GO:0019538: protein metabolic process	8.84E-03
107	GO:0006535: cysteine biosynthetic process from serine	8.84E-03
108	GO:0045036: protein targeting to chloroplast	8.84E-03
109	GO:0034599: cellular response to oxidative stress	8.98E-03
110	GO:0009089: lysine biosynthetic process via diaminopimelate	9.79E-03
111	GO:0043085: positive regulation of catalytic activity	9.79E-03
112	GO:0006415: translational termination	9.79E-03
113	GO:0016485: protein processing	9.79E-03
114	GO:0006790: sulfur compound metabolic process	1.08E-02
115	GO:0045037: protein import into chloroplast stroma	1.08E-02
116	GO:0009767: photosynthetic electron transport chain	1.18E-02
117	GO:0006541: glutamine metabolic process	1.28E-02
118	GO:0010020: chloroplast fission	1.28E-02
119	GO:0019253: reductive pentose-phosphate cycle	1.28E-02
120	GO:0019853: L-ascorbic acid biosynthetic process	1.39E-02
121	GO:0010039: response to iron ion	1.39E-02
122	GO:0046854: phosphatidylinositol phosphorylation	1.39E-02
123	GO:0042538: hyperosmotic salinity response	1.40E-02
124	GO:0006487: protein N-linked glycosylation	1.62E-02
125	GO:0009116: nucleoside metabolic process	1.62E-02
126	GO:0006418: tRNA aminoacylation for protein translation	1.74E-02
127	GO:0080167: response to karrikin	1.77E-02
128	GO:0061077: chaperone-mediated protein folding	1.86E-02
129	GO:0051260: protein homooligomerization	1.86E-02
130	GO:0007005: mitochondrion organization	1.98E-02
131	GO:0009411: response to UV	2.11E-02
132	GO:0016117: carotenoid biosynthetic process	2.37E-02
133	GO:0042335: cuticle development	2.50E-02
134	GO:0000413: protein peptidyl-prolyl isomerization	2.50E-02
135	GO:0009741: response to brassinosteroid	2.64E-02
136	GO:0010197: polar nucleus fusion	2.64E-02
137	GO:0009646: response to absence of light	2.78E-02
138	GO:0006814: sodium ion transport	2.78E-02
139	GO:0009791: post-embryonic development	2.92E-02
140	GO:0010583: response to cyclopentenone	3.21E-02
141	GO:1901657: glycosyl compound metabolic process	3.36E-02
142	GO:0006413: translational initiation	3.45E-02
143	GO:0009567: double fertilization forming a zygote and endosperm	3.52E-02
144	GO:0046686: response to cadmium ion	3.61E-02
145	GO:0010286: heat acclimation	3.67E-02
146	GO:0071805: potassium ion transmembrane transport	3.67E-02
147	GO:0007267: cell-cell signaling	3.67E-02
148	GO:0010029: regulation of seed germination	4.15E-02
149	GO:0008380: RNA splicing	4.40E-02
150	GO:0048481: plant ovule development	4.81E-02
151	GO:0018298: protein-chromophore linkage	4.81E-02
152	GO:0008219: cell death	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
2	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0015269: calcium-activated potassium channel activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0008887: glycerate kinase activity	0.00E+00
8	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
9	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
10	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
11	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
12	GO:0046408: chlorophyll synthetase activity	0.00E+00
13	GO:0003735: structural constituent of ribosome	1.57E-12
14	GO:0019843: rRNA binding	2.98E-09
15	GO:0016851: magnesium chelatase activity	3.40E-05
16	GO:0043495: protein anchor	6.10E-05
17	GO:0051087: chaperone binding	1.33E-04
18	GO:0016462: pyrophosphatase activity	1.39E-04
19	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.07E-04
20	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.07E-04
21	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.07E-04
22	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.07E-04
23	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.07E-04
24	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	3.07E-04
25	GO:0004071: aspartate-ammonia ligase activity	3.07E-04
