Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G30490

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072660: maintenance of protein location in plasma membrane0.00E+00
2GO:0071327: cellular response to trehalose stimulus0.00E+00
3GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
4GO:0051245: negative regulation of cellular defense response0.00E+00
5GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
6GO:0070212: protein poly-ADP-ribosylation0.00E+00
7GO:0045792: negative regulation of cell size0.00E+00
8GO:0042430: indole-containing compound metabolic process0.00E+00
9GO:1900367: positive regulation of defense response to insect0.00E+00
10GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
11GO:0051553: flavone biosynthetic process0.00E+00
12GO:0006468: protein phosphorylation8.70E-12
13GO:0010200: response to chitin5.46E-09
14GO:0006952: defense response4.80E-08
15GO:0009626: plant-type hypersensitive response1.36E-07
16GO:0060548: negative regulation of cell death2.85E-07
17GO:0010942: positive regulation of cell death1.26E-06
18GO:0042742: defense response to bacterium1.36E-06
19GO:0009816: defense response to bacterium, incompatible interaction1.88E-06
20GO:0009617: response to bacterium2.64E-06
21GO:0010618: aerenchyma formation3.07E-06
22GO:0031349: positive regulation of defense response3.07E-06
23GO:0006612: protein targeting to membrane2.51E-05
24GO:0010363: regulation of plant-type hypersensitive response4.54E-05
25GO:0080142: regulation of salicylic acid biosynthetic process4.54E-05
26GO:0018344: protein geranylgeranylation7.21E-05
27GO:0009863: salicylic acid mediated signaling pathway7.91E-05
28GO:0031348: negative regulation of defense response1.22E-04
29GO:0010310: regulation of hydrogen peroxide metabolic process1.45E-04
30GO:0070370: cellular heat acclimation1.90E-04
31GO:0030162: regulation of proteolysis2.41E-04
32GO:0061025: membrane fusion2.41E-04
33GO:0009609: response to symbiotic bacterium2.57E-04
34GO:1990022: RNA polymerase III complex localization to nucleus2.57E-04
35GO:1901183: positive regulation of camalexin biosynthetic process2.57E-04
36GO:0009270: response to humidity2.57E-04
37GO:0044376: RNA polymerase II complex import to nucleus2.57E-04
38GO:0060862: negative regulation of floral organ abscission2.57E-04
39GO:2000031: regulation of salicylic acid mediated signaling pathway2.98E-04
40GO:0043562: cellular response to nitrogen levels2.98E-04
41GO:0051865: protein autoubiquitination3.60E-04
42GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway4.27E-04
43GO:0043069: negative regulation of programmed cell death4.99E-04
44GO:0009627: systemic acquired resistance5.45E-04
45GO:0080151: positive regulation of salicylic acid mediated signaling pathway5.68E-04
46GO:0009838: abscission5.68E-04
47GO:0080185: effector dependent induction by symbiont of host immune response5.68E-04
48GO:0006212: uracil catabolic process5.68E-04
49GO:0019483: beta-alanine biosynthetic process5.68E-04
50GO:0015865: purine nucleotide transport5.68E-04
51GO:1902000: homogentisate catabolic process5.68E-04
52GO:0019725: cellular homeostasis5.68E-04
53GO:0046740: transport of virus in host, cell to cell5.68E-04
54GO:0015914: phospholipid transport5.68E-04
55GO:0000266: mitochondrial fission6.59E-04
56GO:0012501: programmed cell death6.59E-04
57GO:0044550: secondary metabolite biosynthetic process6.90E-04
58GO:0034605: cellular response to heat8.40E-04
59GO:0002237: response to molecule of bacterial origin8.40E-04
60GO:0009072: aromatic amino acid family metabolic process9.22E-04
61GO:0048281: inflorescence morphogenesis9.22E-04
62GO:0010581: regulation of starch biosynthetic process9.22E-04
63GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway9.22E-04
64GO:1900140: regulation of seedling development9.22E-04
65GO:0055074: calcium ion homeostasis9.22E-04
66GO:0045793: positive regulation of cell size9.22E-04
67GO:0072661: protein targeting to plasma membrane9.22E-04
68GO:0010186: positive regulation of cellular defense response9.22E-04
69GO:0042343: indole glucosinolate metabolic process9.38E-04
70GO:0010167: response to nitrate9.38E-04
71GO:0010150: leaf senescence1.04E-03
72GO:0009751: response to salicylic acid1.15E-03
73GO:0051707: response to other organism1.22E-03
74GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.23E-03
75GO:0007166: cell surface receptor signaling pathway1.27E-03
76GO:0048194: Golgi vesicle budding1.32E-03
77GO:0010071: root meristem specification1.32E-03
78GO:0002239: response to oomycetes1.32E-03
79GO:0043207: response to external biotic stimulus1.32E-03
80GO:0046902: regulation of mitochondrial membrane permeability1.32E-03
81GO:0009399: nitrogen fixation1.32E-03
82GO:0010148: transpiration1.32E-03
83GO:0048530: fruit morphogenesis1.32E-03
84GO:0002679: respiratory burst involved in defense response1.32E-03
85GO:0098542: defense response to other organism1.39E-03
86GO:0048278: vesicle docking1.39E-03
87GO:2000022: regulation of jasmonic acid mediated signaling pathway1.52E-03
88GO:0071456: cellular response to hypoxia1.52E-03
89GO:0031347: regulation of defense response1.55E-03
90GO:0046345: abscisic acid catabolic process1.76E-03
91GO:0010483: pollen tube reception1.76E-03
92GO:0045727: positive regulation of translation1.76E-03
93GO:0010508: positive regulation of autophagy1.76E-03
94GO:0006542: glutamine biosynthetic process1.76E-03
95GO:0080037: negative regulation of cytokinin-activated signaling pathway1.76E-03
96GO:0010225: response to UV-C2.25E-03
97GO:0000304: response to singlet oxygen2.25E-03
98GO:0009697: salicylic acid biosynthetic process2.25E-03
99GO:2000762: regulation of phenylpropanoid metabolic process2.25E-03
100GO:0030041: actin filament polymerization2.25E-03
101GO:0046283: anthocyanin-containing compound metabolic process2.25E-03
102GO:0009620: response to fungus2.48E-03
103GO:1900425: negative regulation of defense response to bacterium2.77E-03
104GO:0002238: response to molecule of fungal origin2.77E-03
105GO:0000302: response to reactive oxygen species2.79E-03
106GO:0010193: response to ozone2.79E-03
107GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.95E-03
108GO:0016192: vesicle-mediated transport3.03E-03
109GO:2000067: regulation of root morphogenesis3.33E-03
110GO:0000911: cytokinesis by cell plate formation3.33E-03
111GO:0009612: response to mechanical stimulus3.33E-03
112GO:0009094: L-phenylalanine biosynthetic process3.33E-03
113GO:0010199: organ boundary specification between lateral organs and the meristem3.33E-03
114GO:0010555: response to mannitol3.33E-03
115GO:0050832: defense response to fungus3.79E-03
116GO:0006886: intracellular protein transport3.87E-03
117GO:0009610: response to symbiotic fungus3.93E-03
118GO:0043090: amino acid import3.93E-03
119GO:0071446: cellular response to salicylic acid stimulus3.93E-03
120GO:0050829: defense response to Gram-negative bacterium3.93E-03
121GO:0010044: response to aluminum ion3.93E-03
122GO:0001666: response to hypoxia4.03E-03
123GO:0042128: nitrate assimilation4.49E-03
124GO:0006906: vesicle fusion4.49E-03
125GO:0016559: peroxisome fission4.56E-03
126GO:0009787: regulation of abscisic acid-activated signaling pathway4.56E-03
127GO:0043068: positive regulation of programmed cell death4.56E-03
128GO:1900150: regulation of defense response to fungus4.56E-03
129GO:0010078: maintenance of root meristem identity4.56E-03
130GO:0010492: maintenance of shoot apical meristem identity4.56E-03
131GO:0006102: isocitrate metabolic process4.56E-03
132GO:0009737: response to abscisic acid5.10E-03
133GO:0009699: phenylpropanoid biosynthetic process5.22E-03
134GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.22E-03
135GO:0007186: G-protein coupled receptor signaling pathway5.22E-03
136GO:0010120: camalexin biosynthetic process5.22E-03
137GO:0010497: plasmodesmata-mediated intercellular transport5.22E-03
138GO:0010204: defense response signaling pathway, resistance gene-independent5.22E-03
139GO:0008219: cell death5.25E-03
140GO:0007338: single fertilization5.92E-03
141GO:0046685: response to arsenic-containing substance5.92E-03
142GO:0010112: regulation of systemic acquired resistance5.92E-03
143GO:0009409: response to cold6.06E-03
144GO:0010119: regulation of stomatal movement6.07E-03
145GO:1900426: positive regulation of defense response to bacterium6.64E-03
146GO:2000280: regulation of root development6.64E-03
147GO:0008202: steroid metabolic process6.64E-03
148GO:0009867: jasmonic acid mediated signaling pathway6.65E-03
149GO:0009870: defense response signaling pathway, resistance gene-dependent7.40E-03
150GO:0006032: chitin catabolic process7.40E-03
151GO:0006887: exocytosis7.91E-03
152GO:0009750: response to fructose8.19E-03
153GO:0030148: sphingolipid biosynthetic process8.19E-03
154GO:0042542: response to hydrogen peroxide8.25E-03
155GO:0015706: nitrate transport9.00E-03
156GO:0002213: defense response to insect9.00E-03
157GO:0010105: negative regulation of ethylene-activated signaling pathway9.00E-03
158GO:0006807: nitrogen compound metabolic process9.85E-03
159GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.04E-02
160GO:0009266: response to temperature stimulus1.07E-02
161GO:0006970: response to osmotic stress1.07E-02
162GO:0007034: vacuolar transport1.07E-02
163GO:0010053: root epidermal cell differentiation1.16E-02
164GO:0070588: calcium ion transmembrane transport1.16E-02
165GO:0006833: water transport1.25E-02
166GO:0080167: response to karrikin1.28E-02
167GO:0035556: intracellular signal transduction1.31E-02
168GO:0009651: response to salt stress1.35E-02
169GO:0006874: cellular calcium ion homeostasis1.45E-02
170GO:0016998: cell wall macromolecule catabolic process1.55E-02
171GO:0009814: defense response, incompatible interaction1.65E-02
172GO:0007005: mitochondrion organization1.65E-02
173GO:0015031: protein transport1.67E-02
174GO:0018105: peptidyl-serine phosphorylation1.70E-02
175GO:0009742: brassinosteroid mediated signaling pathway1.76E-02
176GO:0009411: response to UV1.76E-02
177GO:0009625: response to insect1.76E-02
178GO:0010584: pollen exine formation1.86E-02
179GO:0042391: regulation of membrane potential2.09E-02
180GO:0080022: primary root development2.09E-02
181GO:0034220: ion transmembrane transport2.09E-02
182GO:0009408: response to heat2.10E-02
183GO:0008360: regulation of cell shape2.20E-02
184GO:0010197: polar nucleus fusion2.20E-02
185GO:0006623: protein targeting to vacuole2.43E-02
186GO:0010183: pollen tube guidance2.43E-02
187GO:0009749: response to glucose2.43E-02
188GO:0008654: phospholipid biosynthetic process2.43E-02
189GO:0002229: defense response to oomycetes2.56E-02
190GO:0006891: intra-Golgi vesicle-mediated transport2.56E-02
191GO:0007264: small GTPase mediated signal transduction2.68E-02
192GO:0040008: regulation of growth2.74E-02
193GO:0030163: protein catabolic process2.80E-02
194GO:0009567: double fertilization forming a zygote and endosperm2.93E-02
195GO:0016311: dephosphorylation3.87E-02
196GO:0009817: defense response to fungus, incompatible interaction4.01E-02
197GO:0009738: abscisic acid-activated signaling pathway4.11E-02