26	GO:0009374: biotin binding	3.07E-04
27	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.07E-04
28	GO:0004830: tryptophan-tRNA ligase activity	3.07E-04
29	GO:0051082: unfolded protein binding	6.70E-04
30	GO:0102083: 7,8-dihydromonapterin aldolase activity	6.71E-04
31	GO:0052832: inositol monophosphate 3-phosphatase activity	6.71E-04
32	GO:0004312: fatty acid synthase activity	6.71E-04
33	GO:0004817: cysteine-tRNA ligase activity	6.71E-04
34	GO:0008479: queuine tRNA-ribosyltransferase activity	6.71E-04
35	GO:0000774: adenyl-nucleotide exchange factor activity	6.71E-04
36	GO:0008934: inositol monophosphate 1-phosphatase activity	6.71E-04
37	GO:0052833: inositol monophosphate 4-phosphatase activity	6.71E-04
38	GO:0016630: protochlorophyllide reductase activity	6.71E-04
39	GO:0004150: dihydroneopterin aldolase activity	6.71E-04
40	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.71E-04
41	GO:0015367: oxoglutarate:malate antiporter activity	6.71E-04
42	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	6.71E-04
43	GO:0015035: protein disulfide oxidoreductase activity	7.01E-04
44	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.09E-03
45	GO:0004148: dihydrolipoyl dehydrogenase activity	1.09E-03
46	GO:0004751: ribose-5-phosphate isomerase activity	1.09E-03
47	GO:0070402: NADPH binding	1.09E-03
48	GO:0008097: 5S rRNA binding	1.56E-03
49	GO:0001872: (1->3)-beta-D-glucan binding	1.56E-03
50	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.56E-03
51	GO:0015131: oxaloacetate transmembrane transporter activity	1.56E-03
52	GO:0035529: NADH pyrophosphatase activity	1.56E-03
53	GO:0016149: translation release factor activity, codon specific	1.56E-03
54	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.56E-03
55	GO:0004550: nucleoside diphosphate kinase activity	1.56E-03
56	GO:0043023: ribosomal large subunit binding	1.56E-03
57	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.05E-03
58	GO:0004845: uracil phosphoribosyltransferase activity	2.09E-03
59	GO:0004045: aminoacyl-tRNA hydrolase activity	2.09E-03
60	GO:0015120: phosphoglycerate transmembrane transporter activity	2.09E-03
61	GO:0004659: prenyltransferase activity	2.09E-03
62	GO:0022891: substrate-specific transmembrane transporter activity	2.12E-03
63	GO:0047134: protein-disulfide reductase activity	2.50E-03
64	GO:0003989: acetyl-CoA carboxylase activity	2.67E-03
65	GO:0003959: NADPH dehydrogenase activity	2.67E-03
66	GO:0030414: peptidase inhibitor activity	2.67E-03
67	GO:0004040: amidase activity	2.67E-03
68	GO:0005507: copper ion binding	2.77E-03
69	GO:0004791: thioredoxin-disulfide reductase activity	3.13E-03
70	GO:0010181: FMN binding	3.13E-03
71	GO:0015271: outward rectifier potassium channel activity	3.30E-03
72	GO:0031177: phosphopantetheine binding	3.30E-03
73	GO:0004124: cysteine synthase activity	3.97E-03
74	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.97E-03
75	GO:0004849: uridine kinase activity	3.97E-03
76	GO:0000035: acyl binding	3.97E-03
77	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.09E-03
78	GO:0008237: metallopeptidase activity	4.62E-03
79	GO:0004427: inorganic diphosphatase activity	4.68E-03
80	GO:0015140: malate transmembrane transporter activity	4.68E-03
81	GO:0019899: enzyme binding	4.68E-03
82	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.44E-03
83	GO:0016168: chlorophyll binding	5.48E-03
84	GO:0042803: protein homodimerization activity	5.84E-03
85	GO:0005267: potassium channel activity	6.23E-03
86	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.77E-03
87	GO:0003747: translation release factor activity	7.07E-03
88	GO:0004222: metalloendopeptidase activity	7.47E-03
89	GO:0003746: translation elongation factor activity	8.59E-03
90	GO:0008047: enzyme activator activity	8.84E-03
91	GO:0016491: oxidoreductase activity	9.47E-03