198GO:0009813: flavonoid biosynthetic process4.16E-02
199GO:0006499: N-terminal protein myristoylation4.30E-02
200GO:0009407: toxin catabolic process4.30E-02
201GO:0007568: aging4.45E-02
202GO:0048527: lateral root development4.45E-02
203GO:0006865: amino acid transport4.60E-02
204GO:0006099: tricarboxylic acid cycle4.90E-02
RankGO TermAdjusted P value
1GO:0016034: maleylacetoacetate isomerase activity0.00E+00
2GO:0004168: dolichol kinase activity0.00E+00
3GO:0033759: flavone synthase activity0.00E+00
4GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
5GO:0003837: beta-ureidopropionase activity0.00E+00
6GO:0005092: GDP-dissociation inhibitor activity0.00E+00
7GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
8GO:0004674: protein serine/threonine kinase activity4.07E-10
9GO:0016301: kinase activity1.52E-08
10GO:0005524: ATP binding4.79E-07
11GO:0004713: protein tyrosine kinase activity1.94E-05
12GO:0004672: protein kinase activity4.51E-05
13GO:0004714: transmembrane receptor protein tyrosine kinase activity2.41E-04
14GO:1901149: salicylic acid binding2.57E-04
15GO:0080042: ADP-glucose pyrophosphohydrolase activity2.57E-04
16GO:0005516: calmodulin binding5.09E-04
17GO:0080041: ADP-ribose pyrophosphohydrolase activity5.68E-04
18GO:0017110: nucleoside-diphosphatase activity5.68E-04
19GO:0032934: sterol binding5.68E-04
20GO:0001671: ATPase activator activity5.68E-04
21GO:0045140: inositol phosphoceramide synthase activity5.68E-04
22GO:0004683: calmodulin-dependent protein kinase activity5.83E-04
23GO:0001664: G-protein coupled receptor binding9.22E-04
24GO:0005093: Rab GDP-dissociation inhibitor activity9.22E-04
25GO:0031683: G-protein beta/gamma-subunit complex binding9.22E-04
26GO:0004663: Rab geranylgeranyltransferase activity9.22E-04
27GO:0016595: glutamate binding9.22E-04
28GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen9.34E-04
29GO:0004675: transmembrane receptor protein serine/threonine kinase activity9.39E-04
30GO:0005484: SNAP receptor activity1.22E-03
31GO:0004449: isocitrate dehydrogenase (NAD+) activity1.32E-03
32GO:0033612: receptor serine/threonine kinase binding1.39E-03
33GO:0004664: prephenate dehydratase activity1.76E-03
34GO:0043495: protein anchor1.76E-03
35GO:0047769: arogenate dehydratase activity1.76E-03
36GO:0031625: ubiquitin protein ligase binding2.03E-03
37GO:0010294: abscisic acid glucosyltransferase activity2.25E-03
38GO:0017137: Rab GTPase binding2.25E-03
39GO:0047631: ADP-ribose diphosphatase activity2.25E-03
40GO:0005471: ATP:ADP antiporter activity2.25E-03
41GO:0004356: glutamate-ammonia ligase activity2.25E-03
42GO:0004605: phosphatidate cytidylyltransferase activity2.77E-03
43GO:0000210: NAD+ diphosphatase activity2.77E-03
44GO:0004029: aldehyde dehydrogenase (NAD) activity2.77E-03
45GO:0005509: calcium ion binding2.85E-03
46GO:0004012: phospholipid-translocating ATPase activity3.33E-03
47GO:0016597: amino acid binding3.80E-03
48GO:0009931: calcium-dependent protein serine/threonine kinase activity4.49E-03
49GO:0005544: calcium-dependent phospholipid binding4.56E-03
50GO:0004806: triglyceride lipase activity4.74E-03
51GO:0008142: oxysterol binding5.22E-03
52GO:0003843: 1,3-beta-D-glucan synthase activity5.22E-03
53GO:0005515: protein binding5.78E-03
54GO:0019825: oxygen binding5.98E-03
55GO:0004842: ubiquitin-protein transferase activity6.31E-03
56GO:0015112: nitrate transmembrane transporter activity6.64E-03
57GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.64E-03
58GO:0045309: protein phosphorylated amino acid binding6.64E-03
59GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors6.65E-03
60GO:0000149: SNARE binding7.27E-03
61GO:0004568: chitinase activity7.40E-03