92	GO:0044183: protein binding involved in protein folding	9.79E-03
93	GO:0008794: arsenate reductase (glutaredoxin) activity	9.79E-03
94	GO:0031072: heat shock protein binding	1.18E-02
95	GO:0005315: inorganic phosphate transmembrane transporter activity	1.18E-02
96	GO:0051537: 2 iron, 2 sulfur cluster binding	1.20E-02
97	GO:0003729: mRNA binding	1.20E-02
98	GO:0003723: RNA binding	1.31E-02
99	GO:0051119: sugar transmembrane transporter activity	1.39E-02
100	GO:0005528: FK506 binding	1.62E-02
101	GO:0043424: protein histidine kinase binding	1.74E-02
102	GO:0005216: ion channel activity	1.74E-02
103	GO:0004176: ATP-dependent peptidase activity	1.86E-02
104	GO:0004650: polygalacturonase activity	1.95E-02
105	GO:0008514: organic anion transmembrane transporter activity	2.24E-02
106	GO:0003727: single-stranded RNA binding	2.24E-02
107	GO:0004812: aminoacyl-tRNA ligase activity	2.37E-02
108	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.64E-02
109	GO:0019901: protein kinase binding	2.92E-02
110	GO:0030170: pyridoxal phosphate binding	2.97E-02
111	GO:0009055: electron carrier activity	3.15E-02
112	GO:0008565: protein transporter activity	3.20E-02
113	GO:0015297: antiporter activity	3.53E-02
114	GO:0008483: transaminase activity	3.67E-02
115	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.67E-02
116	GO:0003743: translation initiation factor activity	4.31E-02
117	GO:0008375: acetylglucosaminyltransferase activity	4.31E-02
118	GO:0102483: scopolin beta-glucosidase activity	4.48E-02
119	GO:0030247: polysaccharide binding	4.48E-02
120	GO:0008236: serine-type peptidase activity	4.64E-02
121	GO:0042802: identical protein binding	4.68E-02
122	GO:0016887: ATPase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	1.62E-77
3	GO:0009570: chloroplast stroma	8.91E-65
4	GO:0009941: chloroplast envelope	1.15E-47
5	GO:0009579: thylakoid	7.29E-27
6	GO:0009535: chloroplast thylakoid membrane	3.56E-24
7	GO:0005840: ribosome	6.35E-14
8	GO:0009536: plastid	3.37E-10
9	GO:0031977: thylakoid lumen	3.58E-08
10	GO:0009534: chloroplast thylakoid	3.90E-08
11	GO:0009543: chloroplast thylakoid lumen	6.27E-08
12	GO:0009654: photosystem II oxygen evolving complex	5.32E-06
13	GO:0000311: plastid large ribosomal subunit	4.68E-05
14	GO:0009295: nucleoid	4.89E-05
15	GO:0005759: mitochondrial matrix	2.39E-04
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.07E-04
17	GO:0009515: granal stacked thylakoid	3.07E-04
18	GO:0019898: extrinsic component of membrane	3.71E-04
19	GO:0009706: chloroplast inner membrane	6.70E-04
20	GO:0031969: chloroplast membrane	9.30E-04
21	GO:0009508: plastid chromosome	9.50E-04
22	GO:0010007: magnesium chelatase complex	1.09E-03
23	GO:0033281: TAT protein transport complex	1.09E-03
24	GO:0009509: chromoplast	1.09E-03
25	GO:0009317: acetyl-CoA carboxylase complex	1.09E-03
26	GO:0015934: large ribosomal subunit	1.09E-03
27	GO:0048046: apoplast	1.66E-03
28	GO:0015935: small ribosomal subunit	1.78E-03
29	GO:0009526: plastid envelope	2.09E-03
30	GO:0055035: plastid thylakoid membrane	2.67E-03
31	GO:0009523: photosystem II	3.35E-03
32	GO:0030529: intracellular ribonucleoprotein complex	5.19E-03
33	GO:0009539: photosystem II reaction center	6.23E-03
34	GO:0005763: mitochondrial small ribosomal subunit	7.07E-03
35	GO:0032040: small-subunit processome	1.08E-02
36	GO:0046658: anchored component of plasma membrane	1.11E-02
37	GO:0030095: chloroplast photosystem II	1.28E-02
38	GO:0000312: plastid small ribosomal subunit	1.28E-02
39	GO:0043234: protein complex	1.50E-02
40	GO:0022626: cytosolic ribosome	1.66E-02
41	GO:0042651: thylakoid membrane	1.74E-02
42	GO:0009532: plastid stroma	1.86E-02
43	GO:0005623: cell	2.75E-02
44	GO:0016592: mediator complex	3.21E-02
45	GO:0010319: stromule	3.67E-02
46	GO:0005778: peroxisomal membrane	3.67E-02
47	GO:0009707: chloroplast outer membrane	4.81E-02