62GO:0019904: protein domain specific binding8.19E-03
63GO:0005262: calcium channel activity9.85E-03
64GO:0005388: calcium-transporting ATPase activity9.85E-03
65GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism9.85E-03
66GO:0031072: heat shock protein binding9.85E-03
67GO:0005506: iron ion binding1.07E-02
68GO:0030552: cAMP binding1.16E-02
69GO:0030553: cGMP binding1.16E-02
70GO:0003712: transcription cofactor activity1.16E-02
71GO:0004970: ionotropic glutamate receptor activity1.16E-02
72GO:0005217: intracellular ligand-gated ion channel activity1.16E-02
73GO:0004190: aspartic-type endopeptidase activity1.16E-02
74GO:0016298: lipase activity1.20E-02
75GO:0003954: NADH dehydrogenase activity1.35E-02
76GO:0051087: chaperone binding1.45E-02
77GO:0005216: ion channel activity1.45E-02
78GO:0080043: quercetin 3-O-glucosyltransferase activity1.51E-02
79GO:0080044: quercetin 7-O-glucosyltransferase activity1.51E-02
80GO:0004298: threonine-type endopeptidase activity1.55E-02
81GO:0051082: unfolded protein binding1.65E-02
82GO:0004871: signal transducer activity1.71E-02
83GO:0042803: protein homodimerization activity1.71E-02
84GO:0030551: cyclic nucleotide binding2.09E-02
85GO:0005249: voltage-gated potassium channel activity2.09E-02
86GO:0003924: GTPase activity2.10E-02
87GO:0008080: N-acetyltransferase activity2.20E-02
88GO:0001085: RNA polymerase II transcription factor binding2.20E-02
89GO:0020037: heme binding2.41E-02
90GO:0008194: UDP-glycosyltransferase activity3.20E-02
91GO:0043565: sequence-specific DNA binding3.21E-02
92GO:0015250: water channel activity3.32E-02
93GO:0051213: dioxygenase activity3.32E-02
94GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.87E-02
95GO:0005096: GTPase activator activity4.16E-02
96GO:0004222: metalloendopeptidase activity4.30E-02
97GO:0030145: manganese ion binding4.45E-02
98GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.45E-02
99GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.45E-02
100GO:0003993: acid phosphatase activity4.90E-02
101GO:0000987: core promoter proximal region sequence-specific DNA binding4.90E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane2.17E-21
2GO:0016021: integral component of membrane4.48E-07
3GO:0005968: Rab-protein geranylgeranyltransferase complex2.51E-05
4GO:0005911: cell-cell junction2.57E-04
5GO:0009504: cell plate2.66E-04
6GO:0031304: intrinsic component of mitochondrial inner membrane5.68E-04
7GO:0005901: caveola5.68E-04
8GO:0005783: endoplasmic reticulum7.85E-04
9GO:0009506: plasmodesma1.08E-03
10GO:0030658: transport vesicle membrane1.32E-03
11GO:0005741: mitochondrial outer membrane1.39E-03
12GO:0019773: proteasome core complex, alpha-subunit complex5.22E-03
13GO:0000148: 1,3-beta-D-glucan synthase complex5.22E-03
14GO:0019005: SCF ubiquitin ligase complex5.25E-03
15GO:0030665: clathrin-coated vesicle membrane6.64E-03
16GO:0005740: mitochondrial envelope7.40E-03
17GO:0017119: Golgi transport complex7.40E-03
18GO:0031201: SNARE complex7.91E-03
19GO:0031902: late endosome membrane7.91E-03
20GO:0005887: integral component of plasma membrane8.07E-03
21GO:0031012: extracellular matrix9.85E-03
22GO:0030176: integral component of endoplasmic reticulum membrane1.16E-02
23GO:0005795: Golgi stack1.16E-02
24GO:0005839: proteasome core complex1.55E-02
25GO:0005737: cytoplasm2.15E-02
26GO:0005829: cytosol2.41E-02
27GO:0005802: trans-Golgi network2.45E-02
28GO:0016020: membrane3.06E-02
29GO:0005778: peroxisomal membrane3.06E-02
30GO:0005788: endoplasmic reticulum lumen3.46E-02
31GO:0005667: transcription factor complex3.59E-02
32GO:0000151: ubiquitin ligase complex4.01E-02
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Gene type



Gene DE type